Domain Predictions — View

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PF05879

Source: Pfam

Description

Root hair defective 3 GTP-binding protein (RHD3)

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 15

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0104159.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Glycine max] gi\|356555849\|ref\|XP_003546242.1\|	Domains CYTOPLASMIC_DOMAIN IPR008803 NON_CYTOPLASMIC_DOMAIN PF05879 PTHR11649 PTHR11649:SF65 TMhelix TRANSMEMBRANE mobidb-lite	9
Lj3g3v0488310.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Glycine max] gi\|356532989\|ref\|XP_003535051.1\|	Domains IPR008803 PF05879 PTHR11649 PTHR11649:SF62	4
Lj3g3v0948660.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Cicer arietinum] gi\|502080043\|ref\|XP_004486443.1\|	Domains IPR008803 PF05879 PTHR11649 PTHR11649:SF65	4
Lj3g3v0965540.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Glycine max] gi\|356555849\|ref\|XP_003546242.1\|	Domains IPR008803 PF05879 PTHR11649 PTHR11649:SF62	4
Lj3g3v2693010.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 1-like [Glycine max] gi\|356522460\|ref\|XP_003529864.1\|	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:3.40.50.300 IPR008803 IPR027417 IPR030386 MF_03109 NON_CYTOPLASMIC_DOMAIN PF05879 PS51715 PTHR11649 PTHR11649:SF62 SSF52540 TMhelix TRANSMEMBRANE cd01851 mobidb-lite	17
Lj3g3v2693010.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 1-like [Glycine max] gi\|356522460\|ref\|XP_003529864.1\|	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:3.40.50.300 IPR008803 IPR027417 IPR030386 MF_03109 NON_CYTOPLASMIC_DOMAIN PF05879 PS51715 PTHR11649 PTHR11649:SF62 SSF52540 TMhelix TRANSMEMBRANE cd01851 mobidb-lite	17
Lj6g3v1690540.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Glycine max] gi\|356555849\|ref\|XP_003546242.1\|	Domains CYTOPLASMIC_DOMAIN G3DSA:3.40.50.300 IPR008803 IPR027417 IPR030386 NON_CYTOPLASMIC_DOMAIN PF05879 PS51715 PTHR11649 PTHR11649:SF62 SSF52540 TMhelix TRANSMEMBRANE	13
Lj6g3v1690540.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 2-like [Glycine max] gi\|356555849\|ref\|XP_003546242.1\|	Domains Coil G3DSA:3.40.50.300 IPR008803 IPR027417 IPR030386 PF05879 PS51715 PTHR11649 PTHR11649:SF62 SSF52540 cd01851	11
LotjaGi2g1v0084900_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein ROOT HAIR DEFECTIVE 3 homolog; TAIR: AT5G45160.1 Root hair defective 3 GTP-binding protein (RHD3); Swiss-Prot: sp\|Q9FKE9\|RHD32_ARATH Protein ROOT HAIR DEFECTIVE 3 homolog 2; TrEMBL-Plants: tr\|I1MG11\|I1MG11_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0084900_LC	Domains IPR008803 PF05879 PTHR45923 PTHR45923:SF11	4
LotjaGi2g1v0148200_LC.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein ROOT HAIR DEFECTIVE 3 homolog; TAIR: AT5G45160.1 Root hair defective 3 GTP-binding protein (RHD3); Swiss-Prot: sp\|Q9FKE9\|RHD32_ARATH Protein ROOT HAIR DEFECTIVE 3 homolog 2; TrEMBL-Plants: tr\|A0A0B2NTE0\|A0A0B2NTE0_GLYSO Squamosa promoter-binding-like protein 12; Found in the gene: LotjaGi2g1v0148200_LC	Domains IPR008803 PF05879 PTHR31251 PTHR31251:SF101 mobidb-lite	5
