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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0175600 |
| Transcript ID | LotjaGi3g1v0175600.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Katanin p60 ATPase-containing subunit, putative; TAIR: AT2G27600.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q9ZNT0|VPS4_ARATH Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1; TrEMBL-Plants: tr|I1LTU5|I1LTU5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0175600 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:24413446..24419040) extracted from Lotus japonicus Gifu genome v1.2.
GTTTTTTAACGTCAAGGACTAAAGTGACGGACGTTTGCCACTTTGGGGGACCACGAGCAGAATAAAATTCATTCAGGGAC GAATGTGAAGTCGGTTGACACTTTCAAGGACCAAAGTGACCATTTACCCGCACTGAAATTAAATTTTTTGTTTGTAATTT TTTGATCAAAAAATAAAATAAAATTTGTTTGTAATTTCGATGAATTTTCTTGGGAGGGATACTCCTTTTTCTTCTTCATG ATATTCAAACGCGTATTTTCAGGTTCCCTTTTGTCCAGTCCTTTCCCTTTCTTCCATCTCCCTCCGATCAGATCCTCCTC AGCATCACCTTCCAATTCACCCAGCTAGGGTTTCAAAATCGACCCCAATTTCCCTCTTTTCCCCAAACCCATCGAAACAC GATCATCGTGTTGCTAATCTAGGGTTTCCCCTTAATCTTCGAACTTCGATTGATTCCCTGTATATGCAATTCGGAAGAAG AAGATGTATAGCAATTTCAAGGAGCAAGCAATAGAGTACGTGAAGCAAGCGGTGCAGGAAGACAATGCTGGAAACTACGC CAAAGCCTTCCCTCTCTACATGAACGCTTTGGAGTATTTCAAGACCCATCTCAAGTACGAGAAGAATCCTAAGATCAAGG AAGCGATTACGCAGAAATTCACCGAGTATTTGCGCCGCGCGGAGGAGATCAGGGCTGTTCTAGATGACGGAGGACCCGGC CCGGCTTCTAATGGGGACGCTGCTGTGGCCACGCGGCCGAAGACGAAGCCGAAGGATGGGGAAGGTGGAGATGGGGAGGA TCCCGAGCAGGCGAAGCTCCGGGCCGGGTTGAACTCGGCGATTATAAGGGAGAAGCCGAATGTGAAGTGGAATGATGTTG CTGGGTTGGAGAGTGCGAAGCAGGCGTTGCAGGAGGCTGTGATCTTGCCTGTGAAGTTCCCTCAGTTTTTCACAGGTTGG TTTGCTTCATTCATCACTGTTAGTTGCTAACCATTAGTTGCTCAATGTTTGATTTTTCTAGTTACAAAGTTATGTAATTG AAACTGGGCATCATGAGCTAGAGGCATTCTATTTATGCATCTTATTGAGGGTTGAGGATAGCAATTTTATTTGGTTGAAA CATTCTTTTGTAGCTAAGGTGGTGTTTGGTAGATATGTTACAACTAAATAGGACCTATAGGTTTTGCTCTATGTTTGTTG CATATATATTAGAAGTAGAACAGAACAAGACATAAAGTGTGAAAAGTGCTACATTTTGGTTCGATTTAAAACGGTGGAAT CAAAGAGAACTCAGTAGTTATATTTATATTTTTTGCTCAGTCCACATGTCAAGTGCTGCCTAAGGGTCCGCTTGTTTCAG TGGGTTGAAAGTTGAAGGGGGAATTGGAGGAAGGAGTAAATAATTTCAAGTTTTCAAGCAAAGTTGTGCCCTTGAGTGAA AATGATTTACATTTTACTTTTCACCTTCTCATACTTTTGCTATGCCAAACCAGTGTGAAGTGGATTTCTTTCTAAACTTT CCATCTTTCAACTTTCTGCATACACTTACATGCTGGCCTTCAATTAGAACTGATGAAAACCTTGTTATATGAACAAGATA CCATGTTTATACATTTATTTATTTATATGGAATTTTGTTAAATGTTGAATATGTTTCCCCGTGGTCTTTTTCAGGTAAGC