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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0478700 |
| Transcript ID | LotjaGi3g1v0478700.1 |
| Related isoforms 5 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Katanin p60 ATPase-containing subunit, putative; TAIR: AT2G27600.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q9ZNT0|VPS4_ARATH Protein SUPPRESSOR OF K(+) TRANSPORT GROWTH DEFECT 1; TrEMBL-Plants: tr|T2HVY3|T2HVY3_CUCSA Vacuolar protein sorting-associated protein 4-like; Found in the gene: LotjaGi3g1v0478700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:89483159..89487848) extracted from Lotus japonicus Gifu genome v1.2.
TTAAATTTCCAAATCCCTTTATTTCCTAATTAAATCCTAAATAAAAATCCATTATCTCTCGAACAAGTTGAGAGCATTCA AAGTTTCAACTCTGTCTTGTTAGATTCCACACATTAACCTTCTCTGACTCCTTCCTTTACTTTTCCAATCAACAAACACC GATCACAATTAAATTTCCCCCAAAACGATGTCGTTGCAGCACCACCTCTAGGGTTTGCGATTCTCGATCATCATCATCAT CATCATCATCTGCAGGTAGCAGAATCCGAATCCGAATTCAAAGAAGAAGACGATGTATAGCAATTTCAAGGAGCAAGCGA TCGAGTACGTGAAGCAAGCGGTACACGAAGACAATGCTGGGAACTACGCAAAAGCCTTCCCTCTCTACATGAACGCCTTA GAGTACTTCAAAACGCATCTCAAATACGAGAAGAACCCTAAGATCAAAGAAGCCATCACGCAGCGTTTCACCGAGTATCT CCGCCGCGCCGAGGAGATCCGTGCTGTGCTTGATGATGGTGGCCCCGGCCCGGCTTCCAACGGGGACGCCGCTGTTGCTG CGCGGCCCAAGACGAAGCCTAAGGACGGCGGTGAAGGCGACGGCGGGGAGGATCCTGAGCAGGCTAAGCTTCGTGCTGGG CTGAATTCTGCTATCATCAGGGAGAAGCCGAATATCAAGTGGAATGATGTTGCGGGGTTGGAGAGCGCTAAACAGTCCTT GCAGGAGGCGGTTATCTTGCCTGTCAAGTTCCCTCAGTTCTTCACTGGTGGGTTTTCTTCTATGGTTGCAATGAAATGAA ATGATGGTTTATAGTTAACAATAATCATGGTTAGATTTATTAAACCGCCACGGCGTTTGAGGGCAATTGGGCATTTATTA CAGCTAATGAGTTGAACTAGTGATATTTGATTCTCGGCGTAGTTAGAATGTTAGATATTATCTGTGTTCATGATTTAGGG TGCTTTTGATTAAACAACTTAATTAAGCTTGTCATTAATCACTTAAGCTGTTATGCAAGTGTTTCGGTAAGTTGCTCATG AATAAGCGCCTATACGGCTATACCTATCTATAAGCTGTTTTAAGCTAATTTCAACAGACTTCTCAAATTAGCTTATGTGG TAAGCACTCAATTAAGTTGTTTACCCAAATGCAACTTTATTTCAAAAGGCCTTACTTACAAGCTTATTTAAGAAGCTAAT TGAAATAATAAGAACTTATATGTTGGTATAAGTGTTGAGAACGTGAAGGTTATCGAGATAAGCTTAAGAGTTTACAGGTT GGTTATAAACTAATTTTCATAAGCTAAATCAAACACTTGCTTGACTGCTTATGCTATAAGATAAACTAAGATATCATATA GTTCATTAATGGAATGCTTGAAGAGAATAAAATGATGGGTTAAAATGAAACTTAATGTTCTAATCTCTAGTTCTTTTTTA