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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0112800 |
| Transcript ID | LotjaGi5g1v0112800.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | WD repeat-containing protein; TAIR: AT5G52820.1 WD-40 repeat family protein / notchless protein; Swiss-Prot: sp|Q9FLX9|NLE1_ARATH Notchless protein homolog; TrEMBL-Plants: tr|V7C3M9|V7C3M9_PHAVU Uncharacterized protein; Found in the gene: LotjaGi5g1v0112800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:22478949..22484798) extracted from Lotus japonicus Gifu genome v1.2.
ATGCAGACAGAGACGACAGAGGTAGTGATGGAGAATAGGGAGATAATCAACAACGTGATGTGCCTTTTGACTGACCCAGA TGGAAATCCTCTTGGTGCTCCTATTTACCTGCCTCAGAATGCTGGTCCACAACAGCTTCAACAGATTGTCAACAAGCTTC TGAACAATGTAAATCCTTTTTCTATTCTAGCTTTCATTTTACATAAATTGGTTGTTTATTGCTGTTATTTTGAGTATCTA TATTCTCATTTTAGGAGGAGAAATTGCCATATGCTTTCTACATATCGGACGAAGAGCTCCTTGTGCCACTTGAAACATAC TTGCAGAAAAACAAAGGTTAGTAGTCACATTTGGTTTCAACAAAGTTGTTCTTTTTACTTGTTTTTTGATTTTTACTAAT GTTTTTCTTTTTGTTTTCGATGTTAATTGAACATTATTTCAGTCTCGGTGGAGAAGGTATTGCCTATAGTTTGTCAACCT CAAGCTATTTTCCGGATTCGTCCAGTGAATCGCTGTTCGGCAACTATTTCTGGTATGCTAAATCATGTAAACATCAATGT GGTTTGGTTCTTTAAGATCTTAATACTGTGTTATTGTCATGTTCTCTGGAATTCATGTCATTGGGATTGTTTGTAGGTCA CGCGGAAGCTGTTCTGACGGTTGCCTTCAGTCCTGATGGGCGGCAACTGGCAAGTGGTTCTGGTGATACCACCGTTCGAT TTTGGGACATGAACACTCAGACACCATTGTACACATGCACAGGTTTGGCATAGAAATGATAAGTTATTCTTGGAGTTTGC CGAACTTAATTTCTTTATGTTTAATTAAAGCAAAGAACAATTGACTGATGTTTAAGCATCCTACTCTCAGTATAACTGAA GAGATCAATTTAAGTCATGCAGAAACTACAAGCTTGCGTCACTGGGTTGTCCTTGTGATTGTTGTGTTGCTAGAAAGAAA TTCTTGAAAGACTGTGTAGGCTAAATCTATTTCTTTTAAATCTCTATTAACTGTGAGTATGCTACAAGGAAAGGCATGGG ATAGTGTATCAATGCAGGGGGAGTTAGAGGATCAACACAAGGAGGACAAAAAGGGAAACACAGATATTATTACTGTTAAG TCTGGAGCTTAAATGAATGCTTAAGTGGCAAAGAATAGTGGGAGAACTTGGTTGCAAAGAAATGAGAATATTAGGGGGAT GGATATGAAGTGTGAAGGCTGGCAGTTACCGAGTGAGGGTTTGGGGGATTGGGGTGGAAGTTACCAGTCTCTTGAATGTC CTGTGATATCTTTTTTTTTTCTCTTTTAAGGAATTGGTGCCTTGGAGGTCCACCTCTGTTATAATGAGCTAGTCTTCATT GCTCCATAAATAAATATATGTTTCTATCAAGCTCCTATTAGTTTTGCGCACACACTTTTGGATCTTTTATGAGAATATTC CATATATAGCTCCGTACTGTGCATTTATGCAGGACACAAGAATTGGGTCCTCTGTATTGCATGGTCACCAGATGGCAAGC ATCTTGTAAGCGGGAGCAAGGCTGGGGAACTTCAGTGCTGGGACCCACAAACTGGAAAGTCGTCAGGCAATCCACTAACT GTAAGGTCTTTGACCCTGAATACCAATTTGTATTATAAATCATGTTTCATTTTTTTTCCTATGGAGATATTTTAGATGAA CTACAAATTGTTTATTTTATTTTTATCTTTGGGGTACATAGTTGAACTGTTATTTTGGTTATTCAAAGTACTTAATTTCA TAACATGTTGTTTGAAGAGTTGTCAAGTATATCCATTCCATTATAATGTTTGTTGGAGATCAAAAATTGATGTATACTAA ATACAGGGCCACAAGAAATGGATAACTGGTATATCTTGGGAACCTGTCCACCTGAGTTCTCCTTGCCGTCGCTTTGTAAG