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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0296000 |
| Transcript ID | LotjaGi2g1v0296000.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CobW-domain-containing protein; TAIR: AT1G26520.1 Cobalamin biosynthesis CobW-like protein; Swiss-Prot: sp|Q99MB4|CBWD1_RAT COBW domain-containing protein 1; TrEMBL-Plants: tr|I3S5R3|I3S5R3_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0296000 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77079469..77085436) extracted from Lotus japonicus Gifu genome v1.2.
ATAGACACATTTTATAATCATGGTATGAATGAGAACCGAAAACTTGTTGGAAATAGAAGAACAAGTGCGAAACAGAAACA CAAGAAAGAAAACCAAGCAGTCGAAGATGGAGCACGACGAAGATGAAGAAGCACCTCTTGCTGTTCAGATTCAAGGGCTT GATGAATCCGTTTCTCAACAATCTTCTGTTGGGGTCACCCTCATCACCGGCTATCTTGGTGCTGGCAAGTCTACTGTAAG CTTTCCATTTCTCTGCTCTCTTTTCCAAACACCCCATTTGTTCTTATGCACATGATTGACTCACAGGTTGTCATTTATCT AAATTTTAGGCAATTGGGTGGTATAAAGTCATGTCCTTTTCACTTGTTGTTGCTTGTTGACATTGGTTTTTGGAATGATG GTGTTTGAATGATTTGTGATGTGGAATTGTGATTTTCAGTTAGTGAATCATATTTTGAATTCGCAACATGGAAAGAGGAT TGCTGTCATCCTGAATGAGTTTGGTGAGGAGATTGGCGTGGAAAGAGCTATGATTAATGAAGGGGATGGCGGTGCAATGG TTGAAGAGTGGGTTGAGCTTGCCAATGGGTGTATATGTTGCACGGTCAAACATAGTCTAGTTCAAGCACTTGAGCAGCTT GTACAGAGGAAGGAAAGGTAAAACACTTAGACACTTCAACCTTGTGGTAAAACAAGCATACACTTCAAACAAGCAAATAC TTCAAATAAGCAATGTCATGGAAAATTCAAGTGATTGAATGATAAATGACCCTTACATATTGTTGTTGTTCACTTTCATC AAACCCTGTTTTCAATTTATCATGAATTGATGTAGTATTCAGCAACGTGAGTCAGCTTTGCTATATATTTTGGCGCAATT AAGCAGTTTTTGTGTCTTTAGGCTTGACCATATATTGCTGGAAACTACTGGATTGGCAAATCCAGCACCTTTGGCTTCTG TTCTTTGGTTGGATGAACAATTAGAGTCAGACGTGAAGTTAGATTCTATCGTCACTGTAAGTATCTTTGGTGGATGAAAT TCATTTAGTTTTCTCATTTTTTTGGGCCTTGAATATTGCTATAATTTTCTATATACATAAAAGTAAACAAAATCTTATCC CACTAAGTGAGGTCGTTTGTATGAATCACATGATCTATATTAAAGACATGGCCAGTTTTATGTTGGCTGCTGGCCTAACA CAACCTTCCTTCTTTATCCGGGCTTCGGACCAGCTATGACACAACATAGGGAGAGTTTTATTTAGAATTTCCTCTATATT GTTTTTAAATTAATTCTCTAGAATTTTCTGTATAATAAAAATACAGTTGCTTATAGTAGTTTTATTCTCTGTCAAACAAA TTCTAATTTTTTTAGGTTTTATCCCTAGAAAATTGTCATTCTTTTGTGTCCAAGTTGGAAACATAGTATAGCACTTCTCT TGGCTTCTTAACTAGTATAGCACTATCATGTTTACCTTCGTGGCTCAGTGTCGACTTATATGTTCATAGGAGCTGTTTCT TTCCTTGGTATGTAAGAGAATGGCTTGTGAACCATGGTCTCTTTTTAATTGAGTTTCTGCTCATGTAGGTGGTGGATGCC AAGAATGTTCGCCTCCAGATTGATCAGCATCGTCGCTCATCTTCATATCCAGAAGCATATTTTCAAATTGCATTTGCGGT