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LotjaGi1g1v0464200.1

Overview

Field Value
Gene ID LotjaGi1g1v0464200
Transcript ID LotjaGi1g1v0464200.1
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Katanin p60 ATPase-containing subunit, putative; TAIR: AT2G45500.1 AAA-type ATPase family protein; Swiss-Prot: sp|Q6AZT2|SPAST_XENLA Spastin; TrEMBL-Plants: tr|V7B672|V7B672_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0464200
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:97044037..97050095) extracted from Lotus japonicus Gifu genome v1.2.

AAACGCAAAGGTTACATAAATGGGGAAAATCAAATACGTATTATTTTTATTTACTAAAACCAAAACCAAATCAATTAAGC TTCGAAATCAATTAATTCCAAATTATGAAAATCGCGTTTTGTTTTGAGAGGGATGAGTTTCTTCCAGGGAATCATTGATT CTTTCAATTCCATCTTCACTCCTGAACCTGATCACAATCACAATCTCAACCCTTCTTCTTCTTCTTCTTCTTCACCAATG GAAGCTTCTCCTTCTCCTTCTCCTTCTTCTTCGGTTTCCAACGAACGCGTCGCTTACAAGCTCAAAGGCTACTTCGATTT GGCCACGCAAGAGATCGACAAGGCCGTTCGAGCCGAAGAGTGGGGCTTGGTCGACGATGCTCTTCTTCACTACAGGAACG CACAGAAGATCCTCGTTGAAGCTAATTCTACTCCTGTTCCTTCTTTCATCACTTCCAGGTTTGCATAATTGAAAAAAAAA AGTTCCTTTATTTACTTGTTTTGTGTGATTTTTTGTGATGGGTTTTTGTCAAAAATGTTGGGTTTTTTATTGGGTTGATG AAGGATAATGAAAAATATGAACTTTCAAGGAAATGGTAATGTGGGGGTTTTTGCTTATTTGTTTCTTCAGAGTGATTTTA TGTATTGAAGGTGACAAAAGAGGTTAATGTGGTTTTCAAGTTTGCATTAAAATTTTGATACTTTTGTTATGGGCAAAAAA TTGAATTTTATCAATTGATTTTTCAGTAAGAATAAGGGGAGTTGAGATTTTGGAATTGCACCAAAATTTAGTGATTAGTC TCAAAGAGTTGTCATTAGCTTGGTACCAGCTTGGATGTAGTTAATGTACACTATGTTCTTAATCTTAATAGTTAAATCAT AATGGAGGGTCTTCATAAATTTACATCTTATTAATTGAATGTGTAGTGACTAGTGAGAGGAGGGGATTTTCGGATTTTTG GACACATTTTTATTTGCAGCATTTTTTTTAGATTCCAAATTGCATCAGAATTCAATGATTTAACCATAATGCGGGGTCTT TAGCTCTGTGGCAGCTCAAATGTAGTTGCCTAGTTGATCACTTCATTTACACCTTTATCTTAATATTTTGATTACAAAGG AGGGTTCTTATAATCTGATGTTTTTGTTGTTTGCTTACTGAAAGTTATGATTCTGTGACAGTGAAAAGCAGAAGGTGCAA TCGTATCGTCAAAAGATATCAAAATGGCAGGGCCAAGTTTCTGAGAGATTACAGACTCTCAGTAGACGAGCAGGTTTGTA TTTCTTGAAGCAGCTACATCTTTTTCTCTCCTAATTATGATTTTTCCAAGAGTGCTTATTGTTTTTTTCCTTATCTTCTA