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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0478700 |
| Transcript ID | LotjaGi3g1v0478700.3 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Katanin p60 ATPase-containing subunit, putative; TAIR: AT2G27600.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q9ZNT0|VPS4_ARATH Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1; TrEMBL-Plants: tr|A0A1J7HFS6|A0A1J7HFS6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0478700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:89483187..89488026) extracted from Lotus japonicus Gifu genome v1.2.
ATTAAATCCTAAATAAAAATCCATTATCTCTCGAACAAGTTGAGAGCATTCAAAGTTTCAACTCTGTCTTGTTAGATTCC ACACATTAACCTTCTCTGACTCCTTCCTTTACTTTTCCAATCAACAAACACCGATCACAATTAAATTTCCCCCAAAACGA TGTCGTTGCAGCACCACCTCTAGGGTTTGCGATTCTCGATCATCATCATCATCATCATCATCTGCAGGTAGCAGAATCCG AATCCGAATTCAAAGAAGAAGACGATGTATAGCAATTTCAAGGAGCAAGCGATCGAGTACGTGAAGCAAGCGGTACACGA AGACAATGCTGGGAACTACGCAAAAGCCTTCCCTCTCTACATGAACGCCTTAGAGTACTTCAAAACGCATCTCAAATACG AGAAGAACCCTAAGATCAAAGAAGCCATCACGCAGCGTTTCACCGAGTATCTCCGCCGCGCCGAGGAGATCCGTGCTGTG CTTGATGATGGTGGCCCCGGCCCGGCTTCCAACGGGGACGCCGCTGTTGCTGCGCGGCCCAAGACGAAGCCTAAGGACGG CGGTGAAGGCGACGGCGGGGAGGATCCTGAGCAGGCTAAGCTTCGTGCTGGGCTGAATTCTGCTATCATCAGGGAGAAGC CGAATATCAAGTGGAATGATGTTGCGGGGTTGGAGAGCGCTAAACAGTCCTTGCAGGAGGCGGTTATCTTGCCTGTCAAG TTCCCTCAGTTCTTCACTGGTGGGTTTTCTTCTATGGTTGCAATGAAATGAAATGATGGTTTATAGTTAACAATAATCAT GGTTAGATTTATTAAACCGCCACGGCGTTTGAGGGCAATTGGGCATTTATTACAGCTAATGAGTTGAACTAGTGATATTT GATTCTCGGCGTAGTTAGAATGTTAGATATTATCTGTGTTCATGATTTAGGGTGCTTTTGATTAAACAACTTAATTAAGC TTGTCATTAATCACTTAAGCTGTTATGCAAGTGTTTCGGTAAGTTGCTCATGAATAAGCGCCTATACGGCTATACCTATC TATAAGCTGTTTTAAGCTAATTTCAACAGACTTCTCAAATTAGCTTATGTGGTAAGCACTCAATTAAGTTGTTTACCCAA ATGCAACTTTATTTCAAAAGGCCTTACTTACAAGCTTATTTAAGAAGCTAATTGAAATAATAAGAACTTATATGTTGGTA TAAGTGTTGAGAACGTGAAGGTTATCGAGATAAGCTTAAGAGTTTACAGGTTGGTTATAAACTAATTTTCATAAGCTAAA TCAAACACTTGCTTGACTGCTTATGCTATAAGATAAACTAAGATATCATATAGTTCATTAATGGAATGCTTGAAGAGAAT AAAATGATGGGTTAAAATGAAACTTAATGTTCTAATCTCTAGTTCTTTTTTATCTACATTACACAGTTCTCTTAATTCAA AAATTAAAATTTATCTTTGCTTATCCCCTTTTCATCCAATACCTTCAAAGTTCAAACGTAGACTAATTGTTTAATATGGT TTGCCATTGTGTATTTCAGGTAAAAGACGACCTTGGAGAGCTTTTTTGTTGTACGGACCACCTGGAACAGGTAAATCATA CTTGGCCAAGGCCGTTGCAACAGAAGCTGATTCTACATTTTTCAGGTATATTTGTTTTGATATGTATAGTGTGTGTACTG ATGTTAAGTTCATATTTGACTTTTCCACTTCTAAAGCAGCATTCACTAATGTGTATAGACTTTCTGGCCCTTATTTATGT TGTGGTTTGAGTTGCAAGCAGAAAAATTAAGAGGCTGATGAAATAAAAGTGTCAAAATGACTCATTTGATAATGTTAGTA TGTTCTGAAAAAACTGTGTTCCTTTTGCTTTCAGTATCTAGGCAAAGTCTTAGGTGCCCAAGTTTTAATTCGTTTTTTAT TTTGTATGCATGATAGTAATTTACTTTCATGTACACGTGGGCATGCAATTTTATTGAGTTCTGCCTTGAAAATGATTTTA