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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0146300 |
| Transcript ID | LotjaGi4g1v0146300.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | CobW-domain-containing protein; TAIR: AT1G80480.1 plastid transcriptionally active 17; Swiss-Prot: sp|Q8VEH6|CBWD1_MOUSE COBW domain-containing protein 1; TrEMBL-Plants: tr|A0A0L9TNH2|A0A0L9TNH2_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0146300 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:23607258..23615409) extracted from Lotus japonicus Gifu genome v1.2.
ATTGATTGTAAAATTGATGGAGTGAAAGAAAAACTCAATATTTAAAGACATCATTTTGATACTACAAATTACAAACATAA ACCCTAATAAGGGTTTAAAGTTTAAACCATTTCTACAAACTTGTGCGGTGAGATTCTGTTCTCTTCCACTCCATAGTTCC ATTCCATTCCAGCAAAAATGGCTACCACGTACATGGCTCTAAGGACCACAGCAAAAACCCTTCTGGGCGTTGCTCACTCT CCCGTTCCACATTCTTGCCACCCTCTGAGTTTGATCAGAACCCTCCATTCCTTCGTTTCGCGACACCCAAGTTTCCATCA CCCTTATTCTGGAACCTTCAGCTTCTTCTTCAGGGGCATGGCCTCAGCTTCAGCTCCAAACCACAATCTTGATGAAGCGG CTTCCCTCGCCCCCGATAATCGCGTTCCAGCTACCGTTATAACTGGTTTTCTTGGCTCCGGAAAGGTACCCTTTTATCAA ATGCTTGTATTTGATTCCTTAATAGCACTGAATAATGAGTTTTCTGTAATGCAGACTACTCTTCTGAATCACATTCTCAC ATCCCAACATGGCAAGCGGATAGCTGTGATCGAAAACGAGGTATCGTGTTGTTGTGTATGGGCTGCCCATACAATTCCAC AATAATTCTGGGTCAGTCTTATTCTTTATATTACAAGGAGTTCAATGTAATTAGAATATTAAATGATGGCCCTGTCAAGT TTAGCTGATAATTTTTAATTTCAGTAGTTGTACCATTTTTTTTTTTTTGAATTATAATTTGGCCTAGATAAAGCGTATGA CATCATAGTATGGGTGCTTCTTCTAATGATATTGATTCAGGCAAAACTAGTCACTAGCTGTACACGTTTATGATATACTG CTTAAAGGTCATGTGTTTTATTGAAAAAATTACTACTCAATATGCTATTTATTTGGAGCAATTGTAAAGTAAAGGAAAGA ATTTCAGCTCATAGAGTGTATTAGAGGATAAGCTGAGATAATGTGGGTAAACTGTTATTCATGAAAACATCTCGTGGTAA ATGCAGTTTGGTGAGGTTGATATTGATGGATCACTGGTTGCTAGTCATTCTTCTGTGAGTGAAGACATTATCATGGTTAA CAATGGCTGCCTATGCTGTACTGTGCGAGGAGATCTAGTTAAAATGCTACTGGAGCTGGCTAGAAAAAAACGAGACGTTA TTGATCATATTGTTATTGAAACCACAGGTTTGTAAATTGCTGATGCTGTTCAAAGAACTTTTGCATTTGTGCATTTTGCA GTGGGTATGGAGGTGTTAGTGTGTGGATATTTACTTACGAGTTGAAACTAAACGGACTTGTGTAGTTACTCTTATTCTAG TGACAGGCTGAAATTCAATTAATAAGGTAGTTTTATATTATGAAAAGGGATTATATAAAATGAAGATGGATTGGCAAAGC ACAATGGATCTTCATTATTCTTGCTGCCTTGATGCATCGATTTTACATCTGGTCATCTGGTGCTTTAAAATCATTTTGAT ATTCTCTTCTTTACTTTGTTCAGAAGCTTAGTGCTTCACATGTATGGATACATAATTGAGAGCATGATTAAAATGTGTGT TCTCTTGTTAACTGTATCTGTTGGGTGCACCGTGCATGAAAGTTGAAACACTTGAATAAGGCATATTACTTTAATATTCA