LotjaGi3g1v0025900.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein ROOT HAIR DEFECTIVE 3 homolog; TAIR: AT1G72960.1 Root hair defective 3 GTP-binding protein (RHD3); Swiss-Prot: sp\|Q9SSN0\|RHD31_ARATH Protein ROOT HAIR DEFECTIVE 3 homolog 1; TrEMBL-Plants: tr\|I1KGC2\|I1KGC2_SOYBN Protein ROOT HAIR DEFECTIVE 3 homolog; Found in the gene: LotjaGi3g1v0025900	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:3.40.50.300 IPR008803 IPR027417 IPR030386 MF_03109 NON_CYTOPLASMIC_DOMAIN PF05879 PS51715 PTHR45923 PTHR45923:SF5 SSF52540 TRANSMEMBRANE cd01851 mobidb-lite	16
LotjaGi3g1v0425400.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein ROOT HAIR DEFECTIVE 3 homolog; TAIR: AT1G72960.1 Root hair defective 3 GTP-binding protein (RHD3); Swiss-Prot: sp\|Q9SSN0\|RHD31_ARATH Protein ROOT HAIR DEFECTIVE 3 homolog 1; TrEMBL-Plants: tr\|I1KGC2\|I1KGC2_SOYBN Protein ROOT HAIR DEFECTIVE 3 homolog; Found in the gene: LotjaGi3g1v0425400	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:3.40.50.300 IPR008803 IPR027417 IPR030386 MF_03109 NON_CYTOPLASMIC_DOMAIN PF05879 PS51715 PTHR45923 PTHR45923:SF5 SSF52540 TMhelix TRANSMEMBRANE cd01851 mobidb-lite	17
LotjaGi3g1v0425400.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein ROOT HAIR DEFECTIVE 3 homolog; TAIR: AT1G72960.1 Root hair defective 3 GTP-binding protein (RHD3); Swiss-Prot: sp\|Q9SSN0\|RHD31_ARATH Protein ROOT HAIR DEFECTIVE 3 homolog 1; TrEMBL-Plants: tr\|A0A0B2S3W0\|A0A0B2S3W0_GLYSO Protein ROOT HAIR DEFECTIVE 3 like 1; Found in the gene: LotjaGi3g1v0425400	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:3.40.50.300 IPR008803 IPR027417 IPR030386 MF_03109 NON_CYTOPLASMIC_DOMAIN PF05879 PS51715 PTHR45923 PTHR45923:SF5 SSF52540 TMhelix TRANSMEMBRANE cd01851 mobidb-lite	17
LotjaGi6g1v0274800.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein ROOT HAIR DEFECTIVE 3 homolog; TAIR: AT5G45160.1 Root hair defective 3 GTP-binding protein (RHD3); Swiss-Prot: sp\|Q9FKE9\|RHD32_ARATH Protein ROOT HAIR DEFECTIVE 3 homolog 2; TrEMBL-Plants: tr\|I1MG10\|I1MG10_SOYBN Protein ROOT HAIR DEFECTIVE 3 homolog; Found in the gene: LotjaGi6g1v0274800	Domains CYTOPLASMIC_DOMAIN Coil G3DSA:3.40.50.300 IPR008803 IPR027417 IPR030386 MF_03109 NON_CYTOPLASMIC_DOMAIN PF05879 PS51715 PTHR45923 PTHR45923:SF11 SSF52540 TMhelix TRANSMEMBRANE cd01851 mobidb-lite	17
LotjaGi6g1v0274800.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Protein ROOT HAIR DEFECTIVE 3 homolog; TAIR: AT5G45160.1 Root hair defective 3 GTP-binding protein (RHD3); Swiss-Prot: sp\|Q9FKE9\|RHD32_ARATH Protein ROOT HAIR DEFECTIVE 3 homolog 2; TrEMBL-Plants: tr\|I1MG10\|I1MG10_SOYBN Protein ROOT HAIR DEFECTIVE 3 homolog; Found in the gene: LotjaGi6g1v0274800	Domains CYTOPLASMIC_DOMAIN Coil IPR008803 IPR027417 IPR030386 NON_CYTOPLASMIC_DOMAIN PF05879 PS51715 PTHR45923 PTHR45923:SF11 SSF52540 TMhelix TRANSMEMBRANE mobidb-lite	14

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	6.67