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Lj5g3v1427780.1

Overview

Field Value
Gene ID Lj5g3v1427780
Transcript ID Lj5g3v1427780.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: acyl carrier protein 1, chloroplastic-like [Glycine max] gi|356535129|ref|XP_003536101.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR20863:SF29
1 143 143 2.30E-69 –
PANTHER
PTHR20863
1 143 143 2.30E-69 –
Gene3D
G3DSA:1.10.1200.10
52 140 89 5.40E-30
IPR009081
SUPERFAMILY
SSF47336
63 140 78 2.62E-17
IPR009081
Hamap
MF_01217
64 138 75 17.022
IPR003231
TIGRFAM
TIGR00517
64 136 73 4.80E-24
IPR003231
ProSiteProfiles
PS50075
65 135 71 20.64
IPR009081
SMART
SM00823
66 120 55 0.0076
IPR020806
Pfam
PF00550
67 134 68 4.10E-11
IPR009081
ProSitePatterns
PS00012
93 108 16 –
IPR006162
ProDom
PD000887
95 135 41 1.00E-06
IPR003231

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006633
Biological process Fatty acid biosynthetic process The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
Subterm of
GO:0031177
Molecular function Phosphopantetheine binding Interacting selectively and non-covalently with phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate).
Subterm of

Genome browser

LORE1 insertions 1

Expression data

Expression pattern

Expression pattern of Lj5g3v1427780.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj5g3v1427780.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.