TCTACATTACACAGTTCTCTTAATTCAAAAATTAAAATTTATCTTTGCTTATCCCCTTTTCATCCAATACCTTCAAAGTT CAAACGTAGACTAATTGTTTAATATGGTTTGCCATTGTGTATTTCAGGTAAAAGACGACCTTGGAGAGCTTTTTTGTTGT ACGGACCACCTGGAACAGGTAAATCATACTTGGCCAAGGCCGTTGCAACAGAAGCTGATTCTACATTTTTCAGGTATATT TGTTTTGATATGTATAGTGTGTGTACTGATGTTAAGTTCATATTTGACTTTTCCACTTCTAAAGCAGCATTCACTAATGT GTATAGACTTTCTGGCCCTTATTTATGTTGTGGTTTGAGTTGCAAGCAGAAAAATTAAGAGGCTGATGAAATAAAAGTGT CAAAATGACTCATTTGATAATGTTAGTATGTTCTGAAAAAACTGTGTTCCTTTTGCTTTCAGTATCTAGGCAAAGTCTTA GGTGCCCAAGTTTTAATTCGTTTTTTATTTTGTATGCATGATAGTAATTTACTTTCATGTACACGTGGGCATGCAATTTT ATTGAGTTCTGCCTTGAAAATGATTTTATTGTGGAAAATGTCCTCTATATTTGACAATGATTTTGATGTGGGAAAGGTCT TCTATATTGTTATAATTATAATTAAGTCCATAGGTGAATATTTTCTTTGCAACATATGTTAACTTTTGAATTCTTCACCA GTGTTTCTTCATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAAATCTTTTTCAAATGGCCCGC GAAAGTGCACCTTCTATCATATTTGTTGATGAAATTGATTCTCTCTGTGGTCAGCGTGGAGAGGGCAATGAGAGTGAAGC TTCAAGACGAATTAAAACTGAACTTCTAGTGCAGATGCAGGTACAATTTGTGGTCTCATGGCGGGGATATGTTCATAGAA CAATAACTAGTTTTAGTTGATATTTGTATTGCATTATCCTGAGCAAGTCAAGAAGCCTGAGTCCCACTTTATGTAGCTGT AGTATATATGAATTATTCATGAAAATTTCTTTTGCCATAGTCAAATGTGATTAGTTTCATAAGTTCGTAGGTATTAACCA TTTTGGCAACACTTAACTACTTTCATTTTCAAAAGTAGGTTTCTTGGCTGTGCCTTTACATTTGACAGAAATGTTTTTGA AGTTTGAAGGACCCAGAGGTATTGGGTACATATCAATTCACATTGCGTGTTCCAGTCTTTTGGATGAAAAAAGACAAGCC AAGCTTTCTGATATATACTCGTAGTTTGTTAGTTATGTTGACGTAGTTAGTTAGAGGGTTTGAGAGGGAATATTTTTAAT AAGAGGCAGTTAGAGAGTATGGTAATCTTTTGGGGTGATTGTGGGAATTCTAGGGAGAGTGCTGGTTCTCTTGAACAACC AGTGACCATTGTAGTTCATTGCTATTCTTGAATAATAGTCGGTTCTTGTCCCTCATCTATCAATTGGTATCAGAGCACCA TCCCAGGGTTGTTATTGCCCGGTCTTTTGATTGTTTAAGCATTTGCAATTATTACCTTTTCTTTTGGTGTCCATAATTAT TACGTAGACTATTTTTTTATCATGTCAGATTTTTCAAAGTTAGTTGGTTGATGGTTTTTAGTCATCCAGAAAACTGCACA CGCATTTTGATTAGTAATTCTCTATTCAATTTTGTTATTCTAGAAGCAACCTGTCTTAATTCTTTTTTTTCTTTCTGAAG CTGAAAACAGATAACTGGTATTCATATATTTTTAAATTCTGTCTGTCCTTTCCCTCACCCACACAATAAATTCATCCACT TAATGCATGTTAATGTTGAAACATGTCTGCCACATTTTTATTATTTTCTTCACGGTAATTTATTATTATGCTCCAGCATT TTCCTAATTCATAAAAGTCAAGGTTCCCAACAGCTTTGGTGTCAGTCCTCTTTGTGCTTTTTGTATTTATGTCCAAGTCC AATCATAATGTAGTTTATCCACTTCACATTGTAGGGTGTAGGAAACAATGATCAGAAAGTTCTTGTTCTTGCAGCAACAA