ATCTTTAAGCCTTTTTACAGGTCTGGCAAAGCCAGGCCCTGTTATTGAAACATTTTGCAGTGATGAACTGGTTTCTCAGT ATGTGAAACTTGATGGAGTTGTAACTTTGGTTGACTGCAAGCATGCCATGCAACATTTAAATGAAGTAAAACCAAGATTT GTGGTTAATGAGGCAGTAGAACAAGTTGCATATGCTGACCGAATCATTTTGAACAAGGTAAGCTTCTGGTTTTAAGATTC TATCATGTCATGCTATTTCTGTGTGCACTTCAGCTTTGTTTTGCTTCCAGTATTGACTCCTAATATATGTTTTAGTCTGC ATTTCTAGATTTTGATTATTTTCAAATGCCTTTGCAGATAGATTTGGTTTCTGAATCTGAGTTAAATGCACTAACTAAGA AAATTAAGGTATGTCTTTATTACTTATGGATCCTCTAGACATTGTTTTACATAATTGAACTGGGACTGTAATAGAATTTT ATGCAGAAAAAAGATGGTGTGCGTCATGGTGGGTTCATGAAATGAAATGTGTCACGATATAGAGCCTGCCTTCTCCTAAA TGATTCCATTTCTATGATTACAATTTTGATTGTTGAATGGATGTGGGTTCATAGTGAGATTCAATTAAATATTCTTAACC ATGTTTTTCATGGTGATTAACAAATTACAAAAGTTCTTCTCTCCTGATTTTTTCTATACTGATTTAACAGACCTGTAGTT ATGTCTTAAATCACTATTCTTGTTCTAGGCCAAAAGATATTGAACATGTAATAATTGTTACGATTGATGCTGTTATTATG AAATGATGTGTGTGTGTTACAAGTTACGACTGGCAGTGATACAAGCAATGACGAATCTTGAACAAGAAATTTGGGGGAGC CAAAAGAATATTCTTATATAAATTAGATATATAAGAGGAGTTTGATAAGTATACAGTGAAAGTGTAAATAATATTTAAAC AGACATCCAATTAAACTTCGTTGATTTTCCATCATTATTAAATTTAAAATAAAAAACTAAATATGTAAAATGGAGAGATG TAATTGGAAGTTCGTTAAAACTATTTATATTGTTTTTTATCAGCTTCTATAGTATTGCATGTGGATGTACCTAGCCTGCT CCCCAAGATAAAATGATTATGGAATTAGTTTTTTATTTTTGTGAATTTTTGCCAGCACATCAATGGAATGGCACAAATTA AGCAAGCTAAATTTGGATCTGTTGACATAGACTTTGTTCTGGGGGTAGGAGGATATGATCTTCAGAGGTAATAGGCATTT ACTTTGTATCTTTTAAAGTATTGCTACCTTGAGTTTTCTGTTTTAGCTATTGAAGTACTTCATACAATGGCATGGTCACT GTTTCATTCATAAACAATATGGCTACAACTATAAGTATGACAAGTCATAATGCATATTTACACAAATGTCTGTATTTGCT GCAAACTTTTCCGTGCATCAACCAAGTTGCTTTAATATTGTAGAATTGAATCTGATGTCCATGGAGAGTGTCCCTCGTCG GCTAGCCATCAAGATGATTCCGGACATGGTACTTTTTCAAAACCCAATTTTCACTTGTTTTGTTATTTTTCCTACTGTGT TGTTAGAGTTGACCTTGTTATAAGGTCAATGATATTAAAATGGGAAACCGAAGAGAACCTTTTCGTTGAGGAAATAACAA TCGACTTCTATACATTTTGTAATCTCATGAAAACTGGTTTGAGGAGAGGTACAGAGCTGACTAGTTATCACATTAACTCA ATGAGACCAACCTTGCGGAACACCAACTCCTAGAGTAGATCGTCTATCACTTGACTTGGCAACAACACTCGAGTAGATCG TCAGCTTACATTTATGTGAGCCGTAACTCGAAACTCAGCTTTCATACTTGACTTGGCAACAACACTGCTTCTTACTCTTC TACGAGATAAGATTTCCACTCATAATACGCAATAACTTACAATGTCAGTATGACCTTGGTCAGTGTAAACAAGACCCTTT GCAGTTGACCCTTTGATGTACCTAAGGATTCTTTGTAGCATCAGCACTCAGCAGTATATGTTGCATTCTTCTGTCCTAGC CAGATCCGCTACCACATTGGTAGTTTGGTACAAGTTTGCGAATTTAGGGTTTCCTCGATTGTACCAGTTTTAGTACTCTT TTCTGGTCTAGTTCTATTAGAGGGCTCTTTTGTTTTATTGTGGAGATTTCTTTTCAATAAAAATAGTTTTCTTTATATAT