GAAGACCCTGGAGAGCATTTTTATTGTATGGACCACCTGGAACAGGAAAATCATATTTAGCCAAGGCAGTTGCAACAGAA GCTGACTCCACATTTTTCAGGTAAATTTATTCTGCTACCTAGTACCTACATTTCATATTAACTGTCCAGAAAGATAAGAA ACATAAAATGCAATTAATGTTGTTAACTTTCGGAAAAGATTTTTATTTCTTCCTATTTTACCCTTTAAAATGATTTTTTA TGTCTCCTCATTTATTATTCGGATGATGGCATTATTTGGAAAAAAACATCAATTAATGCTCTTTTGAAATTCTAAGTGAA CATAATAAAGTTCACTCGAGGAAAATCTGATTACAACAATGAAGTTTATAGGATTGCGAAATCTCCAATCTGGAACTTAC CGAATTAGAAGGAAAATCCTTGGATTGAATCCATATTCATACATGGATATATACAGGGTTGTTAATAGCGCGTGGCCGCG CGCTATTGTGGCGGAGCGTGGCGGCACGACGGCTGGAGGCTGTAGCGGCGCAGAAATCGCGTAGCAGTGGTTGTGCCCGG GATTGTACCCAAAATCGTGTCTGGTGCGGCGCGAAGGGAAAAGAGGGATCACAAACCCTACTAATCCGAGTGAAAATCCC AAATTCCCCCAGTTTTAAACATTAGTTCAAACTTTTTAAGGGCATTTTGAGGCTTTCTTTCCATTTAGAGCCTCCGTGCA ATCTCCTTTTTTTCCCGATGAAGTTGTGCGATCTCCTTCCTCTTCCTCCTTCCAGCCACCTTCTTCCTTCTCCTGCAGCG TAGCGGCTATAACTCTACCTGCCATAGCGCTACACGCTATAGCGTTTTTTGGGCTTGCTGCTACGCTGCACCCTTTTATC AGCATTGAAATTGAATTGGAAGTAAGAAATCTTATAAGACTAAAAGACTTTCCCTAACCATAATTACGTTAAGGGTACCT AAATAAACTAAATAAAATTGGAGTTCGTAACAAGAATGGAGATTAATCTGAATTTTTTTTTTTTACTTTTCTATCAATCT TTTACTTTGTGTTTGGATAAACAAAAGAGGAACTAGAATGAAAATGGTTTAGCTTCTTTGGTTTAAAATAATACTAAAAG TTAATGAATTATGTCGGGTGGTGCCATGATTCATTAATATTTGCTGATGGCGTAGCATTTAGAAGATGGCATGCATGGTT ATAATTTCCTTCAAATTCATCCTCTAACGTTCTTTTGTGTTTTGACAATAATTTTGTTTGTAATGAGAATTTGAGATGCA TTTAATATTTATTTTAAAAAAGGCCTTCTGTATTGCTATGAATGTAGGTCCATAAGTGGACATGTTCTTGCAAGCGTTTT TAACTTTTGAATTCTTCACCAGTATTTCTTCATCAGACCTTGTTTCAAAGTGGATGGGTGAGAGTGAAAAGCTGGTGTCA AACCTTTTCCAAATGGCTCGAGAAAATGCCCCTTCTATCATATTTGTTGATGAAATAGATTCCCTATGTGGTCAGCGCGG AGAAGGCAATGAGAGTGAAGCTTCAAGACGGATTAAAACAGAACTTCTGGTGCAGATGCAGGTAATATTTTTATGGTGAG GATTTGTTGTCAAGCTGAGAAATTAGTTTGTTTGTTTATATTTGAATTGCATTATGCACAGCACGAGTCACGACTAAAAG TTGTCAAGAAGCCTTAGTCCCAGTTATATATAGATCGGAGTCCTTTATCAAAATAGTTTCAAATCATGAAAAAAACATAA TATATTTTTGAATTCTTTAATATAAACCATTTAGGCATAAGCTTGCTTGTATTGCGATTCTATTTAATATGTAGGTTTCC TTGGGTTCTGTTCTGTCTGTGCTTTTGATACTGTTTCAAGAACTTGGAGGTGTCGTAAAACTGAGCGCTTATTAATTTGT GTTGCATGCTTTAATTTTTTCCTGTTGGAATAAAAATAATATAGGTTTTTGTGGCAATTGCTGTTTTACAATTTTTCTTG TTTGTGTGTGAATTGTGATTTGTTTATATAGTCAACATGTTCGACTTTTTTTAGTTTGTGTTTTCAATGGGATATATGTT TAGTGTTATGTAACTGAACTACTAAAGCATGTTCTACTGGGTATCAAACACTCTGAAGCGTGTAATTGTTCTTGCCTTCG TTCCTATCCTTCACCTCAAATTTTGTATAGTTACTTGGTTTGTAGTCATCCAGACCAGAAAGTTTGCATGCAACTTTTGA