ATACACCTTATGCTCTCGATCAGGTAAGAAGAAAATAGTTCTGTTTGTTTGTTAATGTGTGATTCTGTTTTGATGAATGA ACTTGTAATTGCAGGCAATAAGGCGGCGCTTTGATAAGCGTATATACATTCCACTGCCAGATGTGAAGGCTCGCCAACAC ATGTTCAAGGCAAGGTCACGAGTCGTGATTATGTGTATTGAAGGATAGCACGTATTGGGTTATAATCTAGCAAATGATCT TACCATGTTTTTCTTGTGGGCTTGCTAAATTGAACAGGTGCATTTAGGAGATACTCCCCATAACTTGGCTGAAAGTGATT TTGAACACTTGGCTCGCAAGACAGAGGGATTTTCTGGTTCAGATATATCTGTCTGTGTAAGTTTGACTTCTATATGAAAT GCTTTATTGCAGTTCTCATGTTATATGGATGAGTTTGATGCTGAAGTTATTTGTACATCTTCTATAGGTGAAAGATGTTT TATTTGAACCTGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTAAGAGTCCTGAGGGTATGTGGATTCCATGCGGACCA AAGCAACAGGGTGCAATACAAATAACAATGCAAGACCTTGCTACAAAAGGTCTTGCTTCTCAGGTATTTAAGATGCTGTA GATTTTCATTACAGTGGAAAGTAGGACTTCTCAAAATGATAACTGGTATCTGAGAGTTTATATGTTATTGTTTTCTATCC AGATCCTTCCGCCACCTATATCAAGAACCGATTTTGACAAAGTACTTGCCAGACAAAGGCCTACAGTAAGCAAGTCTGAC CTTGAAGTCCACGAGAGATTCACAAAGGAGTTTGGAGAGGAAGGTTAATTGTGATGGGATTTGCATCGAAGATCCACTGT TTTAAACATAATGTTATGATCTGTAACTTACTGAGCTATTGGATCAAGTAAATGCACCTTTTTTATTTGTTATTAGGGAT GTGAATTCCCCTCCTGTACGAAAGTGAATTTATAGAAGTGGATACACTTATTTGCTTCTCCTAAATTGTGTATAAAAAAA TCTGAATTCATCAGAAAAATAAATTGTATGTGATACTGGTTTCTTATGTTCGCTCTGTATTTTGAACGCATGTTTCACAA ATTTAAAGTATTGAGTGCTTTTCCAATTCCAAAATGGATGAGAATTTCAG
CDS sequence (LotjaGi3g1v0478700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTATAGCAATTTCAAGGAGCAAGCGATCGAGTACGTGAAGCAAGCGGTACACGAAGACAATGCTGGGAACTACGCAAA AGCCTTCCCTCTCTACATGAACGCCTTAGAGTACTTCAAAACGCATCTCAAATACGAGAAGAACCCTAAGATCAAAGAAG CCATCACGCAGCGTTTCACCGAGTATCTCCGCCGCGCCGAGGAGATCCGTGCTGTGCTTGATGATGGTGGCCCCGGCCCG GCTTCCAACGGGGACGCCGCTGTTGCTGCGCGGCCCAAGACGAAGCCTAAGGACGGCGGTGAAGGCGACGGCGGGGAGGA TCCTGAGCAGGCTAAGCTTCGTGCTGGGCTGAATTCTGCTATCATCAGGGAGAAGCCGAATATCAAGTGGAATGATGTTG CGGGGTTGGAGAGCGCTAAACAGTCCTTGCAGGAGGCGGTTATCTTGCCTGTCAAGTTCCCTCAGTTCTTCACTGGTAAA AGACGACCTTGGAGAGCTTTTTTGTTGTACGGACCACCTGGAACAGGTAAATCATACTTGGCCAAGGCCGTTGCAACAGA AGCTGATTCTACATTTTTCAGTGTTTCTTCATCAGACCTGGTTTCAAAGTGGATGGGTGAAAGTGAAAAGCTGGTTTCAA ATCTTTTTCAAATGGCCCGCGAAAGTGCACCTTCTATCATATTTGTTGATGAAATTGATTCTCTCTGTGGTCAGCGTGGA GAGGGCAATGAGAGTGAAGCTTCAAGACGAATTAAAACTGAACTTCTAGTGCAGATGCAGGGTGTAGGAAACAATGATCA