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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0265800 |
| Transcript ID | LotjaGi2g1v0265800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosome biogenesis protein WDR12 homolog; TAIR: AT5G15550.1 Transducin/WD40 repeat-like superfamily protein; Swiss-Prot: sp|Q9LF27|WDR12_ARATH Ribosome biogenesis protein WDR12 homolog; TrEMBL-Plants: tr|I1LWS1|I1LWS1_SOYBN Ribosome biogenesis protein WDR12 homolog; Found in the gene: LotjaGi2g1v0265800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:73527940..73534307) extracted from Lotus japonicus Gifu genome v1.2.
CTAGACCCTAAAAAGAGGAGCCTAAACCCCATTGCAAGTTAAAAGCAGTTGAGCTAAACCCCTAACTCCTTCCTCCAGCT GCCGCGTCTCCGTCTCTAGAAGAAGAAGAGTGATGGCCGAAGACGGTGGTGAAGTTAGCACCAGGAGGATCCAAGTGCGC TTGGTGACGAAGTTGGATGAACCCTACAAAGTTCCGACCGCCGCCATCGCTATCCCCGCCGACCTCACCAGACTCGGCCT CTCCTCCATTGTCAACGCCCTTCTCCGAAACAAAGACGCTGATCATAATCCTGAACCCTTTGATTTCTTGATTGATGGCG AGTTTGTTCGTATGTCGCTTGAGCAGTTTCTTCTCGCTAAAGGAATTTCCACGGTATGTGATGAAATTTTAACTTGGAAG TTGGAACTGGATCTGTTTGAAAAGTAGGCCTAGTAGGACTAGCTTTTTTTATCTATTGGAATTTGGATTACAATGATTTT ATTTTGATTCTGTATGTTCTTTTATTGAAGCTTTCATTTGTGGTGTAAGCATGTATGTTTCAATAAAAAAAAATAAATGC TGGTTTTTGTTATGGACTTACGGGGATGGTGTCGAATGTGATGCTGTGGTTTTTACATTTAGGTAGTCTTGATGGAAGTT GTGACTGATATAGTTTTTGCCAGAATGAGGTGGTTCGAGTTAAGTCAATGTGGCAATTGCAATAGTTGGTTACAATTGCA CTGTAGTCGTGAGTCGTGACCGACTCAGTTGGATTCAGATAAATTGCAAATTGACTTTTTTTTTGGAAGATAATTGGTTC CTAGTTCCTATGGCTATATTCAGCATTTCAATTTTTTTTCCGACAAAAACATAGAAAGCTGATAACCATTAGCGTCCTGT GCTTATCTGAATTCAAAGTGAATCTCAAATTGAACAAAACCTTGGGTTTCAATCTGGAATTTAAGGATTTTGTAACCTTA TGCGACTTACAAGGAAAATGTTGAAATTTCAGGGATTGAAATTGGGTATATGAAACAATAATTTATCCATTTGTTTAATT TTTGTTGTAACAATGGAAACAAACAGTTTTTACTTTTTGTTCTGATGCCATTGTCGCATTGCTAACTACTGCTGATGATC TATTTTAGGAAAGGACATTGGAAATTGAGTACACAAGGGTTGTAGCCCCACGAAAGGAGGAAGACCCTTCTCTACATGAT GACTGGGTCAGTGCTGTTGATGGTTCTTCTTCTCGGTAAGCTTGTAATGTGTAATATTTTTTATGGAAATTTTCCAAGAC TTTTTATGATTCATCCTTTCCATAATGGTTCGATTTTAAGTTTTCTATTGACTCCAATCTTTAATAATTTCGGCAACTGG AAAAATTTAAGAAGAAACTCCTTTTGCTTAGCCATTGCTTGTGAAATCTTTTTATGAGCTAGAAAAGGTTGAATTTAAGT