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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR011641
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 14 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.420s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj1g3v2095540.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508782580|gb|EOY29836.1| chr1 24799615 24811039 -
2 domain predictions
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Lj2g3v1987560.1
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508776861|gb|EOY24117.1| chr2 29449001 29460478 +
2 domain predictions
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Lj2g3v1987560.2
n.a. Uncharacterized protein isoform 1 [Theobroma cacao] gi|508776861|gb|EOY24117.1| chr2 29449001 29460478 +
2 domain predictions
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LotjaGi1g1v0410100.1
n.a. Glycine-rich protein; TAIR: AT5G11700.2 ephrin type-B receptor; Swiss-Prot: sp|P06882|THYG_RAT Thyroglobulin; TrEMBL-Plants: tr|K7KU15|K7KU15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0410100 LjG1.1_chr1 90050002 90067328 -
2 domain predictions
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LotjaGi1g1v0410100.2
n.a. Glycine-rich protein; TAIR: AT5G11700.2 ephrin type-B receptor; Swiss-Prot: sp|Q641W2|MYG1_RAT UPF0160 protein MYG1, mitochondrial; TrEMBL-Plants: tr|K7KU15|K7KU15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0410100 LjG1.1_chr1 90053245 90066841 -
2 domain predictions
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LotjaGi1g1v0410100.3
n.a. Glycine-rich protein; TAIR: AT5G11700.2 ephrin type-B receptor; Swiss-Prot: sp|Q58464|Y1064_METJA Uncharacterized acetyltransferase MJ1064; TrEMBL-Plants: tr|K7KU15|K7KU15_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0410100 LjG1.1_chr1 90053245 90066841 -
2 domain predictions
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LotjaGi2g1v0417200.1
n.a. Glycine-rich protein; TAIR: AT5G47020.1 MraZ; Swiss-Prot: sp|Q5H8C4|VP13A_MOUSE Vacuolar protein sorting-associated protein 13A; TrEMBL-Plants: tr|V7CH42|V7CH42_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0417200 LjG1.1_chr2 91502872 91516746 +
2 domain predictions
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LotjaGi2g1v0417200.2
n.a. Glycine-rich protein; TAIR: AT5G47020.1 MraZ; Swiss-Prot: sp|Q5H8C4|VP13A_MOUSE Vacuolar protein sorting-associated protein 13A; TrEMBL-Plants: tr|V7CH42|V7CH42_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0417200 LjG1.1_chr2 91503052 91516479 +
2 domain predictions
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LotjaGi2g1v0417200.3
n.a. Glycine-rich protein; TAIR: AT5G47020.1 MraZ; Swiss-Prot: sp|Q5H8C4|VP13A_MOUSE Vacuolar protein sorting-associated protein 13A; TrEMBL-Plants: tr|V7CH42|V7CH42_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0417200 LjG1.1_chr2 91503071 91516479 +
2 domain predictions
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LotjaGi2g1v0417200.4
n.a. Glycine-rich protein; TAIR: AT5G47020.1 MraZ; Swiss-Prot: sp|Q5H8C4|VP13A_MOUSE Vacuolar protein sorting-associated protein 13A; TrEMBL-Plants: tr|V7CH42|V7CH42_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0417200 LjG1.1_chr2 91503678 91516239 +
2 domain predictions
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LotjaGi2g1v0417200.5
n.a. Glycine-rich protein; TAIR: AT5G47020.1 MraZ; Swiss-Prot: sp|Q5H8C4|VP13A_MOUSE Vacuolar protein sorting-associated protein 13A; TrEMBL-Plants: tr|V7CH42|V7CH42_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0417200 LjG1.1_chr2 91503678 91516239 +
2 domain predictions
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LotjaGi2g1v0417200.6
n.a. Glycine-rich protein; TAIR: AT5G47020.1 MraZ; Swiss-Prot: sp|Q5H8C4|VP13A_MOUSE Vacuolar protein sorting-associated protein 13A; TrEMBL-Plants: tr|V7CH42|V7CH42_PHAVU Uncharacterized protein; Found in the gene: LotjaGi2g1v0417200 LjG1.1_chr2 91504959 91516239 +
2 domain predictions
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LotjaGi4g1v0443100.1
n.a. Glycine-rich protein; TAIR: AT5G11700.1 ephrin type-B receptor; Swiss-Prot: sp|Q9KS12|MARTX_VIBCH Multifunctional-autoprocessing repeats-in-toxin; TrEMBL-Plants: tr|K7L4P8|K7L4P8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0443100 LjG1.1_chr4 81658446 81675129 +
2 domain predictions
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LotjaGi4g1v0443100.2
n.a. Glycine-rich protein; TAIR: AT5G11700.1 ephrin type-B receptor; Swiss-Prot: sp|P24756|A53R_VACCW Truncated secreted TNF-receptor-like protein A53R; TrEMBL-Plants: tr|K7L4P8|K7L4P8_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0443100 LjG1.1_chr4 81658811 81672355 +
2 domain predictions
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