TTAATAGATCTGGTCAGAATTTGCCCCCCCCCCCCCCCCAAAGAAAAGTCCCCAAATGTATATTATTATCAAAAAATTGA ATTGGTTATCTATATATTTATGTTTATTTGATTCACTTTTTTGTTATTAACATCAATGTTGGTTCCAACAGTTTTGATCG ATGTTCTCCCTTTTCTATTTTTCTTTATTCAGCCTAGTTTTTCCACTTTGCATTGCAGGGTGTAGGAAACAATGATCAGA AAGTTCTTGTTCTTGCAGCAACAAACACACCCTATGCTCTAGACCAGGTAAGAAATAATTCTGTTGATGTGTATCCATAT AGAGCCTATATAATGTTGTTCAATCAATCTGTAATTTCAGGCAATAAGGCGTCGTTTTGATAAGCGTATATATATTCCTC TACCAGATTTGAAGGCCCGCCAACACATGTTCAAGGTAGGGCAATTTGCATGATTATGAGTTATGCATTTTATTGGGCTT GATATTATTCATCTACCAAAATGGGTTTATAATGCTATTTTTTTTGGCTTGATATATTGAGCAGGTACATCTCGGAGATA CCCCCCATAACTTGAATGAAAGTGATTTTGAATACTTGGCCAGCAGAACAGAGGGGTTTTCTGGTTCAGATATCTCTGTT TGTGTAAGTTTCAACTTTATTATGAATTATCTGGTTTTTATAAGCTTTTACTTTGATGAATTTAAAGTAAAATGTTTTTT GTCCTCTTTAGGTGAAGGATGTTTTATTTGAACCTGTCCGCAAAACCCAAGATGCTATGTTCTTCTTTAAGAATCCTGAG GGTATGTGGATCCCATGTGGACCAAAGCAACAGGGTGCAGTGCAAATCACAATGCAGGATCTTGCTGCAAAAGGCCTTGC TTCTCAGGTATTTTAGATGCTATAGATTTTGATGGCACTAGGAAGTCTCTCTCGTTCTCCCTCAACGATAATTGGAGAAG CAGAGTCATTATGTTTTTGGACTAGGTTGTTCATATGTATTTTTAATCCAAGTGGCGGAAGTGCTTACTGCTTTAAAACT GATGCAGATCCTTCCACCCCCTATAACGAGAACAGATTTTGAAAAGGTACTGGCTAGACAAAGACCTACAGTAAGCAAAA AAGACCTTGAGGTTCATGAGAGATTCACTAAGGAGTTTGGAGAAGAAGGTTAACGACGATGGAATCACATTGGCGTTATA TTTTATAGTTTGTAACTTATTTAGCTGTTGGATAGAGTGAAATACATCTTTTCCATTTTGTTTTGGGGATGTCAAGTTCC CTTGTGTAACGGAGTTGGATTTATAAATGTGTATACACTTTTTTCCTGAAAATGTGGATGCTCATTTTGTTTCTCCTAAA TTGTGTATAGCGGAATTTGAAATGATTAGAAACATAAAAAATAACTTGTGTAATACTCTGGTTTATTTGATCTTCTATGA ATGGTGCGCAAAAGTTGGGTTGCCATAGACTTGGGTACTCTTCATATTTGAAGATGGATTTCTTTTTTTGGGTCAATACT ACAAATTCTGATTAAGAAATCATAAAATCTGCTTGTATCTTAATTTTGAATGTGATGATAGAAATTATTGTCTATTACTT TACAAATAGGTGTTACATAATTTCCTTTCTATTGTTTCCACTCATTCTTGTACTGTACATTCACTTGTATAAAGT
CDS sequence (LotjaGi3g1v0175600.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATAGCAATTTCAAGGAGCAAGCAATAGAGTACGTGAAGCAAGCGGTGCAGGAAGACAATGCTGGAAACTACGCCAA AGCCTTCCCTCTCTACATGAACGCTTTGGAGTATTTCAAGACCCATCTCAAGTACGAGAAGAATCCTAAGATCAAGGAAG CGATTACGCAGAAATTCACCGAGTATTTGCGCCGCGCGGAGGAGATCAGGGCTGTTCTAGATGACGGAGGACCCGGCCCG GCTTCTAATGGGGACGCTGCTGTGGCCACGCGGCCGAAGACGAAGCCGAAGGATGGGGAAGGTGGAGATGGGGAGGATCC CGAGCAGGCGAAGCTCCGGGCCGGGTTGAACTCGGCGATTATAAGGGAGAAGCCGAATGTGAAGTGGAATGATGTTGCTG GGTTGGAGAGTGCGAAGCAGGCGTTGCAGGAGGCTGTGATCTTGCCTGTGAAGTTCCCTCAGTTTTTCACAGGTAAGCGA