CCTTGTGGTTGGTTTTTGTTTGGTTTCCCTTAATCTTTTGGTCATATTTGGTGATGATGGCAAGAGAGTTGGTGTTGTGA TCGCGTAGGGTCTGAGTGCATCATCAATGGTTTAGTGTTCATTGTATGCGGTTAATTTGTAGTGTGCTGAATGGCAGTAG CCAGAGGACACCCTGCTCGTGAATTGGCTTAACTTTTGGTCTTTGGATAAGTGCTTGATTTTCTATGACCTATTTGTATA ATCCTTGTCATTGTGCTATTTTCACTGGCTAAATTACTAGAATTTTGGTTATTTTTAGCAAGTTAATTGTTGTTTGAAGT GAATGTCCTTCAATAAGAATATAAAGTTTGACAGTTTCACTATTTCTGCAGGTTTTTTTTGACTGGGTGTTATGATGGTT TGGGAAGGTAATAGACTTGCTCACCCACTTTTGCTCCTCTAGAATTGTTGGCATATTTTATGTTCATTTGATTACTTTCT CCATTCACTGAGTTTCCACCTTGATATGAAAAAATATATATTTTAGGGTATGGAAAGGTGCTGGATTATGTTCCCATATA TTGGAAGGACATAGCGACGCTGTCTCTTCTGTTTGTATCGTTAATCCAGAAGGTATAAGAAAGCAAAGGATTTTCTCTTA CATGCTGCCAAATTTGATTAGTTTTCCGATTGCCACTAGTCAAATTTGAAATTTTAGTAGATGCTTAATTTTTTTCTGTT GAGATAGTATAACTGAGCTTATGCCTTATGGCTGATTTATCTTGTCCATGAAGTGCAATGTCATTCTACTAAATTATTAC CTATTTACTTATTCTCCTCTTTCCATTCCTGTCTAAGATGGTGGTGATTATGTTTTTTATGATATTAGTCAGTGTTCCAC TGTTTTAATGTGCTTAAAAGACTTTATTTCTTCAACTGCTCGAGATAGATATATACCGTGTTCACCAGTCACTATGCTTT TATGCACACAGTCATTTATGCTTGTATCATGCTTTTAGGGGAAAGCTTTAGCTTGGTGCACATCTTGCACGTTTAGGTCT AATTTATATGCATAGTGTTCCATAATATTGACTCTTAAAACTATACTTGAGTTGTTATCTTGCTTTGTACTGTAATCAGG TGAGCAAACTGTTACTATAGCTACTGCTTCGAAAGACCGGACACTAAGGCTATGGAAGGTAACTACCAGAAGCTGCTGAA CTAAATTCCTTATATTGAGCTTATGCTTACTATTTCATATTTTCTCTTTTGTGTAAAAGCTCAATACCAATGAGGCTGTC AACACTCCTACAAGGGTTAGGGCTTTCAAAATCTTGCGTGGTCACAAATCTTCTGTACAGAGTGTTGCCGTGCAGACTTC TGGAGAAATGGTTCCTATTTGCTTTTCTTGTTTAAGTTTCTTCACATTCCCTGTCCTTGGTTCATGTATAGTGTAACTGT GGTCTGTAACATCAGTCTTCTGTTGTCTGATATGCTTAGGTTTGTTCCGGTTCTTGGGATTGCACCATCAACGTTTGGAA AACTAGTGACATTAATGCAGAAGATGACCTAGTTTCTAAGAAGAGAAAAGTTGAAGGTCAAGTGAAGGACTCTCAATTAG AGGTTTGTACAGGTTCCTTGCACTATATTGTTTTACTTGTGTTGTTAAAATTGGGATTTAAGGTGTCACATATTTTTCAC CTGAAGATTATTTATTTGGAAGCCTTATTTAACTTGTAAGGATTGATTAAAAATCATATTTGACTCTTTCTTCTCTGAAG TGTTTTAATTGGTAAGTGCAATAGTAAAAAGTTAAGGATGGTTCTATTTGTATTTCCCACTTTGTTTTCTGTGCTCTTGT CCTCTACTTTTGTTCAAGAACTTTATGCATAGAAGAAAATTCCTGATATGTTGTCTCAAAATTCCTGCTTAGACTGATGC TAGAGGCTAGAGGCCAGGAAATTTTGATGTTTTAAAGCTATTTTTTGAAGGAATATAATGATCTAGTCATGAGACAAGTT CAAAACTTCGTTTAATGTTATTTTGGTACTGTTTTAACCCATTTGATGTATAATTCAGTAGCTTTTGACAACAACTTAAC