CTTCTTCATGTTCCCTTTTTACCATTGCAGGTAGCTCATCTGCCAATCAGGTACGGTATGATCTCTCTAAACTTTAAATA TGATACTTAATATAGTCAATCTTAAAGCAAAAGGCTGTGATTATTATGAACCTTCAAAATTTCTTTCACTCTCCCAACAA TATTTGCAGAGCACCTCAAACATTGCACCAACTGCTGCAGCTCCGGTGAAACGACCAAATACTACAAAAAATGTAGCACC AAAGTATCCCCAAAGAATAGGTCAAGTGAAAGTTGGAAGCCCCAATTCTAGTCAGGCACCTGGTGTAAATAGTGACACAA AACTCGTTGAAATGATTAACACTGCCATAGTAGATAGAAGTCCTTCTGTTAGATGGGAAGACGTTGGTAAGAATCCATGC ATATTTGCTTTTTTCTCTTTTTTATGTGTTATCAAATGTTTGATTCTTAGTATGAAAATGCAGCTGGACTTGAAAAGGCG AAGCAAGCTTTAATGGAGATGGTTATTTTGCCAACTAAGAGAAGAGACTTGTTCACTGGTCTTAGAAGGCCAGCTAGGGG TATATCCATGGAACCTTATTACATTTTTGTTATAAAATAGATAATGGTCAAAATTGTAAAGTAAAAATGCCAAAAATTAC GACTGCTGAACCTTTTTATTCTAGGTTTGCTTCTCTTTGGTCCGCCTGGTAATGGAAAGACAATGCTTGCCAAAGCGGTG GCTTCAGAATCAGAAGCAACATTTTTTAATGTCTCAGCAGCTTCCTTGACATCAAAATGGGTATGTCTCTATCCATGTAT CTTGTTTGTGTTGAGTCTCGTTCCATATCTTATGTGAACGTGTTTATGTATTTGATAAGACTTTCAAGTTTCACCATGGT TGACTTATGCTCAACAGGTGGGTGAAGGTGAAAAGCTTGTCCGGACACTATTCATGGTAGCTATATCCAGACAGCCATCT GTAATTTTCATTGATGAGGTATCCCCCTCATGTACTGAGTAGAGAAATTGTTGCTCCACTAATAAATATGACTAGAGAGA CTACCATAAAAGAAAATGTGTATGGAGAGTACAACTACCGTACCTTTGCTCTAGCAGCAATAGACCACTTAAGAATCTGT TCTTTGAGAACATTGTTCAGTAATTCTTTGGACGGCACTCTTGCATTTCACTGACTTTGTTTTATGCTTCATTCAGAGCG CAACTCCTAATTGATTTTCATTGGACTATATTTCTTAAGAGTGCAAATTTTGAAATGGTGTGACTAATGATCCCCTTTGA CAATAGTTGTCTAGGGTGTTTTTATCTTCTAATAAAAGTAGGTAAATGACATCAAATATTTAGGAAGATTGATGAATGAT GCTGCATGTAAGCTAGTCTGGTGTCATTTAAGTGTCAGAAAGATTATTTATTTTTCAAATGAGTCTATCTGAATTTGTAA CACTTTCTGCATGACAAGCATCATTTGACAAGCACTATCAATGATTGTCCAAAGTTCTAGTCCCTTGTGATGGCTGTGTA AAGTTATGCTATCTTGTGTGTAACATTTGAATTTTCTCTTTGTTGAAGCATAAGCAGAAAGAAAGGGTTCTGTGCTTCGT GTCTAAATTTTTGTCAACTTCAAATGATTTTAATTTCCTTTTTGACTGATAACAGATTGATAGTATAATGTCAACAAGGG TGGCAAATGAAAATGAGGCCAGCAGACGCTTAAAATCTGAATTCCTTATCCAGTTTGATGGGGTGACATCCAATCCTGAT GATATTGTGATTGTAATTGGTAAGCGTTATATCTTTAAATAATCATTCTCTTTCTATAAATGAGCATGATTTTGACTTAG ATGAAGATCCAATGTGCTGGTTATTGTCTTATTGGCTGAATAGAATGTAGGACTCCAGATTAGCTTATTTGTTATAGTTG