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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0478700 |
| Transcript ID | LotjaGi3g1v0478700.5 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Katanin p60 ATPase-containing subunit, putative; TAIR: AT2G27600.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q9ZNT0|VPS4_ARATH Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1; TrEMBL-Plants: tr|T2HVY3|T2HVY3_CUCSA Vacuolar protein sorting-associated protein 4-like; Found in the gene: LotjaGi3g1v0478700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:89483451..89487526) extracted from Lotus japonicus Gifu genome v1.2.
ATGTATAGCAATTTCAAGGAGCAAGCGATCGAGTACGTGAAGCAAGCGGTACACGAAGACAATGCTGGGAACTACGCAAA AGCCTTCCCTCTCTACATGAACGCCTTAGAGTACTTCAAAACGCATCTCAAATACGAGAAGAACCCTAAGATCAAAGAAG CCATCACGCAGCGTTTCACCGAGTATCTCCGCCGCGCCGAGGAGATCCGTGCTGTGCTTGATGATGGTGGCCCCGGCCCG GCTTCCAACGGGGACGCCGCTGTTGCTGCGCGGCCCAAGACGAAGCCTAAGGACGGCGGTGAAGGCGACGGCGGGGAGGA TCCTGAGCAGGCTAAGCTTCGTGCTGGGCTGAATTCTGCTATCATCAGGGAGAAGCCGAATATCAAGTGGAATGATGTTG CGGGGTTGGAGAGCGCTAAACAGTCCTTGCAGGAGGCGGTTATCTTGCCTGTCAAGTTCCCTCAGTTCTTCACTGGTGGG TTTTCTTCTATGGTTGCAATGAAATGAAATGATGGTTTATAGTTAACAATAATCATGGTTAGATTTATTAAACCGCCACG GCGTTTGAGGGCAATTGGGCATTTATTACAGCTAATGAGTTGAACTAGTGATATTTGATTCTCGGCGTAGTTAGAATGTT AGATATTATCTGTGTTCATGATTTAGGGTGCTTTTGATTAAACAACTTAATTAAGCTTGTCATTAATCACTTAAGCTGTT ATGCAAGTGTTTCGGTAAGTTGCTCATGAATAAGCGCCTATACGGCTATACCTATCTATAAGCTGTTTTAAGCTAATTTC AACAGACTTCTCAAATTAGCTTATGTGGTAAGCACTCAATTAAGTTGTTTACCCAAATGCAACTTTATTTCAAAAGGCCT TACTTACAAGCTTATTTAAGAAGCTAATTGAAATAATAAGAACTTATATGTTGGTATAAGTGTTGAGAACGTGAAGGTTA TCGAGATAAGCTTAAGAGTTTACAGGTTGGTTATAAACTAATTTTCATAAGCTAAATCAAACACTTGCTTGACTGCTTAT GCTATAAGATAAACTAAGATATCATATAGTTCATTAATGGAATGCTTGAAGAGAATAAAATGATGGGTTAAAATGAAACT TAATGTTCTAATCTCTAGTTCTTTTTTATCTACATTACACAGTTCTCTTAATTCAAAAATTAAAATTTATCTTTGCTTAT CCCCTTTTCATCCAATACCTTCAAAGTTCAAACGTAGACTAATTGTTTAATATGGTTTGCCATTGTGTATTTCAGGTAAA AGACGACCTTGGAGAGCTTTTTTGTTGTACGGACCACCTGGAACAGGTAAATCATACTTGGCCAAGGCCGTTGCAACAGA AGCTGATTCTACATTTTTCAGGTATATTTGTTTTGATATGTATAGTGTGTGTACTGATGTTAAGTTCATATTTGACTTTT CCACTTCTAAAGCAGCATTCACTAATGTGTATAGACTTTCTGGCCCTTATTTATGTTGTGGTTTGAGTTGCAAGCAGAAA AATTAAGAGGCTGATGAAATAAAAGTGTCAAAATGACTCATTTGATAATGTTAGTATGTTCTGAAAAAACTGTGTTCCTT TTGCTTTCAGTATCTAGGCAAAGTCTTAGGTGCCCAAGTTTTAATTCGTTTTTTATTTTGTATGCATGATAGTAATTTAC TTTCATGTACACGTGGGCATGCAATTTTATTGAGTTCTGCCTTGAAAATGATTTTATTGTGGAAAATGTCCTCTATATTT GACAATGATTTTGATGTGGGAAAGGTCTTCTATATTGTTATAATTATAATTAAGTCCATAGGTGAATATTTTCTTTGCAA