CAAGTTTTCGCAATAACACTCTGTTTTACATACTATAGGGAGAAGCTTACACAACCCTCGTGGGCCATACACAGTGTGTA TCTTCTGTGGTTTGGCCGCAACGAGAGTCAATCTACTCTGCCTCATGGGATCATTCTATTAGGAAATGGGATGTTGAGAC GGGCAAAAACTTGTCAGATATAGTAAGTTGATAAATTGCTGCTCTTGCTCTCTCCTTTGTTAAAATTGTATACTTTTGAA GTTCAATTTCTTTTGGTTTACAAGTTATGCTATATTGCTATGTGACATGTTACCCTTGGGTGCTCTGCCATTGATTTAAA ATTTAAATGGGTGTTAACAGGCAGCGAAGTTGCAACTTGATTAGGGCATGCTGATCATTTTTGTGTTGTTCTTGTACTTA AGATTAAAGATTCTGTTTGCTTTGTTAATCTCTAGTTCTGGCATCTTTGAATTGTGTGGTTCTCTGCCTAAGATTCTGTC TAATATTTTTTTGTATGCTAGTTCTTCAATTTTCCCTCAAATGGTTACTGATTATGATGTTTTTATGTGATAATCATTGC TAATGCTGAGTTTAGGTTTTGTTAAATCTACTTTAATGTTCTTGTCTAAAAAATTATTTTAAGTGCTTACCTGGAGGAAG TGGAACCTTGTTCATGGCAATAATGGTTATCTATTTAGTGTTTTCCAACATTTACTGTTTGAATCTTTTTTCCATACCAA TGTATCATGGAAAATGATATCATATGCGATCAAAAGTAGTCAAGTACCACTATATCAAAAGTTGAAGCTTTCAAATTTTA AGGCTACATTGCTCTCCATGTACAGTTCAGTGGGAAAGTTCTCAACTGCCTTGATGTTGGTGGGGAAGGTTCTGCTCTGA TAGCTGCTGGTGGTTCTGACCCTGTTATTAGGGTTTGGGATCCTCGTAAGCCAGGTCTGTTAAATAAAGCAAATAATTAT TTCCTCTCACTTCCAATGAGAATCACATGCATGCTAGTATCTTATAGTACAATTTCTCTTTTCTTTAGGCACTTCTGGTC CAGTTTTCCAGTTTGCTTCTCATACTTCTTGGGTATCATCTTGCAAGTGGCATGATAATTCTTGGTTTCATTTACTTTCT GCATCTTATGATGGGAAAGTTATGTTATGGGATCTGAGAACTGCGGTAATACTTCTGTCAAGCAATTTTTAATTTTGGTG ATTATACGTCATCTTTGGGTTTTTACCTACTAATTTTCTCCATTGTTGTTGCAGTGGCCTCTCTCAGTCATTGAATCACA CAGCGACAAGGTAAATTTTGTTTCCATGTTTTAGCAGCAAAGAAATAATACCTCTCGAACATCTTTATTTTACACGCTTG AGAAGGGTCAAAATTGCCGTTAATAACATTTCTTTCATTTAACTCAGGTACTATGTGCTGACTGGTGGAAAGGTGACAGT GTTATCAGTGGTGGAGCAGACTCAAAACTTTGCATTTCTTCTGAAATTCCCGTACAGTGACGGAAACTTCAATCATACTA CGTTTATTTTTTGAGGGGGATGGGTTAGGGGCAAATATTTTTATGTAATGGGAACGGATTAAGTTTAAGCCAATTTTGTC CAAGGCACAAATGACAAGTGTTGTATCAGTTATTGTGAACAAAATCTGTAGCCGATGGCTATTGGGGTAAACCCTTAATA TTATGCAAAGCTTGAATTCATTCTATATGCCAATGGCTATTGGTGTGAACCCTTAATACATCTGCTTCAGTTTTATTGAC CTTGCTCTTATTTATTCATTACAAAAGTAGATATATATATGCACTGAAGGCCAATCCTCATTCTTTATGTTCCAGCCACT TAACAAACCTTCTGAGGTTCTCTAAAGATCGACCTCCTTCAGCTATGTCCTTCATTAACCTCCCCTTCAGCTCCAGAGAC CTTGATCTCAATGTCTCATCACTAAGCAGTTGCTCCACTTTCTTTTTTATCTCCCAGCGTGACACTACACCATTTTCATC CGAGTCCATTCCTATACCAACCTTCAACTCATCACAAATAAATGTTTTGTCATAAAGTTGGTCAGCAAAATATGGCCAGC