AATTGATTATAGTATTAACTGGAATTTGGTCATCAATAACATATTTCTCCTTTTATCATTTAGTAATTGGCAGCATTTTT ATTTGATGGAAAGGGGGGAAAAGAGATAGAGAGGGAACACAAAAAATTATTTCACTAACCAGACTAAGTAATTGTTATAT GTAAAACTGACCATACCCTTATTTATGCTAATAACTTGGATCATGTTAAGCATAGGGTACCATAATATAAGAGCAATAAT ATTTTCTCTTAATGATAATTTGACAAACGGAAGAGCTAATAATTTTGCTGCTTGTTTCAGGACATTATAATTCTTAACAA GGTTGATTTGGTATCTGCAGAGGGCTCTGGAGCTCTGAAGGAACTTGAGGAGGAAATCCATAACATTAACTCCCTTGTGG AGATAATTCATTCTGTCAAATGTCAAGTTGACTTGTCTAAGATATTGAACCGCCATGCATATGATACTGCAGTTAATATA TATTTTTGTTCATTCGCAGCTTTTCTCCCACCTTCTTATGGCTACTATTTAACTTCGCCGCCTCTATTTTCAGCGTGCCC CACATTTGGAGACATTGTTGGAAGAAAGTTGTTCTTTGTCTACTAAAAAGCTTCATGATAGTGGTGTGAGAACTATATGC ATTTCTGAGCAAAAGACTATTGATATTGATAAGGTAGATTTTCAAATTTATTCATTATGTTATTGTAGATTACATTATGA TTATATGTTAACCAATTGAAAGTTTTCCATTTTTATATAGCTTCTAAGCAAGAATGACCATCTTACAATTAACTGTGGCA TCATAAGTTTAGTATAGGGAGGGAAAGATAATAAACTAATTAAAACAACGTTTCTCTCTTTATTTCCCTGCCTCAGGCAT AAATTGTCCAGCTAATGTGTTTATGTTCGTTCTGTTCAAAATTCAATGTTTTGAATCATCCTTTCCTCTGTCTCATCTTG TATTGACATATTATTTAAACCTTGATAGACTCGTATATGGCTTGAGGAGATTCTTTGGGAGAAGAAATATGATATGGATG TCTACCGTTGCAAAGGAGTGCTGAGTGTTCAAAATTCTGATCAACTGCATACTTTACAGGTAAATTATAATTAACACAGT TAAGATTTTCGCAGAAGCTAATAAGCTATCTTATGCTATTACAATGTGAAAGTAAGATTGCTCTTTACATGTTCTGTATC TAAGTAGTTTTAGGGTCCATATTCGCCAGTGGTTGGGCATCTAAAATTTTGTATATTTTATAATTAAGTATAAATTTTCA TTAGCTCCACTATTACTGTTTGAATTGATATTTAGCGTATAATAAGACACTACTATGCTTTATATGAGCTTGGCAAGTAA GCTGTGTCACATTACCACCTACCAAGCTATGATAGTGTCTACCTTCGTTCCATATATTGTAGATTCTGCAGCAATTAAGC ATTTTTTGTTCAGGTACTGAGGCATGTTGATTTTAATTGGGTATTTTATAAGACAAATTTCCATGCTAAATTTACAACTC CTTGATTTACATATTTGAGTAAAAAAAAAATCCTCATCCCTAACTAATAGAAAAGAAATATATGCTATAAGAAAAAAAAA GTATAAATTGCATTTATATTCTATATTCTCTAATGGTATCAGGCAACCCTAGATTTTGAAACTTCTTATCCTCATATGAT AAAAGGGTTATTTTTTTATCAGCCACATCTATTTTTGATATTTGATAAATTTCATAATTTTAAGCATGAGATGCTTGTAA GTGATATTGGCTTTGTTTATTATTGGTGTTGTGTGTGTAGATAGGAATTGACTCCTTTAAGACGAGGGAAGACTGAGTTA TAGCCATTAATTAGAAAATCAACGTTTAAGATTGTGATCAAACTCATGCACATGTAAAACAAACTACAAAGTTATCTGAA CGATTGGTTTTTAAATCATTGGCTATAACATCTCTTCACTCTCAAGTAAATCCCTCACAAGTCATAAAAGGTGTATCAAG TGAGAGTGTGGGATAATAGAAAAAACTAATCTTGACCATACAGTGATGATTAATGTTGATTGTTACTTGAAACCTTTCAC GTAGGATAAAGAGTAAATGGTTATTTTGCCCTTTCGAAGACAGGGAATTGTTCCCTTGAATGATGGACCCTTGGTTCCTG AAAGATTACTACATGTGTGTTTGTATTTGCGATTAAGTTAGCCAGAAACACATTCAGTCCAATGACACAAGAGACATGGA