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Field | Value |
---|---|
Gene ID | LotjaGi5g1v0358000 |
Transcript ID | LotjaGi5g1v0358000.1 |
Lotus japonicus genome version | Gifu v1.2 |
Description | CobW-domain-containing protein; TAIR: AT1G80480.1 plastid transcriptionally active 17; Swiss-Prot: sp|Q8IUF1|CBWD2_HUMAN COBW domain-containing protein 2; TrEMBL-Plants: tr|A0A0R0I7G4|A0A0R0I7G4_SOYBN Uncharacterized protein; Found in the gene: LotjaGi5g1v0358000 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:67275526..67280977) extracted from Lotus japonicus Gifu genome v1.2.
CTAAGTTTATAAAACTTTGACCCTTGACCAAAAAAAAAACCAAAAAATCTGAAGTCTAAACCCTGTGGTCAGTGACAGTC GTTTCGTTTCTTCATCCATTTCCTCTTCGATGGCTTCGTTCGCTTTCACGGCGGAGCTAACCTCCACCGTCTTCGGCGCC GCTTATCGGAACCCTAAACCCTTCATTCCACTCCGAACCACCCTTCTCCCTCTTCTACGCGCCACCACCACCAAAACCAA AACCATAACCATAACCCACTCATTTTCCCCAACACTCGCTCGCAGAGGTTTCGCCGTCGCCGCTTCCACCTCAGCGCCGC CTCACTCTGAATCTTCCGACGTTTCCACCGCTATTCCCCCCGATAATCGCATCCCTGCTACCATCATCACCGGCTTTCTC GGCTCCGGCAAGGTATCCTCTTAATTTCCACTTCCTCATCTTCTTCGCAAACCTGAAGCTTCTGAAATGAACTAATTTGT TTTGAGCAGACAACGCTGCTGAACCATATTCTCACTGCCGAGCATGGAAAGCGAATTGCGGTCATCGAGAATGAGGTATG TATGTGTTTGTCATAGTAGATGCAATTCCCGCAGTTTCGTGTGAATTTGAATATGATTATTTGCTTTCTGGGTTGATTGT TTCTAGTTTGGTGAAATCGACATTGATGGTTCTCTAGTAGCTGCCAAAACTGCTGGTGCTGAAGATATCATGATGTTGAA CAATGGCTGCCTTTGCTGCACTGTCAGGGGTGATCTTGTTAGGATGATTGCGGAATTGGTCACTGCCAAGAAAGGAAAAT TTGACCATATTGTTATAGAGACTACAGGTAGGTAACCAACCAACTTTCATGTATCTATCTTTTCTTGTCACTATGTGTAT GTTATTGTTGCCAATTGCCATGCCTTTCATTAGTATCATCCATGTTTTAATCCTGTAAAACATTCTTCTTAATGTGAATG GAATGAACCTGCTCACTACGACTGCACTTAGCTTGTATTTTGACTGAGCCTACTGCTTCGCACCGCCACAGCGCTATTCC TTACATCAACCTAGCAAATTGATTTCAATAGTTGCAAAACTAGAAATATCATGTATTTGTCAGCACAATATAACCATTAA CCTATAAATGATGAAAATATAGTTAATTATTTCAACCACAGATAAACTCTTATTCACCAGTACTTTTTTCCAGTAACTTT GATGTGTTTTTATCATTTAAATTAAGTTAGTTATTTTTTTTTACCAAATTCAATGTTTGTATTTCTACAGGTTTGGCGAA TCCAGCGCCAATAATCCAGACCTTTTATGCAGAAGATCAGATTTTTAATGATGTTAAGTTGGATGGTGTTGTGACTTTGG TTGATGCGAAACATGCTCGTCTTCATCTGGATGAGGTTAAGCCAAAAGGTGTGGTCAATGAGGCTGTGGAACAGATTGCA TATGCGGATCGTATAATTGTTAATAAGGTATTGACTGATATATTCTTATTACAGAATACAGAAGGGCTTTAGTTTCATGT TAATGAAGCGTTTGGATTTTTTTAGAAAAGGGACTATTGATTTTGATTAAGTAAATATCTAAACAACTAATGGATAGTTT