CAGTTGCTGGTCTTGGTTTCCGTTTGGCAGATGAGTGAGATGACATTTAATGATTGAAGTTCAGTTCTATGGAATGTTCA ATGTTGAATTTTCTGAAAACTGCTTTATGAATGTAATCTCATTTTGTTTTCAAGCATGTGTAGTTCACAAGTGCAATCAT AATTGGTAGATAGGCTTTGGAATTTGTCAAAAAAGATTTGACTCCTTTAAAGTAAAGGGTGTGGTTTAGATTTAGAGGAG AAAGTGTGGAATTGTCGCCTTTGATTGAAAAATGAGTAAATTTTGACTACTTCATAGTTAGTTATACATGTGGATGTATT CCATCACAATCTCAACCATCATTTTCCAATAACGATTCTGATTCCATATTTTGACCTCTAAACTACACTCTTAACTTTAA AGGAGACAAATTCATTTCAGAAATACAGTTTATTTTCATCTTTTGGAATATCAAAGAACCATTGCGCATCGATTCTATTT TCCTCTCCCTGGTTGCCGTTGTGAACTGGCCTCCTAAGAATTATCTGGCTGTATATTTGATGGATGTAACATTGAATTTT GGCTTTCGTAGATTTGGAATTGCTTATTTAATTTTCTTTTACCTTCTCGGAATACAGGTGCGACCAATAAGCCACAAGAA ATTGATGATGCAGTTCTTAGGAGACTGGTAAGAATTTCTTCATTGTCCTATCCTGGATGTGTAGAAAATATATTATAATT CCAGAATTTCATGTAGCCGCCAAGTGGAGAATGTTTTTGTTAGAACTTAGAATTAAGGGACCATTTGTTTATTTAACAAA AAAACTAATTATAAGGTTGTGATACAATTTTGTTTTTAAGAATGACCTCATTATCAATAATATCCCTTCTAATCTGGTTT TTATCAAGCTCAATGGTAGTGTGATCCATGTAGCCGACCTCACTTAGTGGAATAAGGCTTTTGTTGTTGTTGTTGAAAAA AATTGTTTTTAAGAGATTTTATGAAGCTATCAATGAAAAGTTCAACCGTCCACTTTCTTAATTTATTAATGTGAATTTTT TCCTTTTTCTTAACCCATGTGTCATGTTTTGATTGTACAACAGTAAAACAGTATAAATGAAACCGCATCTAAGTTTTGTC CTTTTTTGAAATGTTGCATAAGAGAGACATGTAAGGCTGTGACACTTAACATGAACAAGCAAGACACTTTAAGTATGTTT TGTATAGTTGTCATTTGTTTCCCATTGAAATCTATGCATAATTATATATCATAGATAACAGTTATATGAGCTTGAACGCA GCTCTGCTACTTTACTAATTCTGTTCTTGGGTTCACTGTGAAATGTTTACTAGGTAAAGAGAATATACATACCTTTACCA GATGAAAATGTTCGGAGACGTATGCTAAAACACAAACTCAAGGGTCAAGCATACTCATTACCTAGTAAGCAATGCTCTCT CTTCTTTTTTTCATCCTGATACTTCTTCTTTTGATTTGTGTCTTTTATGGTGCTACCTGGAGTTTTCTGGTTAAGTGGTT ATATATTATTTTGGGTATTCTGTTTCTATGGTGGCTGGCTGGTACCTTCTCTGTTTATTCTGGATTCTGTTGGAAACTTT CTGCCACATTTGTGCAAGTTAGTTTAATTTGTTATTGATAGGCAAACAAAATACTTGAAATCGTATGCACCAAAGATGCA AAACTAAATATCAAGAGTTTGTGTTCTCTTTTGCATGCTTTTAACTTTGTTCTTTGACATCCTTCATAAAATAAAGCTCA AGAATTTATTATTGTATTATTACATTACTCACAGTGCTCTGTTTTTAACTAAAAGATTTTAATTTTTATGTTACAGGTAG AGATCTAGAGATGCTTGTAAAAGAGACAGAAGGTAACTATTTGACGCCAAATTACAGCTCGCTGCTAATTTTTGAGTCAT