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| Field | Value |
|---|---|
| Gene ID | Lj3g3v2693010 |
| Transcript ID | Lj3g3v2693010.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: protein ROOT HAIR DEFECTIVE 3 homolog 1-like [Glycine max] gi|356522460|ref|XP_003529864.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 679 | 679 | – | – | |
| PANTHER | 1 | 658 | 658 | 0 | – | |
| PANTHER | 1 | 658 | 658 | 0 | – | |
| Hamap | 9 | 765 | 757 | 19.393 | ||
| SUPERFAMILY | 10 | 249 | 240 | 2.15E-32 | ||
| Gene3D | 10 | 245 | 236 | 5.00E-35 | ||
| CDD | 36 | 242 | 207 | 5.98E-57 | – | |
| ProSiteProfiles | 37 | 252 | 216 | 70.878 | ||
| Pfam | 46 | 779 | 734 | 9.50E-298 | ||
| Coils | 218 | 238 | 21 | – | – | |
| Phobius | 680 | 699 | 20 | – | – | |
| Phobius | 700 | 705 | 6 | – | – | |
| TMHMM | 701 | 723 | 23 | – | – | |
| Phobius | 706 | 723 | 18 | – | – | |
| Phobius | 724 | 734 | 11 | – | – | |
| Phobius | 735 | 754 | 20 | – | – | |
| Phobius | 755 | 811 | 57 | – | – | |
| MobiDBLite | 762 | 811 | 50 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | GTP binding | Interacting selectively and non-covalently with GTP, guanosine triphosphate. |
Expression pattern of Lj3g3v2693010.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v2693010.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.