AGACCCTGGAGAGCATTTTTATTGTATGGACCACCTGGAACAGGAAAATCATATTTAGCCAAGGCAGTTGCAACAGAAGC TGACTCCACATTTTTCAGTATTTCTTCATCAGACCTTGTTTCAAAGTGGATGGGTGAGAGTGAAAAGCTGGTGTCAAACC TTTTCCAAATGGCTCGAGAAAATGCCCCTTCTATCATATTTGTTGATGAAATAGATTCCCTATGTGGTCAGCGCGGAGAA GGCAATGAGAGTGAAGCTTCAAGACGGATTAAAACAGAACTTCTGGTGCAGATGCAGGGTGTAGGAAACAATGATCAGAA AGTTCTTGTTCTTGCAGCAACAAACACACCCTATGCTCTAGACCAGGCAATAAGGCGTCGTTTTGATAAGCGTATATATA TTCCTCTACCAGATTTGAAGGCCCGCCAACACATGTTCAAGGTACATCTCGGAGATACCCCCCATAACTTGAATGAAAGT GATTTTGAATACTTGGCCAGCAGAACAGAGGGGTTTTCTGGTTCAGATATCTCTGTTTGTGTGAAGGATGTTTTATTTGA ACCTGTCCGCAAAACCCAAGATGCTATGTTCTTCTTTAAGAATCCTGAGGGTATGTGGATCCCATGTGGACCAAAGCAAC AGGGTGCAGTGCAAATCACAATGCAGGATCTTGCTGCAAAAGGCCTTGCTTCTCAGATCCTTCCACCCCCTATAACGAGA ACAGATTTTGAAAAGGTACTGGCTAGACAAAGACCTACAGTAAGCAAAAAAGACCTTGAGGTTCATGAGAGATTCACTAA GGAGTTTGGAGAAGAAGGTTAA
Protein sequence (LotjaGi3g1v0175600.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYSNFKEQAIEYVKQAVQEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQKFTEYLRRAEEIRAVLDDGGPGP ASNGDAAVATRPKTKPKDGEGGDGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKR RPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARENAPSIIFVDEIDSLCGQRGE GNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLNES DFEYLASRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKNPEGMWIPCGPKQQGAVQITMQDLAAKGLASQILPPPITR TDFEKVLARQRPTVSKKDLEVHERFTKEFGEEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 432 | 432 | 1.3E-285 | – | |
| PANTHER | 1 | 432 | 432 | 1.3E-285 | – | |
| SMART | 2 | 79 | 78 | 3.1E-25 | ||
| SUPERFAMILY | 2 | 81 | 80 | 7.98E-26 | ||
| CDD | 4 | 77 | 74 | 2.19847E-37 | – | |
| Gene3D | 6 | 75 | 70 | 4.4E-25 | – | |
| Pfam | 7 | 70 | 64 | 1.7E-21 | ||
| MobiDBLite | 73 | 109 | 37 | - | – | |
| MobiDBLite | 91 | 109 | 19 | - | – | |
| Gene3D | 125 | 421 | 297 | 1.7E-126 | – | |
| SUPERFAMILY | 125 | 429 | 305 | 2.37E-60 | ||
| CDD | 133 | 296 | 164 | 3.70938E-26 | – | |
| SMART | 162 | 298 | 137 | 1.8E-19 | ||
| Pfam | 167 | 296 | 130 | 4.7E-44 | ||
| ProSitePatterns | 268 | 287 | 20 | - | ||
| Gene3D | 298 | 413 | 116 | 1.7E-126 | – | |
| Pfam | 366 | 430 | 65 | 1.7E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi3g1v0175600.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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