TCTAATTCAGTTCTATCAGTTTAGCCACCCCAAATCCACCTCCCTTCTTAGGGGTTGTCTAAATCACCCAACGTAAATGT TGGGTAAAATCACCCTAGTCTTTGGTGGCCCAATAATATTGACATGTATCATGAGCTAGAATTTTTTAAAACACATCTCA AAATATTATTGGGCCTCCTAAGCTAGGGCGATTTTACCCAAGGTAAATCTTGGGTGACTTAGACAACCCCTTATTTTAAA ACATACACTCCTTTAAAGAATCTTGCTAAGCAATTGGATCTTACACGTGTACAATATAAATGATAAAGTAGGTGTGTTCT TTGCTAGATTACAGTTCGATGAAATTCTTGATTCTCCAATTTGCCTATTCTATCTCAATGCTAGATAGATCTGCAAGGTT ATTTCAAGGCCTTTGTTTTACTTTTCTTCTTAGGTTGAAAAGCTGTATGGTCTGAGACTGAGCCTAAACTTTGGAAATAA TTACAGTCTGTATGACTTGATTAATGCACTTTGCTTCCGCTGTACTTCTGCTCATACTGTTGCATTGTGATTCTGCATTA ATTCATTATTCTGAACATGTCTACAGAACACACAGGGCATCACCATCACGATCATGTACATGATTCTGCTGTCTCCAGTG TCAGTATTGTTGCAGAGGGAACCCTAGATCTTGATGAGGTAATAATAGAGTGTGTTTTGGAAACCATAAAACTGACTTTA TCTCCAATTCCAATGAAAAATAACGGAGAAACATGTTTTTCAAGACAAACGTGAAAGCTCCAAATTGGAGCATTAAGAAA ATATCCGTTCATGTTCAATGATAACCAGTATAAAAACACACTCTTAACCCTTTAAGCTTCAACTTTTATTCACATCATTG GTGGTTTTGTTGATGGCTTTGTCTTGGGTCATGAAGAGCAAGGCTTGAAATCGATGTGTTGTACTTGCAATGCATAAGGT ATATGAATTTTTCATGAAATTGCTGCGGAATGTTATTTATAGATCTTTAAATAGAGTATAAAATAGTGTCCTGTTTGACT GGGTTATTATGAAATGACTCGTGATATATTGATCACTGATTTTTCTACTTTCAACCACCCCCCACCCCCTTTGTGTTGTG TTTATGTGTTGACGTTTATGATTAAATGATGTAATAGCATTCAACGTTATTTCTTCCTTTGTCATTAAATGATGGTCTAG GTTGACGATTGGCTTGAGAGGTTGGTTGAAGAAAAAGGAGAGGACCTATACAGAATGAAGGGTGTCTTGTCAGTGGATGG TTCTGATCAACGATATGTGCTTCAGGTTCCCTTCTATTCATGTTTATATGCTATCACGATTCTATTACCAATCTGCATTT TCTGAATTGTTGATCTCAAATTTACCCCCATGCCTTATCTTACCCATCTTGCCTTATCCTCTCAGGGGGTGCATTCCATA TTAGATGGCAGCAAAGGAAAAGAATGGGAACCTGAAGAAAAGAGGATAAACAAACTTGTGTTCATTGGAAGGAATTTGGA TGAAACCACCCTTAGAAAAGGTTTCAGAGGTTGTTTAGTCTAGTTTTGAAACAATGTCATGGGTCAACTTCTGAAGAAGC ATCCCTTATGGTCAGCACATTGAACCACAATCGGAAAATGCTTGTTATGTAGTGCTAATTTTATCTTATACTTTGTGCAT GTCAAATTACATTGAAACCAATATATTAGATGTAAATTAAGAGTTTGTGGTATAGTAAACAACAGGTTGTTTGGTATTAA TACTTAATAGGACATGTTAAAGCATACGGGTTATGTTCGCATATTAATAGTAGAACAAATAGGACATAAGATTTGCGTAA GGGTTCGATTTGGGCTGTGTAATGAAGAGAAATTTGTTGGGAGAAGCCTACCCATTGAATGTGATCTCCAAGTCATGAGA GGATTAGTCTCATGATAGCTGATTTTGAGGATATCTTGGTAATAGAAAATAAGGACATCAAATGAATAAAAAAACATTAA ATTGACATTCAACGAGAAATCTAGTTTATTCTCCACCAATCTATAAGCACAAAATCTGCTTAAATTAATGTTATTTTAAC CAACAATCACGTTCATGCTTGAACCAGTGACCTCATACAGAGATTTCATTTTACACATAAATTTTGAGGTACTCATCCAT GCGTGTGTAGTTCACTTCAGGGTAAAGCTTTGATGCTTCTTCTCCATCGTCTCCAATTTCAAAATTTGTTATGCATCCCT CGTAGAAAATATGGAGGAAGTGTCCCATTGCTACTTGAAGTTTATAATCCAACCCTGCAAATCAATTTCACATAAATCAG