AGCTTTATTGTGTAGTATGGTTGACCTTGTTCTTCTGTTCAATGCGGATTATTCTTAAAATTTCAGAATGAAATGAATAT TTTCTTTGTGCCAGAGATAATAGCCTAATATTATTCTCTATTTTGCACCAGACTGACCTTGTTGATGAATCAGACATTAC TTCTTTGGTCCAGCGGATAAGGGTTGGTGTCCTTCTCTTCCTATTTTATATAAGTGATTAGTTTTATTTTAATTCTGTTT CATTATTTCGAGCACTCTATGAATGTTGCTGCATTTTTTAATTCAGAAAATAAATGGCTTGGCCAATTTAAAGCGGACAG AGTTTGGAAAAGTCAACTTGGATTATGTTCTTGGCATTGGGGGCTTTGATTTGGAGAGGTAGCCTTTTGTTCTTGTTTCC TACCTTCTGGGTTTCAATTGTTTTAAGAACAAGGAAATTGGAATTTGGGCTTACTTGTTCTGTGCACATTCCTTTTTCAC TGTTTGGTTCCTGCAAGACTGTACGCCTTTCAATTATGAATACTTGTTTACCTTGATCTTGGTATTTTTATACTGAAATT ATTCACATGACATTTTTTATGGCAATACCCTCTACCCTTGTCAATTCCTTTGCTTCACTGCCATGTAGTACATAATCTTA AGTGGATATTTGAATATTTCTGGTTTGGTATTCCTTCTGGTTACCTTTTTATGTCCAAGCTCCCATATATGATTTGTGTA TGTTTTCTTGATCTTTTTATAAGGATTGAGAGTGCTGTTAGTGGTGAAGGTGCAAAGGAAGATCATGTCCATAGCCATGA TCATGAACACCATGACCATGATCATCACCACCATCATCATGAGGATTCACTTGACCACAAGCATGGTACATTTTAATTTA TCTTGATTCAGAACTGTTTTACATGGCATATTATTCTTGTTTGTAGCACTAGTGATATTGTAGTGTATCCGATGTTTTAT TCTTGATTGCAGCACTAGGGACATATTGTAGTGATTAGTGAAACCCAGGTTTTTAGTCTTATTAATGGAGTTTTAACTTA TTTAGTTACACATATCTTATTTGAATCTCTAGTGACTATCATTATTTCCTTTGATATTAGTATTTGGATGGGGATCAGTT TTTACTTTTTACATAGTTGCTATTCAATTCAATGTTTTATCATGTTTATAAGGACATAGGATATCTTGTTTTGTTTACTT GCATTGTTGTGCTATGAAGTGAAAGAATAAATTTGATCTTTGTTTTATGTGCAGATCACCATGATCACCACTCTCATGAT CACACTCACGATCCTGGTGTTTCATCTGTCAGCATAGTTTGTGAAGGAAGCTTAGACCTTGAGAAGGTCAGTACTTGTAA ATTTGTCTACATATGCTTAATACCAAGTGTATTGATTTCTATTTTCCCTTTGGATGCTTTAGGAATGCTTTTTAGTCAAG AAGTTTATGTTCATGTAAAATATCAGTTGACATTTATGTACTGAGGGGTGAACTTGCTAACTTTGTCAGGCTAACTTTTG GCTTGGTACCTTGTTGATGGAACGGAGTGAAGATATTTATAGGATGAAAGGTCTTCTATCTGTTCAAGGAATGGATGAGA GATTTGTCTTTCAGGTGAACTTGAATTTCCTTTCCATGCTGTTATCTGTTATCATTCTCGATGTCCTGTTTCACTGAATT AAGTTTTTCTTACTTTTCTGTATCAGGGAGTTCATGACATCTTTCAAGGATCACCTGAAAGGTTGTGGGGGCCAGATGAA CCAAGGACAAACAAAATTGTTTTTATAGGGAAAAACTTGGATGCTGAGGAACTGGAAAAGGGGTTCAGGGCCTGTTTACT GTGATACCAGAAAGTTCAATATGCGTTTTTTTTTGCTCTCTATTTCGGCTGATGATGCAAGCTGAAGATTTGAGTGTTTG TATACCATGGAGAACTCTGAACTGGCTTACCGTATAAATAGGAAAAAGTGTTCCATTCCTTACTACTTTTCTATTACCGA TTATAAAGTATACCCAAGAAATTACTGATTATAAAAAATTAAATTAAAATTCAAACCTTGGAGGTATTATAAGTGTATTG TTGTTATTGATGTAGATAATCACAATTATGTCTTGCTAAAAACGCATGAGATTTCAAAAAATAATGACTAGATTACCGTA