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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR008803
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 15 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.614s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0104159.1
n.a. PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Glycine max] gi|356555849|ref|XP_003546242.1| chr0 44516597 44519919 +
2 domain predictions
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Lj3g3v0488310.1
n.a. PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Glycine max] gi|356532989|ref|XP_003535051.1| chr3 5710355 5711158 +
2 domain predictions
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Lj3g3v0948660.1
n.a. PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Cicer arietinum] gi|502080043|ref|XP_004486443.1| chr3 11773945 11774313 +
2 domain predictions
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Lj3g3v0965540.1
n.a. PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Glycine max] gi|356555849|ref|XP_003546242.1| chr3 12660514 12663861 -
2 domain predictions
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Lj3g3v2693010.1
n.a. PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 1-like [Glycine max] gi|356522460|ref|XP_003529864.1| chr3 32808404 32818792 -
3 domain predictions
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Lj3g3v2693010.2
n.a. PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 1-like [Glycine max] gi|356522460|ref|XP_003529864.1| chr3 32808404 32818792 -
3 domain predictions
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Lj6g3v1690540.1
n.a. PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Glycine max] gi|356555849|ref|XP_003546242.1| chr6 18722912 18727174 -
2 domain predictions
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Lj6g3v1690540.2
n.a. PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Glycine max] gi|356555849|ref|XP_003546242.1| chr6 18722912 18726991 -
2 domain predictions
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LotjaGi2g1v0084900_LC.1
n.a. Protein ROOT HAIR DEFECTIVE 3 homolog; TAIR: AT5G45160.1 Root hair defective 3 GTP-binding protein (RHD3); Swiss-Prot: sp|Q9FKE9|RHD32_ARATH Protein ROOT HAIR DEFECTIVE 3 homolog 2; TrEMBL-Plants: tr|I1MG11|I1MG11_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0084900_LC LjG1.1_chr2 24183019 24183449 +
2 domain predictions
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LotjaGi2g1v0148200_LC.2
n.a. Protein ROOT HAIR DEFECTIVE 3 homolog; TAIR: AT5G45160.1 Root hair defective 3 GTP-binding protein (RHD3); Swiss-Prot: sp|Q9FKE9|RHD32_ARATH Protein ROOT HAIR DEFECTIVE 3 homolog 2; TrEMBL-Plants: tr|A0A0B2NTE0|A0A0B2NTE0_GLYSO Squamosa promoter-binding-like protein 12; Found in the gene: LotjaGi2g1v0148200_LC LjG1.1_chr2 53212011 53215365 -
2 domain predictions
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LotjaGi3g1v0025900.1
n.a. Protein ROOT HAIR DEFECTIVE 3 homolog; TAIR: AT1G72960.1 Root hair defective 3 GTP-binding protein (RHD3); Swiss-Prot: sp|Q9SSN0|RHD31_ARATH Protein ROOT HAIR DEFECTIVE 3 homolog 1; TrEMBL-Plants: tr|I1KGC2|I1KGC2_SOYBN Protein ROOT HAIR DEFECTIVE 3 homolog; Found in the gene: LotjaGi3g1v0025900 LjG1.1_chr3 2808056 2819269 +
3 domain predictions
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LotjaGi3g1v0425400.1
n.a. Protein ROOT HAIR DEFECTIVE 3 homolog; TAIR: AT1G72960.1 Root hair defective 3 GTP-binding protein (RHD3); Swiss-Prot: sp|Q9SSN0|RHD31_ARATH Protein ROOT HAIR DEFECTIVE 3 homolog 1; TrEMBL-Plants: tr|I1KGC2|I1KGC2_SOYBN Protein ROOT HAIR DEFECTIVE 3 homolog; Found in the gene: LotjaGi3g1v0425400 LjG1.1_chr3 83473131 83483318 -
3 domain predictions
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LotjaGi3g1v0425400.2
n.a. Protein ROOT HAIR DEFECTIVE 3 homolog; TAIR: AT1G72960.1 Root hair defective 3 GTP-binding protein (RHD3); Swiss-Prot: sp|Q9SSN0|RHD31_ARATH Protein ROOT HAIR DEFECTIVE 3 homolog 1; TrEMBL-Plants: tr|A0A0B2S3W0|A0A0B2S3W0_GLYSO Protein ROOT HAIR DEFECTIVE 3 like 1; Found in the gene: LotjaGi3g1v0425400 LjG1.1_chr3 83474422 83482443 -
3 domain predictions
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LotjaGi6g1v0274800.1
n.a. Protein ROOT HAIR DEFECTIVE 3 homolog; TAIR: AT5G45160.1 Root hair defective 3 GTP-binding protein (RHD3); Swiss-Prot: sp|Q9FKE9|RHD32_ARATH Protein ROOT HAIR DEFECTIVE 3 homolog 2; TrEMBL-Plants: tr|I1MG10|I1MG10_SOYBN Protein ROOT HAIR DEFECTIVE 3 homolog; Found in the gene: LotjaGi6g1v0274800 LjG1.1_chr6 59160555 59169220 -
3 domain predictions
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LotjaGi6g1v0274800.2
n.a. Protein ROOT HAIR DEFECTIVE 3 homolog; TAIR: AT5G45160.1 Root hair defective 3 GTP-binding protein (RHD3); Swiss-Prot: sp|Q9FKE9|RHD32_ARATH Protein ROOT HAIR DEFECTIVE 3 homolog 2; TrEMBL-Plants: tr|I1MG10|I1MG10_SOYBN Protein ROOT HAIR DEFECTIVE 3 homolog; Found in the gene: LotjaGi6g1v0274800 LjG1.1_chr6 59160851 59169090 -
2 domain predictions
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