CATATGTTAACTTTTGAATTCTTCACCAGTGTTTCTTCATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCT GGTTTCAAATCTTTTTCAAATGGCCCGCGAAAGTGCACCTTCTATCATATTTGTTGATGAAATTGATTCTCTCTGTGGTC AGCGTGGAGAGGGCAATGAGAGTGAAGCTTCAAGACGAATTAAAACTGAACTTCTAGTGCAGATGCAGGTACAATTTGTG GTCTCATGGCGGGGATATGTTCATAGAACAATAACTAGTTTTAGTTGATATTTGTATTGCATTATCCTGAGCAAGTCAAG AAGCCTGAGTCCCACTTTATGTAGCTGTAGTATATATGAATTATTCATGAAAATTTCTTTTGCCATAGTCAAATGTGATT AGTTTCATAAGTTCGTAGGTATTAACCATTTTGGCAACACTTAACTACTTTCATTTTCAAAAGTAGGTTTCTTGGCTGTG CCTTTACATTTGACAGAAATGTTTTTGAAGTTTGAAGGACCCAGAGGTATTGGGTACATATCAATTCACATTGCGTGTTC CAGTCTTTTGGATGAAAAAAGACAAGCCAAGCTTTCTGATATATACTCGTAGTTTGTTAGTTATGTTGACGTAGTTAGTT AGAGGGTTTGAGAGGGAATATTTTTAATAAGAGGCAGTTAGAGAGTATGGTAATCTTTTGGGGTGATTGTGGGAATTCTA GGGAGAGTGCTGGTTCTCTTGAACAACCAGTGACCATTGTAGTTCATTGCTATTCTTGAATAATAGTCGGTTCTTGTCCC TCATCTATCAATTGGTATCAGAGCACCATCCCAGGGTTGTTATTGCCCGGTCTTTTGATTGTTTAAGCATTTGCAATTAT TACCTTTTCTTTTGGTGTCCATAATTATTACGTAGACTATTTTTTTATCATGTCAGATTTTTCAAAGTTAGTTGGTTGAT GGTTTTTAGTCATCCAGAAAACTGCACACGCATTTTGATTAGTAATTCTCTATTCAATTTTGTTATTCTAGAAGCAACCT GTCTTAATTCTTTTTTTTCTTTCTGAAGCTGAAAACAGATAACTGGTATTCATATATTTTTAAATTCTGTCTGTCCTTTC CCTCACCCACACAATAAATTCATCCACTTAATGCATGTTAATGTTGAAACATGTCTGCCACATTTTTATTATTTTCTTCA CGGTAATTTATTATTATGCTCCAGCATTTTCCTAATTCATAAAAGTCAAGGTTCCCAACAGCTTTGGTGTCAGTCCTCTT TGTGCTTTTTGTATTTATGTCCAAGTCCAATCATAATGTAGTTTATCCACTTCACATTGTAGGGTGTAGGAAACAATGAT CAGAAAGTTCTTGTTCTTGCAGCAACAAATACACCTTATGCTCTCGATCAGGTAAGAAGAAAATAGTTCTGTTTGTTTGT TAATGTGTGATTCTGTTTTGATGAATGAACTTGTAATTGCAGGCAATAAGGCGGCGCTTTGATAAGCGTATATACATTCC ACTGCCAGATGTGAAGGCTCGCCAACACATGTTCAAGGCAAGGTCACGAGTCGTGATTATGTGTATTGAAGGATAGCACG TATTGGGTTATAATCTAGCAAATGATCTTACCATGTTTTTCTTGTGGGCTTGCTAAATTGAACAGGTGCATTTAGGAGAT ACTCCCCATAACTTGGCTGAAAGTGATTTTGAACACTTGGCTCGCAAGACAGAGGGATTTTCTGGTTCAGATATATCTGT CTGTGTAAGTTTGACTTCTATATGAAATGCTTTATTGCAGTTCTCATGTTATATGGATGAGTTTGATGCTGAAGTTATTT GTACATCTTCTATAGGTGAAAGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTAAGAGTCC TGAGGGTATGTGGATTCCATGCGGACCAAAGCAACAGGGTGCAATACAAATAACAATGCAAGACCTTGCTACAAAAGGTC TTGCTTCTCAGGTATTTAAGATGCTGTAGATTTTCATTACAGTGGAAAGTAGGACTTCTCAAAATGATAACTGGTATCTG AGAGTTTATATGTTATTGTTTTCTATCCAGATCCTTCCGCCACCTATATCAAGAACCGATTTTGACAAAGTACTTGCCAG ACAAAGGCCTACAGTAAGCAAGTCTGACCTTGAAGTCCACGAGAGATTCACAAAGGAGTTTGGAGAGGAAGGTTAA