GATAAGAACAAATTAAAATGTTAAGATTTTCTTTAATTGTTAAAAATATAATATAAAATCATTCATGTGTTTTATTCAGC GCATGGTATTTGGGTCGGTGCATCGAGACCAATAGGCTCTTACATGAGAGGCGTGTTAGAAATATAATATTAAAATATTA TGTCTTCACCTAGCAGCTTAAGTTTTTGGAGTTGTCAGTTAATGATATTTTTAAATAAAAAAATATGATTATTACTATTT TTCTTTGTTTGCAGGATATTCAGGAAGTGATCTACAAGCCTTGTGTGAAGAAGCTGCAATGATGCCAATTAGAGAGCTAG GTGCTGACATTCTTAATGTGAAGGCAAATCAGGCATGCTAGTTTGAAATTGCTATGATTTTAGATATGGATTATTATTAA TCTTGTGAATGAAAATTTTCCTTTTTTGTGAAAGTTAACCATTTCAGTTTTACCAGGTAAGAGGACTGAGGTATGAGGAT TTCAAGAAAGCAATGTCTGTCATCAGACCAAGCTTAAACAAGAGTAAATGGGAAGAGCTTGAGCGTTGGAATGAGGAGTT TGGTTCCAATTGAAGTCTTATTCAAAACATGCTTTCATGCATCATGCATATACTTAAATTCAAAGAAAGTGTACATTAAG ATACTGAAGACAGATAAATTATACTAGAAATGACAAAAAAAATTGCAGAGGAATTTTTTTTACCTGTCAGTACATGTATT TTAGATTCTGAGACTGAAGTTAAACCTGTGTAATTGATTAATGGTTATAAACTTTTGTAGCTTCTCTTCAGAAATGAGTA TATTGCGCATAATTTATTATGACAAGTCTATCTTGTACCTCGTAACCATAAGCACTCAT
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0464200.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAGTTTCTTCCAGGGAATCATTGATTCTTTCAATTCCATCTTCACTCCTGAACCTGATCACAATCACAATCTCAACCC TTCTTCTTCTTCTTCTTCTTCACCAATGGAAGCTTCTCCTTCTCCTTCTCCTTCTTCTTCGGTTTCCAACGAACGCGTCG CTTACAAGCTCAAAGGCTACTTCGATTTGGCCACGCAAGAGATCGACAAGGCCGTTCGAGCCGAAGAGTGGGGCTTGGTC GACGATGCTCTTCTTCACTACAGGAACGCACAGAAGATCCTCGTTGAAGCTAATTCTACTCCTGTTCCTTCTTTCATCAC TTCCAGTGAAAAGCAGAAGGTGCAATCGTATCGTCAAAAGATATCAAAATGGCAGGGCCAAGTTTCTGAGAGATTACAGA CTCTCAGTAGACGAGCAGGTAGCTCATCTGCCAATCAGAGCACCTCAAACATTGCACCAACTGCTGCAGCTCCGGTGAAA CGACCAAATACTACAAAAAATGTAGCACCAAAGTATCCCCAAAGAATAGGTCAAGTGAAAGTTGGAAGCCCCAATTCTAG TCAGGCACCTGGTGTAAATAGTGACACAAAACTCGTTGAAATGATTAACACTGCCATAGTAGATAGAAGTCCTTCTGTTA GATGGGAAGACGTTGCTGGACTTGAAAAGGCGAAGCAAGCTTTAATGGAGATGGTTATTTTGCCAACTAAGAGAAGAGAC TTGTTCACTGGTCTTAGAAGGCCAGCTAGGGGTTTGCTTCTCTTTGGTCCGCCTGGTAATGGAAAGACAATGCTTGCCAA AGCGGTGGCTTCAGAATCAGAAGCAACATTTTTTAATGTCTCAGCAGCTTCCTTGACATCAAAATGGGTGGGTGAAGGTG AAAAGCTTGTCCGGACACTATTCATGGTAGCTATATCCAGACAGCCATCTGTAATTTTCATTGATGAGATTGATAGTATA