ACAAGAAGGGAACCCCATTAGACAAACCTTCCATGGTAGAATTCCAACCACAATGGCTAACAAAACAAGCTATGGAAGGG TGATTAAGCACTTTTTGCTGAGGTGCCCATTCAACAATCTTGCCTTTGCTCCCCAAAAATTCACTTGGGTATGCCATGTT ATTATCTTGGCGCACAACCCAAAGAAAAGGTCTATTGGTTAGGTCAATTCCATGAGCTAGTTCTTTGAATTGGTTTTGTT CAAAAAGTGTGAAACTACCAAAAGCAAGATACACTACAGATTGATGAGGTTGCTGATCAAGCCAACTCATGCAGGATAGA TCTTCTTTCCAGAATTGTCCCATTGATCTTGATGTTGTTGCATTTGTGTTGTCATGACTTGTACTCAATAATGGGCCAAC TGGTTGGAGCTTTGGAATGAATGATAATGCCCCTGGTTCAAGTTCATATGCAGTGTTGCAAAGCCACCACTCTGTCTGGT GTAATTTTTTTGTGCAGTGGTTTATGTAATTAAATAGTATTTTTAAAATATTTTTTGAGTCATAGAAATTCGACCAAAAC AAGGCTCCTTTGTCCATCACAGGCATTCTTGGTGATATTTGAAATGTTTCTTTAGTGGTTGATAGTCCTGAGTGAGCAAT AAAAATCAAAATAAAATAAGTGGTAATAAAAGACACAGAATTTAGTAGTTGTTTAAAAAATAAAATAAAAAGTGGTGTTG AGAAATGGAAATTAAAGTTAATTATATTATCATAGCAATATAATTAGC
CDS sequence (LotjaGi2g1v0265800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCCGAAGACGGTGGTGAAGTTAGCACCAGGAGGATCCAAGTGCGCTTGGTGACGAAGTTGGATGAACCCTACAAAGT TCCGACCGCCGCCATCGCTATCCCCGCCGACCTCACCAGACTCGGCCTCTCCTCCATTGTCAACGCCCTTCTCCGAAACA AAGACGCTGATCATAATCCTGAACCCTTTGATTTCTTGATTGATGGCGAGTTTGTTCGTATGTCGCTTGAGCAGTTTCTT CTCGCTAAAGGAATTTCCACGGAAAGGACATTGGAAATTGAGTACACAAGGGTTGTAGCCCCACGAAAGGAGGAAGACCC TTCTCTACATGATGACTGGGTCAGTGCTGTTGATGGTTCTTCTTCTCGGTTTTTTTTGACTGGGTGTTATGATGGTTTGG GAAGGGTATGGAAAGGTGCTGGATTATGTTCCCATATATTGGAAGGACATAGCGACGCTGTCTCTTCTGTTTGTATCGTT AATCCAGAAGGTGAGCAAACTGTTACTATAGCTACTGCTTCGAAAGACCGGACACTAAGGCTATGGAAGCTCAATACCAA TGAGGCTGTCAACACTCCTACAAGGGTTAGGGCTTTCAAAATCTTGCGTGGTCACAAATCTTCTGTACAGAGTGTTGCCG TGCAGACTTCTGGAGAAATGGTTTGTTCCGGTTCTTGGGATTGCACCATCAACGTTTGGAAAACTAGTGACATTAATGCA GAAGATGACCTAGTTTCTAAGAAGAGAAAAGTTGAAGGTCAAGTGAAGGACTCTCAATTAGAGGGAGAAGCTTACACAAC CCTCGTGGGCCATACACAGTGTGTATCTTCTGTGGTTTGGCCGCAACGAGAGTCAATCTACTCTGCCTCATGGGATCATT CTATTAGGAAATGGGATGTTGAGACGGGCAAAAACTTGTCAGATATATTCAGTGGGAAAGTTCTCAACTGCCTTGATGTT GGTGGGGAAGGTTCTGCTCTGATAGCTGCTGGTGGTTCTGACCCTGTTATTAGGGTTTGGGATCCTCGTAAGCCAGGCAC TTCTGGTCCAGTTTTCCAGTTTGCTTCTCATACTTCTTGGGTATCATCTTGCAAGTGGCATGATAATTCTTGGTTTCATT TACTTTCTGCATCTTATGATGGGAAAGTTATGTTATGGGATCTGAGAACTGCGTGGCCTCTCTCAGTCATTGAATCACAC AGCGACAAGGTACTATGTGCTGACTGGTGGAAAGGTGACAGTGTTATCAGTGGTGGAGCAGACTCAAAACTTTGCATTTC TTCTGAAATTCCCGTACAGTGA