TTGTGGAAAATGTCCTCTATATTTGACAATGATTTTGATGTGGGAAAGGTCTTCTATATTGTTATAATTATAATTAAGTC CATAGGTGAATATTTTCTTTGCAACATATGTTAACTTTTGAATTCTTCACCAGTGTTTCTTCATCAGACCTGGTTTCAAA GTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAATCTTTTTCAAATGGCCCGCGAAAGTGCACCTTCTATCATATTTGTTG ATGAAATTGATTCTCTCTGTGGTCAGCGTGGAGAGGGCAATGAGAGTGAAGCTTCAAGACGAATTAAAACTGAACTTCTA GTGCAGATGCAGGTACAATTTGTGGTCTCATGGCGGGGATATGTTCATAGAACAATAACTAGTTTTAGTTGATATTTGTA TTGCATTATCCTGAGCAAGTCAAGAAGCCTGAGTCCCACTTTATGTAGCTGTAGTATATATGAATTATTCATGAAAATTT CTTTTGCCATAGTCAAATGTGATTAGTTTCATAAGTTCGTAGGTATTAACCATTTTGGCAACACTTAACTACTTTCATTT TCAAAAGTAGGTTTCTTGGCTGTGCCTTTACATTTGACAGAAATGTTTTTGAAGTTTGAAGGACCCAGAGGTATTGGGTA CATATCAATTCACATTGCGTGTTCCAGTCTTTTGGATGAAAAAAGACAAGCCAAGCTTTCTGATATATACTCGTAGTTTG TTAGTTATGTTGACGTAGTTAGTTAGAGGGTTTGAGAGGGAATATTTTTAATAAGAGGCAGTTAGAGAGTATGGTAATCT TTTGGGGTGATTGTGGGAATTCTAGGGAGAGTGCTGGTTCTCTTGAACAACCAGTGACCATTGTAGTTCATTGCTATTCT TGAATAATAGTCGGTTCTTGTCCCTCATCTATCAATTGGTATCAGAGCACCATCCCAGGGTTGTTATTGCCCGGTCTTTT GATTGTTTAAGCATTTGCAATTATTACCTTTTCTTTTGGTGTCCATAATTATTACGTAGACTATTTTTTTATCATGTCAG ATTTTTCAAAGTTAGTTGGTTGATGGTTTTTAGTCATCCAGAAAACTGCACACGCATTTTGATTAGTAATTCTCTATTCA ATTTTGTTATTCTAGAAGCAACCTGTCTTAATTCTTTTTTTTCTTTCTGAAGCTGAAAACAGATAACTGGTATTCATATA TTTTTAAATTCTGTCTGTCCTTTCCCTCACCCACACAATAAATTCATCCACTTAATGCATGTTAATGTTGAAACATGTCT GCCACATTTTTATTATTTTCTTCACGGTAATTTATTATTATGCTCCAGCATTTTCCTAATTCATAAAAGTCAAGGTTCCC AACAGCTTTGGTGTCAGTCCTCTTTGTGCTTTTTGTATTTATGTCCAAGTCCAATCATAATGTAGTTTATCCACTTCACA TTGTAGGGTGTAGGAAACAATGATCAGAAAGTTCTTGTTCTTGCAGCAACAAATACACCTTATGCTCTCGATCAGGTAAG AAGAAAATAGTTCTGTTTGTTTGTTAATGTGTGATTCTGTTTTGATGAATGAACTTGTAATTGCAGGCAATAAGGCGGCG CTTTGATAAGCGTATATACATTCCACTGCCAGATGTGAAGGCTCGCCAACACATGTTCAAGGCAAGGTCACGAGTCGTGA TTATGTGTATTGAAGGATAGCACGTATTGGGTTATAATCTAGCAAATGATCTTACCATGTTTTTCTTGTGGGCTTGCTAA ATTGAACAGGTGCATTTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATTTTGAACACTTGGCTCGCAAGACAGAGGG ATTTTCTGGTTCAGATATATCTGTCTGTGTAAGTTTGACTTCTATATGAAATGCTTTATTGCAGTTCTCATGTTATATGG ATGAGTTTGATGCTGAAGTTATTTGTACATCTTCTATAGGTGAAAGATGTTTTATTTGAACCTGTTCGCAAAACCCAAGA TGCCATGTTTTTCTTTAAGAGTCCTGAGGGTATGTGGATTCCATGCGGACCAAAGCAACAGGGTGCAATACAAATAACAA TGCAAGACCTTGCTACAAAAGGTCTTGCTTCTCAGGTATTTAAGATGCTGTAGATTTTCATTACAGTGGAAAGTAGGACT TCTCAAAATGATAACTGGTATCTGAGAGTTTATATGTTATTGTTTTCTATCCAGATCCTTCCGCCACCTATATCAAGAAC CGATTTTGACAAAGTACTTGCCAGACAAAGGCCTACAGTAAGCAAGTCTGACCTTGAAGTCCACGAGAGATTCACAAAGG AGTTTGGAGAGGAAGGTTAATTGTGATGGGATTTGCATCGAAGATCCACTGTTTTAAACATAATGTTATGATCTGTAACT TACTGAGCTATTGGATCAAGTAAATGCACCTTTTTTATTTGTTATTAGGGATGTGAATTCCCCTCCTGTACGAAAGTGAA TTTATAGAAGTGGATACACTTATTTGCTTCTCCTAAATTGTGTATAAAAAAATCTGAATTCATCAGAAAAATAAATTGTA TGTGATACTGGTTTCTTATGTTCGCTCTGTATTTTGAACGCATGTTTCACAAATTTAAAGTATTGAGTGCTTTTCCAATT CCAAAATGGATGAGAATTTCAGCTGGTACACTTGACCAAGTTACTGCCGTACGAGAGTGTGTTTATGAATAATTCAAGTA CGAATCCAATAGCCGTTTATAAGTCTTCCAAGTGCCACTAGTTCGTTGAACATGTACAAACATGTACTGCTCTTATTATA TCCTCTTTTAAATTCGATTATACTTCTTAAAGAATCCCAA