ATACTACAATTTTTCAAACACAACTAGGTACATAACTTAGTGAACTCTTACTATGTTTAGGACAATTAATCGAATGTGTT GTTACCTTTCAATATTGTAAGAAACTCTTCAGCAGGTATGTATGTCTTCTCCAGTTCCTTTCCAATAAGTTTCTCCCAAA TTCCAATAAGCTCTCCTTGGGAGAGAACATTTTGTGGTGGCCTCATGTACAATGTTTTGTTTAAGGTACTAGGATCATCT ATTGTCTTTATTGTATATGTAGCAACATCATCTTCATCCATAAAAACAGCTGCAATATTCATGTGTTCATAGAAATGTCA GAATAATATACTTTATGGATACCAAATAGAAGATATTTATTTGATCAGATTGTGTTTGCTGAAAAACTTATGAAACTCAT AAGGGTACCTTTTTGTGTGCCATCTCCAAAGAGATGCACCTTTTCCCTTGGAGGCACAAAAGACCCCATTTGAGAGAGGC TGCCAGCAAAGTATCCAGCAAAAAGGTTTGCAGAGATGTAAGTGAAAGGGATGTTAGCTTCTTCAATTGCTTTCCTTATA GCCATTTTGTCATCAAATGTTACCCTTCCTGGTTCTAATGCGTGTCCCATCCTAGCTGAGTCTAGGCCAAATTCAGAAGG TAAGAAACGCTGTAAGGGAGGAGAAGAAGAGGTTTATAATAATGTTAGAATGTGTATAAGCATGTCAAGTTGGAAACTGA GAATAACCAATCTTGTGCATGATTCATGAAATATAATACATTGGTACTCCCATATAAGGCACCTGAATTTTGTTTAAATT GTTGAAGAACTTCATTTTGATAAAAGAAGAAAATTATTTTTGTGTGATTCACTGGAAACTAAAGTTACAAGAGATGTGTA AACTAATCCTGCACAGGCAATCAGTTATGAAGCGTAATTGCACATGTTTATTATAAAAGATAAACATGTGTACATGCATC TTGGTACAAAATGGAAAGAGACTAATTAATAATACAATGAACCTAACTCATGATCTCATTGTTTTTGTCTACATCCTATC CTCTACCTAGCCACTTTCATTGATATAAAGCAAGTGTTTGATTAAATGTTTAAACAATTTTTTTGTGTTACTTGTAAATA TTTTTCAGCTATTTCAATAATTTTTTCAAAAAGTATTTATGAATATACATTTATTTCGCATGTCAGAAAATTATTAAATA AGTACTGAATTAAAGTATTTACCTAAATATGCTCTCAATCCAAGTGAAAACCGATGTTCATCAAAATGAAGAACAGAGCA ATGAATTGAAAAGAAACAAAACAAGAGTCAAAGTGTGTATATGTTCACCTTAACATTGCCAGCTTCCTTAATGGCATCAA TCAATTTGAGCTGCAAGCTGATGCAGTGAGTCCTGATATGAACACCAGAGATGGCACTGATGACAACATCAACCTTCTTC ACCGCATCCACAAGGCTCTTGTGATCTGAGAAAGAAGCCTTAACAAGATGAGCACCTTGCTTCTTGAATGAGAGCAGCAT CTGCAGCTTCTCTATTTGAAGACCAAGTTCTGGACGCTGAAGTACATAGGTTTCATGACCCTGTTCTAGACTTGCCTTCA CTATTCTCCTCCCTATGTACCCTGTTCCTCCCACAACAAGAACCTTGCTCTTTTCCATTTCCTTTCTCACACTCTCTCTG TTTCTTTCTCTACCCTTTTACTTCAATGTTTTGGGGTCCTTGAATTGGGCTTTTATTATGAATTCTTCAGCAGCCACTCC CTGCTATTTTCACTAGTAGTGATGTTTTTATATTAATTAAATTGGTGGGGGTAGACGGGTAGGTGGAGATGCCAAACAGA ATTTGCAGTCTTACTTGTGGATTTGAGTCTACCGTAGTTGACTATATGCGTTTAGTAAGGAGCCAGTTTTGA
CDS sequence (LotjaGi4g1v0146300.