TAAGCCGAAAGCACATTCAAACTGCTTTGGAATTGTGCTGATAGAAATACAAACACAATCAGTCAAATTGATCCTTATGT TAACAAGTGCCAATTATTTATCAGCCATGCACATGTGCTCATTAATTTTCATGCAGTATGCGCATCTGTTTAGACTTTTT ATCTTCTTTCATATCTATACGAAATCATTTTGCAATGGTGAAAGAAGACAATTCTCTTATATACTCTGTGTGTGTCTGGT GGGTATTATTGTTATTCATTTATTTTTCTGAAAATGTGCAGGCGGTGAGGGAACTATATGAGATTGTTCCAGCCCGCAAG TGGGAAAGAGAAGAAAACCGAATGAATAAGATAGTTTTTATTGGTAATCAGATGAACTTTGTTCCAGTCTAAGCACAACT TTAAATAGTGAAAACTGAAAAGACCTTGTTCAGCTTGCTAACATGTTTGTTTTTGATTGACAGGTCATAATCTGAAAGAA GATGTTCTAATTCATTCATTCAGAGCTTGTGTAACCTGTTAAGCTGTGCTTGTTCTCTGGTAACTGCTGGGTAAGCAATG CTTTTTGATTGGGATTATGAGATTCAACTATATCAACAAGCTTAAATAACATTGTGTTAAGTGTTAACCCTTTTAGTCCT CTCATGAGTCTGGCCCGGTAGCCTTGGATTACCAATTTTTGGATTAAAATATATATTCTGGAGAAAAGATGAAAAGGAAG CTGCTTTGGCAGGTATCAGAAATAGAAAATAGATTATTGCTTAACCTTCTATGTCAGAAGTGATTATGTAAAAGCTTTCT AAACTAAGAAACAATTCGAATCTCTATCGTTATAGATAAATTTTGACTAGAGTAGGACACTGACAATGTATTTGATTTGG TGAAAAGCCACAAAATAGGTGAAATGTGACTTTATGATAGGGTGGCACAGAAAGATTGCCCCCATTTCGCCCAACATGTG TACCTATATTCATTCAATAATGATTCTTAGACCACTTTAAGGTGCATCGAACTTGCAAAATCCTTCTTTTCTCTCTATCT CTCTCTTTTGTCACATTGTATCTAGGGATGGAATACGGCATGTCAAGGTGTCGTGGGCTCGTGGCTCTCTCTTTTTGTCA CATTGTATCTAGGGATGGAAATAGGTCGTACGACATGCCAAGGTGTCGTCGTGGCCTGACCCGTCAAATGCATGGTGTGA TCTAGTCCATTTATTAAAAGGGCTAGGCTTCCTGATTAGCTAAAAAGGTTGTCCCTCGACTATAGTGATATGTAGAAAGG CTTATTAGCCCGCTCACATATTGATCTCTTTAAGATGGTGTTTTGTCTATTTTCTTTAAATAGGCTCGTAGGTTATACTA TTTAAAAGGTCATGATAGACCTTCAAATTTGGCATATTTCATACCACATGCTAGACTTGAGCTGCGAAATTAGAATTCAG GTCGGGCTTGAGCCATGCAAACCCTGATTTGGCCTGGCCTACTACAACTCATAATCATACGATATATCACATCTATCACT TCTCTTTTTTTTCAAATCTCTTTTCAGTGGTTTTTTTTGTTACAGGATAAGTGGTTTATTCTCATTGGGTGCACATCAAC TTTATTGTATTTTATTTAGTGGCCTAGCCGTTCATTCCGCTGACATCATGTGCATTAATATTAATGTCACTTTCAATTCT CTATCGTTACCGACTCGGTGTCTATGTCAATTTTCAAAAGGATTGAAAAAGGGTATTATTCCGTTTATTTTACAGCTTGT GCAAGAAAAACTAATCTTATTTAATACTACTATCAATTATGTTTGAGTAATTTTTTTGTGATTTATACTTCTAACTCATC AGTGGATATTAATCTAGTTTATTGCATGATCAAATGGGACAAAACTCAAGTTCTTATCGAATATGAGATTGAGATGTGAT TGTCTTGGATAAAACATTAGTCAAATGGTTTGGACTGTAATGGTAGACAGTCAGGTTTATAAGTTAAAAAAAAATTGAAC GGATTATGGATAAGCTATGTTTGAATACCCATTTAGATTAATGTAAAC