ATGTCAACAAGGGTGGCAAATGAAAATGAGGCCAGCAGACGCTTAAAATCTGAATTCCTTATCCAGTTTGATGGGGTGAC ATCCAATCCTGATGATATTGTGATTGTAATTGGTGCGACCAATAAGCCACAAGAAATTGATGATGCAGTTCTTAGGAGAC TGGTAAAGAGAATATACATACCTTTACCAGATGAAAATGTTCGGAGACGTATGCTAAAACACAAACTCAAGGGTCAAGCA TACTCATTACCTAGTAGAGATCTAGAGATGCTTGTAAAAGAGACAGAAGGATATTCAGGAAGTGATCTACAAGCCTTGTG TGAAGAAGCTGCAATGATGCCAATTAGAGAGCTAGGTGCTGACATTCTTAATGTGAAGGCAAATCAGGTAAGAGGACTGA GGTATGAGGATTTCAAGAAAGCAATGTCTGTCATCAGACCAAGCTTAAACAAGAGTAAATGGGAAGAGCTTGAGCGTTGG AATGAGGAGTTTGGTTCCAATTGA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0464200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSFFQGIIDSFNSIFTPEPDHNHNLNPSSSSSSSPMEASPSPSPSSSVSNERVAYKLKGYFDLATQEIDKAVRAEEWGLV DDALLHYRNAQKILVEANSTPVPSFITSSEKQKVQSYRQKISKWQGQVSERLQTLSRRAGSSSANQSTSNIAPTAAAPVK RPNTTKNVAPKYPQRIGQVKVGSPNSSQAPGVNSDTKLVEMINTAIVDRSPSVRWEDVAGLEKAKQALMEMVILPTKRRD LFTGLRRPARGLLLFGPPGNGKTMLAKAVASESEATFFNVSAASLTSKWVGEGEKLVRTLFMVAISRQPSVIFIDEIDSI MSTRVANENEASRRLKSEFLIQFDGVTSNPDDIVIVIGATNKPQEIDDAVLRRLVKRIYIPLPDENVRRRMLKHKLKGQA YSLPSRDLEMLVKETEGYSGSDLQALCEEAAMMPIRELGADILNVKANQVRGLRYEDFKKAMSVIRPSLNKSKWEELERW NEEFGSN
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
MobiDBLite
mobidb-lite
18 49 32 - –
PANTHER
PTHR23074:SF86
56 486 431 1.6E-181 –
PANTHER
PTHR23074
56 486 431 1.6E-181 –
SMART
SM00745
57 134 78 8.2E-17
IPR007330
CDD
cd02679
57 135 79 1.01818E-27 –
MobiDBLite
mobidb-lite
134 154 21 - –
MobiDBLite
mobidb-lite
134 169 36 - –
Gene3D
G3DSA:3.40.50.300
210 482 273 1.2E-111 –
SUPERFAMILY
SSF52540
211 484 274 4.46E-59
IPR027417
CDD
cd00009
237 382 146 2.18042E-24 –
SMART
SM00382
248 384 137 2.6E-15
IPR003593
Pfam
PF00004
252 382 131 2.2E-38
IPR003959
ProSitePatterns
PS00674
354 373 20 -
IPR003960
Gene3D
G3DSA:1.10.8.60
383 465 83 1.2E-111 –
Pfam
PF17862
407 437 31 3.8E-11
IPR041569

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0464200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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