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Lj6g3v1918190.1

Overview

Field Value
Gene ID Lj6g3v1918190
Transcript ID Lj6g3v1918190.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: acyl carrier protein 1, chloroplastic-like [Cicer arietinum] gi|502078834|ref|XP_004486070.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP
SignalP-TM_GRAM_POSITIVE
1 26 26 – –
PANTHER
PTHR20863
1 139 139 5.90E-71 –
PANTHER
PTHR20863:SF29
1 139 139 5.90E-71 –
Gene3D
G3DSA:1.10.1200.10
46 138 93 6.20E-30
IPR009081
SUPERFAMILY
SSF47336
60 135 76 4.58E-17
IPR009081
Hamap
MF_01217
61 135 75 16.822
IPR003231
TIGRFAM
TIGR00517
61 133 73 4.70E-24
IPR003231
ProSiteProfiles
PS50075
62 132 71 20.252
IPR009081
SMART
SM00823
63 135 73 0.0023
IPR020806
Pfam
PF00550
64 131 68 4.80E-11
IPR009081
ProSitePatterns
PS00012
90 105 16 –
IPR006162
ProDom
PD000887
92 133 42 3.00E-08
IPR003231

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0006633
Biological process Fatty acid biosynthetic process The chemical reactions and pathways resulting in the formation of a fatty acid, any of the aliphatic monocarboxylic acids that can be liberated by hydrolysis from naturally occurring fats and oils. Fatty acids are predominantly straight-chain acids of 4 to 24 carbon atoms, which may be saturated or unsaturated; branched fatty acids and hydroxy fatty acids also occur, and very long chain acids of over 30 carbons are found in waxes.
Subterm of
GO:0031177
Molecular function Phosphopantetheine binding Interacting selectively and non-covalently with phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate).
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj6g3v1918190.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj6g3v1918190.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.