TGCTAGCAAAGATGGGGATGCCCGTATATGGGATGTCACTTTAAAGAAATGTGTTATATGTCTCACTGGCCACACACTTG CAATAACATGCGTCAAATGGGGTGGAGACGGTGTGATTTATACTGGGTATTCTCTCCATCTTTACTTCTGGTTTCTCTTA AGCTTTAGAATCAGTTTTTCTTTATACCCATTTTTTGATATTGCTTGAATTGGGATATTAGTAAAGTAGCTTTGCTGTAT AGTTGTTTTTCTTCAAGTTCACAAAAGACTCATTTTTTATTTATCCAGTTTTGGTGTCTGTTTTCACAAGCTCAACAATT CTTGGGCACTGATCTTTAGGAATATTATTGCCAAATGCCTCCTTTGGGAAAAACCTCATTGAAGTGAAATTCCCTTTTAG TTATTCTTGATCTCATCTTTCTATCTTCAAGTAGTCCTGATTACTGCTGGTTTGTGGTACGAGTTTTCCCCTTTCGTATT ACAACTTAAAGCCTAACTGTTATTTTATTACAGCTCCCAGGATTGTACAATCAAGGTTTGGGAAACCACACAAGGAAAGC TAATACGTGAACTGAAGGTGAGTGAGTCTCGTCCCTTTGTACAGTTGAATGCTATTTGTGTTGTACCTTCTATTAATTTG CTCTAAACTCGGTTTTATGTACGCGTCCTATTTCTCACCTGGTGCTACCTTTTTCTTCATTTAAGTTTTTGGATATCGTC TTTTAAGTGCCTTTTATGCTACTAATTTGAACTTTCCTATTTCAGTCCTGAAATATTACAACTTACAAGTGTGTTTAATG TTGATTCATTGTTAGAATGTTAGTGTGAAGCTTTTATACTATCATTTAATGTGTCGATACTTGATATATGTTTTAAAAAA GTGACATTCCCAGTTTGATTATAAAACTCTTCGAACGATCATGTGTTACATCAGTAGAAGATAGTGTGAAAAAGGCTTAT ATTAACATTGGATCAGAATTAAATCTCTAGTACTTTGGTTTGTTGTTCATCCATGCTACCTAATCAGACAATTCAGAATC CTGTTTTTCAATTTTTTTATTTTAATAAATAAATTTAATAGGATTATTTTTTTGAAAACATATAAGAAGCTATAAATATT GTTTTTAATGAAACAAAAAATTTCAACTAAGTTGAGGGGTTGGGCAACTTTGTTCCTTCGAGTTTCTCTTATTTCTTGAT TGTTCTGTTTTGTTCTTTTGTTTCCTTATACTCCATAGTCCATTCTACTATTTTCGGTCTCAACGATTTCTTATATTAAA AAAGTATATGTAATGCAGAATAGCAAAAGAAGAGTTCTGTCATGCAGGAAACTGACTGTTCTTTTTATATTTATTTTTGC ATCAGATAACCTTGTATCTGTTGTAAACTTCCTACTGATAACTTTTCTTTTTCTATACTTTTTTTTCCCTTCGTATTTTG GTATTTATTTTAGGGACATGGACATTGGGTTAATTCTTTGGCATTGAGCACTGAGTATGTTCTTCGCACTGGAGCTTTTG ATCATACTGGAAAACAATATTCGTCGCCTGAGGAAATGAAGAAGGTATCTATTAGTATTTTTGATAGTGATGTTAGCCCT TTTAACCGTAGTTATTGGTTACTAAACTGACACAATATTCGTCGCCTAATGAAATGAAGAAGGTATCTATTAGTATTTTT GATAGTGATGTTAGCCTTTTTAACCGTAGTTATTGGTTACTAAACTGACATGCTCTGCCCGGTCAGAATTGTTATCTAAA CCCAGTCTGGGCAGGTTTTTTGAATCCTTGCCTTCATAAAGAAAGGCAAGCTGTAATGCCAGCAGGCAACTTGCTTCTTG CAAGATATTATAAATTTACATTATATTAATATATCCTCATAAAGTTGTAAAGAAAATATAGTTATATTTTACTGTTTTAT CTAGATAAAGATGCTTAAAACATGGTCAATTAACACTAAATGTTCTAAAGCTCTAATATTCTTCCAAATTATTGTTGATA TATTATTTTACGCTTTTAAAAATTTTCACCTCTCCCCAATAATTTCAGAAACTGAATTTCAGTGAGATGTAGTTGAACCC TAGGTAATGTTTTTGTCAAACAACCACTTAATCCCAAAAGCTTAAGCTGTTGGGTATGGGCAACTTTAATGGATTTATAT TATGTTCTAACACGCCCCCTCACGCAAGAGCCCTTTGGGCTTGAAGCGTGGATAAATGCACAGGCCCGCCTACCATGTGC TTAATTAAATTCCACTTTTTAATTAGAAAGTGAGGGGAGCAAGGATCGAACTCTAGACCTCTTGGCCATAGAGGCTCTGA TACCATGTCAAACAACCACTTAATCCCAAAAGCTTAAGTTGTTGGGTAAGGGCCACTTTAATGGATTTATATTATAATCT AACAGTTTTTAATCAAGACAGGCAATTTATGGTGCAGCTGGTTCAAATGGATGGTTTGTTCCCATTTTAAAAAAATTACT