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACCACGTACATGGCTCTAAGGACCACAGCAAAAACCCTTCTGGGCGTTGCTCACTCTCCCGTTCCACATTCTTG CCACCCTCTGAGTTTGATCAGAACCCTCCATTCCTTCGTTTCGCGACACCCAAGTTTCCATCACCCTTATTCTGGAACCT TCAGCTTCTTCTTCAGGGGCATGGCCTCAGCTTCAGCTCCAAACCACAATCTTGATGAAGCGGCTTCCCTCGCCCCCGAT AATCGCGTTCCAGCTACCGTTATAACTGGTTTTCTTGGCTCCGGAAAGACTACTCTTCTGAATCACATTCTCACATCCCA ACATGGCAAGCGGATAGCTGTGATCGAAAACGAGTTTGGTGAGGTTGATATTGATGGATCACTGGTTGCTAGTCATTCTT CTGTGAGTGAAGACATTATCATGGTTAACAATGGCTGCCTATGCTGTACTGTGCGAGGAGATCTAGTTAAAATGCTACTG GAGCTGGCTAGAAAAAAACGAGACGTTATTGATCATATTGTTATTGAAACCACAGGTCTGGCAAAGCCAGGCCCTGTTAT TGAAACATTTTGCAGTGATGAACTGGTTTCTCAGTATGTGAAACTTGATGGAGTTGTAACTTTGGTTGACTGCAAGCATG CCATGCAACATTTAAATGAAGTAAAACCAAGATTTGTGGTTAATGAGGCAGTAGAACAAGTTGCATATGCTGACCGAATC ATTTTGAACAAGATAGATTTGGTTTCTGAATCTGAGTTAAATGCACTAACTAAGAAAATTAAGCACATCAATGGAATGGC ACAAATTAAGCAAGCTAAATTTGGATCTGTTGACATAGACTTTGTTCTGGGGGTAGGAGGATATGATCTTCAGAGAATTG AATCTGATGTCCATGGAGAGTGTCCCTCGTCGGCTAGCCATCAAGATGATTCCGGACATGAACACACAGGGCATCACCAT CACGATCATGTACATGATTCTGCTGTCTCCAGTGTCAGTATTGTTGCAGAGGGAACCCTAGATCTTGATGAGGTTGACGA TTGGCTTGAGAGGTTGGTTGAAGAAAAAGGAGAGGACCTATACAGAATGAAGGGTGTCTTGTCAGTGGATGGTTCTGATC AACGATATGTGCTTCAGGGGGTGCATTCCATATTAGATGGCAGCAAAGGAAAAGAATGGGAACCTGAAGAAAAGAGGATA AACAAACTTGTGTTCATTGGAAGGAATTTGGATGAAACCACCCTTAGAAAAGGTTTCAGAGGTTGTTTAGTCTAG
Protein sequence (LotjaGi4g1v0146300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATTYMALRTTAKTLLGVAHSPVPHSCHPLSLIRTLHSFVSRHPSFHHPYSGTFSFFFRGMASASAPNHNLDEAASLAPD NRVPATVITGFLGSGKTTLLNHILTSQHGKRIAVIENEFGEVDIDGSLVASHSSVSEDIIMVNNGCLCCTVRGDLVKMLL ELARKKRDVIDHIVIETTGLAKPGPVIETFCSDELVSQYVKLDGVVTLVDCKHAMQHLNEVKPRFVVNEAVEQVAYADRI ILNKIDLVSESELNALTKKIKHINGMAQIKQAKFGSVDIDFVLGVGGYDLQRIESDVHGECPSSASHQDDSGHEHTGHHH HDHVHDSAVSSVSIVAEGTLDLDEVDDWLERLVEEKGEDLYRMKGVLSVDGSDQRYVLQGVHSILDGSKGKEWEPEEKRI NKLVFIGRNLDETTLRKGFRGCLV
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 24 | 424 | 401 | 5.3E-226 | – | |
| PANTHER | 24 | 424 | 401 | 5.3E-226 | – | |
| Gene3D | 80 | 288 | 209 | 2.1E-71 | – | |
| SUPERFAMILY | 82 | 278 | 197 | 4.31E-36 | ||
| CDD | 84 | 286 | 203 | 5.17895E-100 | – | |
| Pfam | 84 | 269 | 186 | 3.8E-55 | ||
| MobiDBLite | 298 | 328 | 31 | - | – | |
| MobiDBLite | 307 | 327 | 21 | - | – | |
| Gene3D | 310 | 423 | 114 | 1.1E-39 | ||
| SMART | 329 | 423 | 95 | 1.0E-13 | ||
| Pfam | 329 | 423 | 95 | 5.1E-22 | ||
| SUPERFAMILY | 329 | 423 | 95 | 1.1E-24 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
Expression pattern of LotjaGi4g1v0146300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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