GAAAGTTCTTGTTCTTGCAGCAACAAATACACCTTATGCTCTCGATCAGGCAATAAGGCGGCGCTTTGATAAGCGTATAT ACATTCCACTGCCAGATGTGAAGGCTCGCCAACACATGTTCAAGGTGCATTTAGGAGATACTCCCCATAACTTGGCTGAA AGTGATTTTGAACACTTGGCTCGCAAGACAGAGGGATTTTCTGGTTCAGATATATCTGTCTGTGTGAAAGATGTTTTATT TGAACCTGTTCGCAAAACCCAAGATGCCATGTTTTTCTTTAAGAGTCCTGAGGGTATGTGGATTCCATGCGGACCAAAGC AACAGGGTGCAATACAAATAACAATGCAAGACCTTGCTACAAAAGGTCTTGCTTCTCAGATCCTTCCGCCACCTATATCA AGAACCGATTTTGACAAAGTACTTGCCAGACAAAGGCCTACAGTAAGCAAGTCTGACCTTGAAGTCCACGAGAGATTCAC AAAGGAGTTTGGAGAGGAAGGTTAA
Protein sequence (LotjaGi3g1v0478700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MYSNFKEQAIEYVKQAVHEDNAGNYAKAFPLYMNALEYFKTHLKYEKNPKIKEAITQRFTEYLRRAEEIRAVLDDGGPGP ASNGDAAVAARPKTKPKDGGEGDGGEDPEQAKLRAGLNSAIIREKPNIKWNDVAGLESAKQSLQEAVILPVKFPQFFTGK RRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSVSSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRG EGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDVKARQHMFKVHLGDTPHNLAE SDFEHLARKTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKSPEGMWIPCGPKQQGAIQITMQDLATKGLASQILPPPIS RTDFDKVLARQRPTVSKSDLEVHERFTKEFGEEG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 433 | 433 | 4.3E-280 | – | |
| PANTHER | 1 | 433 | 433 | 4.3E-280 | – | |
| SMART | 2 | 79 | 78 | 3.2E-24 | ||
| SUPERFAMILY | 2 | 81 | 80 | 1.7E-24 | ||
| CDD | 4 | 77 | 74 | 1.16427E-36 | – | |
| Gene3D | 6 | 75 | 70 | 2.3E-24 | – | |
| Pfam | 7 | 70 | 64 | 1.5E-20 | ||
| MobiDBLite | 73 | 110 | 38 | - | – | |
| MobiDBLite | 91 | 110 | 20 | - | – | |
| Gene3D | 126 | 422 | 297 | 1.4E-125 | – | |
| SUPERFAMILY | 126 | 430 | 305 | 8.27E-59 | ||
| CDD | 134 | 297 | 164 | 1.63754E-25 | – | |
| SMART | 163 | 299 | 137 | 2.6E-19 | ||
| Pfam | 168 | 297 | 130 | 1.2E-43 | ||
| ProSitePatterns | 269 | 288 | 20 | - | ||
| Gene3D | 299 | 414 | 116 | 1.4E-125 | – | |
| Pfam | 321 | 354 | 34 | 2.8E-6 | ||
| Pfam | 367 | 431 | 65 | 4.3E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. |
Expression pattern of LotjaGi3g1v0478700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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