CDS sequence (LotjaGi2g1v0296000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGAACCGAAAACTTGTTGGAAATAGAAGAACAAGTGCGAAACAGAAACACAAGAAAGAAAACCAAGCAGTCGAAGAT GGAGCACGACGAAGATGAAGAAGCACCTCTTGCTGTTCAGATTCAAGGGCTTGATGAATCCGTTTCTCAACAATCTTCTG TTGGGGTCACCCTCATCACCGGCTATCTTGGTGCTGGCAAGTCTACTTTAGTGAATCATATTTTGAATTCGCAACATGGA AAGAGGATTGCTGTCATCCTGAATGAGTTTGGTGAGGAGATTGGCGTGGAAAGAGCTATGATTAATGAAGGGGATGGCGG TGCAATGGTTGAAGAGTGGGTTGAGCTTGCCAATGGGTGTATATGTTGCACGGTCAAACATAGTCTAGTTCAAGCACTTG AGCAGCTTGTACAGAGGAAGGAAAGGCTTGACCATATATTGCTGGAAACTACTGGATTGGCAAATCCAGCACCTTTGGCT TCTGTTCTTTGGTTGGATGAACAATTAGAGTCAGACGTGAAGTTAGATTCTATCGTCACTGTGGTGGATGCCAAGAATGT TCGCCTCCAGATTGATCAGCATCGTCGCTCATCTTCATATCCAGAAGCATATTTTCAAATTGCATTTGCGGACATTATAA TTCTTAACAAGGTTGATTTGGTATCTGCAGAGGGCTCTGGAGCTCTGAAGGAACTTGAGGAGGAAATCCATAACATTAAC TCCCTTGTGGAGATAATTCATTCTGTCAAATGTCAAGTTGACTTGTCTAAGATATTGAACCGCCATGCATATGATACTGC ACGTGCCCCACATTTGGAGACATTGTTGGAAGAAAGTTGTTCTTTGTCTACTAAAAAGCTTCATGATAGTGGTGTGAGAA CTATATGCATTTCTGAGCAAAAGACTATTGATATTGATAAGACTCGTATATGGCTTGAGGAGATTCTTTGGGAGAAGAAA TATGATATGGATGTCTACCGTTGCAAAGGAGTGCTGAGTGTTCAAAATTCTGATCAACTGCATACTTTACAGGCGGTGAG GGAACTATATGAGATTGTTCCAGCCCGCAAGTGGGAAAGAGAAGAAAACCGAATGAATAAGATAGTTTTTATTGGTCATA ATCTGAAAGAAGATGTTCTAATTCATTCATTCAGAGCTTGTGTAACCTGTTAA
Protein sequence (LotjaGi2g1v0296000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRTENLLEIEEQVRNRNTRKKTKQSKMEHDEDEEAPLAVQIQGLDESVSQQSSVGVTLITGYLGAGKSTLVNHILNSQHG KRIAVILNEFGEEIGVERAMINEGDGGAMVEEWVELANGCICCTVKHSLVQALEQLVQRKERLDHILLETTGLANPAPLA SVLWLDEQLESDVKLDSIVTVVDAKNVRLQIDQHRRSSSYPEAYFQIAFADIIILNKVDLVSAEGSGALKELEEEIHNIN SLVEIIHSVKCQVDLSKILNRHAYDTARAPHLETLLEESCSLSTKKLHDSGVRTICISEQKTIDIDKTRIWLEEILWEKK YDMDVYRCKGVLSVQNSDQLHTLQAVRELYEIVPARKWEREENRMNKIVFIGHNLKEDVLIHSFRACVTC
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 35 | 35 | - | – | |
| PANTHER | 31 | 385 | 355 | 4.3E-162 | – | |
| PANTHER | 31 | 385 | 355 | 4.3E-162 | – | |
| Gene3D | 52 | 265 | 214 | 4.9E-69 | – | |
| SUPERFAMILY | 55 | 269 | 215 | 1.69E-33 | ||
| CDD | 56 | 262 | 207 | 7.99981E-94 | – | |
| Pfam | 56 | 246 | 191 | 3.1E-54 | ||
| Gene3D | 272 | 389 | 118 | 3.1E-24 | ||
| SUPERFAMILY | 292 | 388 | 97 | 1.7E-20 | – | |
| SMART | 292 | 388 | 97 | 1.4E-4 | ||
| Pfam | 293 | 388 | 96 | 4.7E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi2g1v0296000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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