CDS sequence (LotjaGi3g1v0478700.5) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATAGCAATTTCAAGGAGCAAGCGATCGAGTACGTGAAGCAAGCGGTACACGAAGACAATGCTGGGAACTACGCAAA AGCCTTCCCTCTCTACATGAACGCCTTAGAGTACTTCAAAACGCATCTCAAATACGAGAAGAACCCTAAGATCAAAGAAG CCATCACGCAGCGTTTCACCGAGTATCTCCGCCGCGCCGAGGAGATCCGTGCTGTGCTTGATGATGGTGGCCCCGGCCCG GCTTCCAACGGGGACGCCGCTGTTGCTGCGCGGCCCAAGACGAAGCCTAAGGACGGCGGTGAAGGCGACGGCGGGGAGGA TCCTGAGCAGGCTAAGCTTCGTGCTGGGCTGAATTCTGCTATCATCAGGGAGAAGCCGAATATCAAGTGGAATGATGTTG CGGGGTTGGAGAGCGCTAAACAGTCCTTGCAGGAGGCGGTTATCTTGCCTGTCAAGTTCCCTCAGTTCTTCACTGGTAAA AGACGACCTTGGAGAGCTTTTTTGTTGTACGGACCACCTGGAACAGGTAAATCATACTTGGCCAAGGCCGTTGCAACAGA AGCTGATTCTACATTTTTCAGTGTTTCTTCATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAA ATCTTTTTCAAATGGCCCGCGAAAGTGCACCTTCTATCATATTTGTTGATGAAATTGATTCTCTCTGTGGTCAGCGTGGA GAGGGCAATGAGAGTGAAGCTTCAAGACGAATTAAAACTGAACTTCTAGTGCAGATGCAGGGTGTAGGAAACAATGATCA GAAAGTTCTTGTTCTTGCAGCAACAAATACACCTTATGCTCTCGATCAGGTGCATTTAGGAGATACTCCCCATAACTTGG CTGAAAGTGATTTTGAACACTTGGCTCGCAAGACAGAGGGATTTTCTGGTTCAGATATATCTGTCTGTGTGAAAGATGTT TTATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTAAGAGTCCTGAGGGTATGTGGATTCCATGCGGACC AAAGCAACAGGGTGCAATACAAATAACAATGCAAGACCTTGCTACAAAAGGTCTTGCTTCTCAGATCCTTCCGCCACCTA TATCAAGAACCGATTTTGACAAAGTACTTGCCAGACAAAGGCCTACAGTAAGCAAGTCTGACCTTGAAGTCCACGAGAGA TTCACAAAGGAGTTTGGAGAGGAAGGTTAA
Protein sequence (LotjaGi3g1v0478700.5) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYSNFKEQAIEYVKQAVHEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQRFTEYLRRAEEIRAVLDDGGPGP ASNGDAAVAARPKTKPKDGGEGDGGEDPEQAKLRAGLNSAIIREKPNIKWNDVAGLESAKQSLQEAVILPVKFPQFFTGK RRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRG EGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQVHLGDTPHNLAESDFEHLARKTEGFSGSDISVCVKDV LFEPVRKTQDAMFFFKSPEGMWIPCGPKQQGAIQITMQDLATKGLASQILPPPISRTDFDKVLARQRPTVSKSDLEVHER FTKEFGEEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 283 | 283 | 4.5E-253 | – | |
| PANTHER | 1 | 283 | 283 | 4.5E-253 | – | |
| SMART | 2 | 79 | 78 | 3.2E-24 | ||
| SUPERFAMILY | 2 | 81 | 80 | 1.44E-24 | ||
| CDD | 4 | 77 | 74 | 4.81884E-37 | – | |
| Gene3D | 6 | 75 | 70 | 2.1E-24 | – | |
| Pfam | 7 | 70 | 64 | 1.4E-20 | ||
| MobiDBLite | 73 | 110 | 38 | - | – | |
| MobiDBLite | 91 | 110 | 20 | - | – | |
| SUPERFAMILY | 121 | 360 | 240 | 7.52E-47 | ||
| Gene3D | 126 | 283 | 158 | 7.3E-81 | – | |
| CDD | 134 | 282 | 149 | 1.07606E-21 | – | |
| SMART | 163 | 312 | 150 | 6.5E-14 | ||
| Pfam | 168 | 283 | 116 | 5.7E-38 | ||
| PANTHER | 283 | 408 | 126 | 4.5E-253 | – | |
| PANTHER | 283 | 408 | 126 | 4.5E-253 | – | |
| Gene3D | 284 | 388 | 105 | 4.0E-21 | – | |
| Pfam | 296 | 329 | 34 | 2.6E-6 | ||
| Pfam | 342 | 406 | 65 | 4.0E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi3g1v0478700.5, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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