TGGATGTTATATCTTTCCAAATCCAGTAGACAGCTTTTTGTAATTGTGTAGCTTATTACATGGAATATGAATGAGTTTTC TTGTAGGGGTGTATGTGTATGAGATTATGCTTACGAAACCAAAACATGGAAGAAAACCCAACAGATTACACAAGTTAAAA AAAAATATATTGAAGAAGCAAGAAGGTTGGAAACATTTTAATCGTTTGAGGTACACCGATATAAAATACTGCCTTCAGAG TGACAAAGGCAATTTAAACCAACAAAGACATACATAATTTCAAACAGTAAATGTGAAAGCCAATGAGAAGCAAAAGCAAA CTAGTAATGTGTGAGGTAGACATTGAAATGGAGTATGGTGTCAACTCCATCAGTGGTGTGCTGGTCCTCCTTCAGAAGGG TCTCAAGTGCAGCATACCCTCTAGCATTCTCGTACTTCCCTGTCCCTCCAATCACAGCAACCTCAGAATTTGGAGACGCA GTCCTATGAACCCCGAAAAGGCTTATGCTATCGTCCACCACCCCATCATGATGCTCTCCACCATGCAGCAGGATTGTGAG CACCACGCTCTGGCTGGTACCATCCAATGAGCTAGCCAAGTAGAACCCTTGCACTCTCCCAACCACAGCAGAATCCAGCT CGTGCCCTTCGGTTATCTGGTCATCTATCACTGTCACGGTTCCGAACATGAGCTTCTGGAGTGTGAACCCAGAAGGAAGG TTCCCTGCTGAAACAAAAGGCTGGTTGTTGCCGCCTGAGACGACGTTGCTAGTGCCGCGGTTTTGGAACACAGTGGAGGA CTGAGCGGCGTTGAGGCCTACAAGATTTGGCAGGTTGTTGTTGGTGATAATGCCATTGATCTTGGGGTTGACTAGTGGGA TTCCTCCACTGATTGGGAAGATGTTGTTGTTGAGCTTGGAAAATGGTAGGCCTGTGACATCAGTGTTTGCTACTATTCCT GCTACTACTCTGGCTGATGGGTGTGACCCTCCAATGATATCATGCATGAAGAAGGATAAGGACGGTTCCTTTCCCACTGC TTCTGCGGGTGTTTCACCAGAGATAGCAGGGACAGGGACTTCAGCTTCTGGTTGTTGTGGAATTGCCACTGGTGGTGGTA CTGGGGCATCATCAACTGGGGCAGTAACAGGAACAGCTTCTGGGGCTTCAGCTTCTGGAACAGGTGAAGAATCAGCATCA GCTTCTTCGTCACCTGAGTCTATGTTGGCAGCTGCTGCTGCTGGTGTTTGACCACTTGGAAATGTGGTGGCAGGGCCTAC CTGTGGTGTGGTAACAGGAATCTGGGGTGTTGTGACCGGAATTGTTGTGGCTGCTCCTGGGAGTGGTAGATTGCCAATGG CTTGTGGTTCTTGTGTGTCCATTTCGTTGAGGTTTCTCGCAGAGTTGGCAATGAGAAAGGTTGTGGCTAGGAAGAAGAGG CAAATGGTAGCCTTGATAGTTCCATGGCTGTCTAGGAAGAGATAGGCCATTTTACACAAGAGAGGAACCTGTGTTGTAAT CTGCTAAGAAGGATTGTTTTGTTGTGTGTTAGAAGGAAGATTTAGTTGCTGATGAAGCTGATATCTGGTTGTGTCTATAT ATATACACTTACATATAATTGGGTGTGCTGGAAAGAAGGAGCAAGTGTGGAGCTGATACTATGGATTGGTTGGATGCTCT TTATAGGTTGTG
CDS sequence (LotjaGi5g1v0358000.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCGTTCGCTTTCACGGCGGAGCTAACCTCCACCGTCTTCGGCGCCGCTTATCGGAACCCTAAACCCTTCATTCC ACTCCGAACCACCCTTCTCCCTCTTCTACGCGCCACCACCACCAAAACCAAAACCATAACCATAACCCACTCATTTTCCC CAACACTCGCTCGCAGAGGTTTCGCCGTCGCCGCTTCCACCTCAGCGCCGCCTCACTCTGAATCTTCCGACGTTTCCACC GCTATTCCCCCCGATAATCGCATCCCTGCTACCATCATCACCGGCTTTCTCGGCTCCGGCAAGACAACGCTGCTGAACCA TATTCTCACTGCCGAGCATGGAAAGCGAATTGCGGTCATCGAGAATGAGTTTGGTGAAATCGACATTGATGGTTCTCTAG