Protein sequence (LotjaGi2g1v0265800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAEDGGEVSTRRIQVRLVTKLDEPYKVPTAAIAIPADLTRLGLSSIVNALLRNKDADHNPEPFDFLIDGEFVRMSLEQFL LAKGISTERTLEIEYTRVVAPRKEEDPSLHDDWVSAVDGSSSRFFLTGCYDGLGRVWKGAGLCSHILEGHSDAVSSVCIV NPEGEQTVTIATASKDRTLRLWKLNTNEAVNTPTRVRAFKILRGHKSSVQSVAVQTSGEMVCSGSWDCTINVWKTSDINA EDDLVSKKRKVEGQVKDSQLEGEAYTTLVGHTQCVSSVVWPQRESIYSASWDHSIRKWDVETGKNLSDIFSGKVLNCLDV GGEGSALIAAGGSDPVIRVWDPRKPGTSGPVFQFASHTSWVSSCKWHDNSWFHLLSASYDGKVMLWDLRTAWPLSVIESH SDKVLCADWWKGDSVISGGADSKLCISSEIPVQ
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 6 | 428 | 423 | 4.1E-100 | – | |
| PANTHER | 6 | 428 | 423 | 4.1E-100 | – | |
| Hamap | 7 | 431 | 425 | 30.901 | ||
| Pfam | 13 | 80 | 68 | 2.1E-21 | ||
| SMART | 100 | 138 | 39 | 1.4 | ||
| Gene3D | 103 | 432 | 330 | 2.7E-70 | ||
| SUPERFAMILY | 108 | 426 | 319 | 5.49E-51 | ||
| CDD | 110 | 424 | 315 | 5.07943E-49 | – | |
| SMART | 140 | 183 | 44 | 4.3E-4 | ||
| Pfam | 143 | 183 | 41 | 2.2E-5 | ||
| ProSiteProfiles | 147 | 433 | 287 | 29.425 | ||
| ProSiteProfiles | 147 | 192 | 46 | 11.712 | ||
| PRINTS | 170 | 184 | 15 | 2.2E-6 | ||
| SMART | 195 | 234 | 40 | 4.6E-6 | ||
| Pfam | 200 | 234 | 35 | 1.1E-6 | ||
| ProSiteProfiles | 202 | 234 | 33 | 12.346 | ||
| SMART | 261 | 299 | 39 | 0.0014 | ||
| Pfam | 266 | 299 | 34 | 0.026 | ||
| ProSiteProfiles | 268 | 308 | 41 | 10.943 | ||
| PRINTS | 286 | 300 | 15 | 2.2E-6 | ||
| SMART | 302 | 341 | 40 | 1.0 | ||
| Pfam | 311 | 341 | 31 | 0.05 | ||
| SMART | 347 | 387 | 41 | 1.4E-7 | ||
| Pfam | 352 | 387 | 36 | 0.032 | ||
| ProSiteProfiles | 354 | 396 | 43 | 11.277 | ||
| ProSitePatterns | 374 | 388 | 15 | - | ||
| PRINTS | 374 | 388 | 15 | 2.2E-6 | ||
| SMART | 390 | 428 | 39 | 0.97 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Ribosome biogenesis | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. |
Expression pattern of LotjaGi2g1v0265800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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