CDS sequence (LotjaGi3g1v0478700.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATAGCAATTTCAAGGAGCAAGCGATCGAGTACGTGAAGCAAGCGGTACACGAAGACAATGCTGGGAACTACGCAAA AGCCTTCCCTCTCTACATGAACGCCTTAGAGTACTTCAAAACGCATCTCAAATACGAGAAGAACCCTAAGATCAAAGAAG CCATCACGCAGCGTTTCACCGAGTATCTCCGCCGCGCCGAGGAGATCCGTGCTGTGCTTGATGATGGTGGCCCCGGCCCG GCTTCCAACGGGGACGCCGCTGTTGCTGCGCGGCCCAAGACGAAGCCTAAGGACGGCGGTGAAGGCGACGGCGGGGAGGA TCCTGAGCAGGCTAAGCTTCGTGCTGGGCTGAATTCTGCTATCATCAGGGAGAAGCCGAATATCAAGTGGAATGATGTTG CGGGGTTGGAGAGCGCTAAACAGTCCTTGCAGGAGGCGGTTATCTTGCCTGTCAAGTTCCCTCAGTTCTTCACTGGTAAA AGACGACCTTGGAGAGCTTTTTTGTTGTACGGACCACCTGGAACAGGTAAATCATACTTGGCCAAGGCCGTTGCAACAGA AGCTGATTCTACATTTTTCAGTGTTTCTTCATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAA ATCTTTTTCAAATGGCCCGCGAAAGTGCACCTTCTATCATATTTGTTGATGAAATTGATTCTCTCTGTGGTCAGCGTGGA GAGGGCAATGAGAGTGAAGCTTCAAGACGAATTAAAACTGAACTTCTAGTGCAGATGCAGGGTGTAGGAAACAATGATCA GAAAGTTCTTGTTCTTGCAGCAACAAATACACCTTATGCTCTCGATCAGGCAATAAGGCGGCGCTTTGATAAGCGTATAT ACATTCCACTGCCAGATGTGAAGGCTCGCCAACACATGTTCAAGGCAAGGTGCATTTAG
Protein sequence (LotjaGi3g1v0478700.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYSNFKEQAIEYVKQAVHEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQRFTEYLRRAEEIRAVLDDGGPGP ASNGDAAVAARPKTKPKDGGEGDGGEDPEQAKLRAGLNSAIIREKPNIKWNDVAGLESAKQSLQEAVILPVKFPQFFTGK RRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRG EGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDVKARQHMFKARCI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 309 | 309 | 7.2E-210 | – | |
| PANTHER | 1 | 309 | 309 | 7.2E-210 | – | |
| SUPERFAMILY | 2 | 81 | 80 | 9.29E-25 | ||
| SMART | 2 | 79 | 78 | 3.2E-24 | ||
| CDD | 4 | 77 | 74 | 3.59107E-36 | – | |
| Gene3D | 6 | 75 | 70 | 1.4E-24 | – | |
| Pfam | 7 | 70 | 64 | 8.9E-21 | ||
| MobiDBLite | 73 | 110 | 38 | - | – | |
| MobiDBLite | 91 | 110 | 20 | - | – | |
| SUPERFAMILY | 122 | 312 | 191 | 6.58E-52 | ||
| Gene3D | 126 | 298 | 173 | 3.0E-96 | – | |
| CDD | 134 | 297 | 164 | 5.10621E-26 | – | |
| SMART | 163 | 299 | 137 | 2.6E-19 | ||
| Pfam | 168 | 297 | 130 | 6.0E-44 | ||
| ProSitePatterns | 269 | 288 | 20 | - | ||
| Gene3D | 299 | 310 | 12 | 3.0E-96 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi3g1v0478700.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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