TAGCTGCCAAAACTGCTGGTGCTGAAGATATCATGATGTTGAACAATGGCTGCCTTTGCTGCACTGTCAGGGGTGATCTT GTTAGGATGATTGCGGAATTGGTCACTGCCAAGAAAGGAAAATTTGACCATATTGTTATAGAGACTACAGGTTTGGCGAA TCCAGCGCCAATAATCCAGACCTTTTATGCAGAAGATCAGATTTTTAATGATGTTAAGTTGGATGGTGTTGTGACTTTGG TTGATGCGAAACATGCTCGTCTTCATCTGGATGAGGTTAAGCCAAAAGGTGTGGTCAATGAGGCTGTGGAACAGATTGCA TATGCGGATCGTATAATTGTTAATAAGACTGACCTTGTTGATGAATCAGACATTACTTCTTTGGTCCAGCGGATAAGGAA AATAAATGGCTTGGCCAATTTAAAGCGGACAGAGTTTGGAAAAGTCAACTTGGATTATGTTCTTGGCATTGGGGGCTTTG ATTTGGAGAGGATTGAGAGTGCTGTTAGTGGTGAAGGTGCAAAGGAAGATCATGTCCATAGCCATGATCATGAACACCAT GACCATGATCATCACCACCATCATCATGAGGATTCACTTGACCACAAGCATGATCACCATGATCACCACTCTCATGATCA CACTCACGATCCTGGTGTTTCATCTGTCAGCATAGTTTGTGAAGGAAGCTTAGACCTTGAGAAGGCTAACTTTTGGCTTG GTACCTTGTTGATGGAACGGAGTGAAGATATTTATAGGATGAAAGGTCTTCTATCTGTTCAAGGAATGGATGAGAGATTT GTCTTTCAGGGAGTTCATGACATCTTTCAAGGATCACCTGAAAGGTTGTGGGGGCCAGATGAACCAAGGACAAACAAAAT TGTTTTTATAGGGAAAAACTTGGATGCTGAGGAACTGGAAAAGGGGTTCAGGGCCTGTTTACTGTGA
Protein sequence (LotjaGi5g1v0358000.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASFAFTAELTSTVFGAAYRNPKPFIPLRTTLLPLLRATTTKTKTITITHSFSPTLARRGFAVAASTSAPPHSESSDVST AIPPDNRIPATIITGFLGSGKTTLLNHILTAEHGKRIAVIENEFGEIDIDGSLVAAKTAGAEDIMMLNNGCLCCTVRGDL VRMIAELVTAKKGKFDHIVIETTGLANPAPIIQTFYAEDQIFNDVKLDGVVTLVDAKHARLHLDEVKPKGVVNEAVEQIA YADRIIVNKTDLVDESDITSLVQRIRKINGLANLKRTEFGKVNLDYVLGIGGFDLERIESAVSGEGAKEDHVHSHDHEHH DHDHHHHHHEDSLDHKHDHHDHHSHDHTHDPGVSSVSIVCEGSLDLEKANFWLGTLLMERSEDIYRMKGLLSVQGMDERF VFQGVHDIFQGSPERLWGPDEPRTNKIVFIGKNLDAEELEKGFRACLL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 37 | 448 | 412 | 2.9E-231 | – | |
PANTHER | 37 | 448 | 412 | 2.9E-231 | – | |
Gene3D | 85 | 294 | 210 | 4.6E-72 | – | |
SUPERFAMILY | 86 | 304 | 219 | 8.23E-40 | ||
CDD | 89 | 291 | 203 | 3.53224E-101 | – | |
Pfam | 89 | 272 | 184 | 3.0E-56 | ||
MobiDBLite | 304 | 352 | 49 | - | – | |
MobiDBLite | 304 | 350 | 47 | - | – | |
Gene3D | 329 | 447 | 119 | 2.1E-37 | ||
SUPERFAMILY | 353 | 447 | 95 | 2.09E-25 | – | |
Pfam | 353 | 447 | 95 | 6.3E-21 | ||
SMART | 353 | 447 | 95 | 1.4E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi5g1v0358000.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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