TGTTCCATTAATCTATATTTCTATAAAATTATATAACAGAGATATTTAAATTTACTAACATGATTGTTGTTATTTCCATT TATTTATCAGAAGAAAGTATATAGTTCCTTTTGTGCATAGGATTTTAAACTATAAAAAATGTGAGTTCAAATTAAAAAAA CTAAAATAAAATATATTTTTATTGGCTTATTTTTTTGAATCAATAAACAACAACTATGGCATTGAGCTCGATTAAAAAAA TAAGTTATGAGGGATATTATTGATAATTAGATCATCTTTTAATGATATCTTGTCATGTTCTTTTTGGTCTTCCTCTACCC CTCTTCACAAGACTAAAAACCATGTTATCAGATTGTAACTGTTACAAGTTCTTTGTCTAGGATCTTTTTCTTCCATCTGT GTTTTCATAATGAGTTTATGCTGCTCGTCAATGTAGGTTGCTCTTGAAAGGTACCAAAAAATGAGAGGCGATGCCCCTGA AAGATTGGTCTCTGGATCTGATGATTTCACCATGTTCCTTTGGGAGCCCTTTGTCAACAAGCACCCCAAAACTCGTATGA CAGGTCATCAGCAGGTACAAGTTTTTCCCTATATTTTTCTTTATAATTTTAATATTAATATTTCAATTCAATCAGAATAA ACCTGAATGATCTTTTCTTCAAATTGCAATGTGACTTCCGTTTGTACCAGTGTTATTGCTTAATGAAACGGGATTTTAAA GAGTTTTCTGATGTAACACAGCTGCTTGATAATTCCATCTTTTAGGCTTTATGATATAATTAAACTTCTTTGCTCACAGC TTGTAAACCATGTCTATTTTTCACCTGATGGGCAATGGGTGGCAAGTGCATCTTTCGATAAATCTGTGAAGTTATGGAAT GGCACTACGGGGAAATTTGTTGCTGCCTTTCGTGGCCATGTTGGGCCGGTTTACCAGATCAGGTATACACCATAAATCCT TCCATCTTATTTCGAACTATTTCATTTTAGAACTGTAATTAAATATATATTGGCCTTTACTGTGCAGCTGGTCTGCTGAT AGTAGACTTATTCTAAGTGGCAGCAAGGACTCTACACTTAAGGTAAGCGCAATTTTAATTTTCCTTCACGGGAAGATTCA TAAAAATATCATTTTACATATTTGGTTCGTTTGTACGTCCAAAGACATCAAATTTCATTTGCAAAACTGGAACTTTGACC TTTTGTTTGGTTTTCAAGGTTTGGGATATTAGGACTCGCAAGTTGAGGCAAGATCTTCCAGGCCATGCTGATGAAGTATG TCTGTTTATTTACCAAAAGCATGAATAGTTTTTGTTCAAAGTATTCCATCTGGTAGCTAACCTAAGTTTATTTTCTTGTG GGGAAGGTTTTTTCTGTTGATTGGAGTCCTGATGGGGAGAAGGTAGCCTCTGGTGGTAAGGATAAAGTGTTGAAGTTGTG GATGGGCTAG
CDS sequence (LotjaGi5g1v0112800.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGCAGACAGAGACGACAGAGGTAGTGATGGAGAATAGGGAGATAATCAACAACGTGATGTGCCTTTTGACTGACCCAGA TGGAAATCCTCTTGGTGCTCCTATTTACCTGCCTCAGAATGCTGGTCCACAACAGCTTCAACAGATTGTCAACAAGCTTC TGAACAATGTATTGCCTATAGTTTGTCAACCTCAAGCTATTTTCCGGATTCGTCCAGTGAATCGCTGTTCGGCAACTATT TCTGGTCACGCGGAAGCTGTTCTGACGGTTGCCTTCAGTCCTGATGGGCGGCAACTGGCAAGTGGTTCTGGTGATACCAC CGTTCGATTTTGGGACATGAACACTCAGACACCATTGTACACATGCACAGGACACAAGAATTGGGTCCTCTGTATTGCAT GGTCACCAGATGGCAAGCATCTTGTAAGCGGGAGCAAGGCTGGGGAACTTCAGTGCTGGGACCCACAAACTGGAAAGTCG TCAGGCAATCCACTAACTGGCCACAAGAAATGGATAACTGGTATATCTTGGGAACCTGTCCACCTGAGTTCTCCTTGCCG TCGCTTTGTAAGTGCTAGCAAAGATGGGGATGCCCGTATATGGGATGTCACTTTAAAGAAATGTGTTATATGTCTCACTG GCCACACACTTGCAATAACATGCGTCAAATGGGGTGGAGACGGTGTGATTTATACTGGCTCCCAGGATTGTACAATCAAG GTTTGGGAAACCACACAAGGAAAGCTAATACGTGAACTGAAGGGACATGGACATTGGGTTAATTCTTTGGCATTGAGCAC TGAGTATGTTCTTCGCACTGGAGCTTTTGATCATACTGGAAAACAATATTCGTCGCCTGAGGAAATGAAGAAGGTTGCTC TTGAAAGGTACCAAAAAATGAGAGGCGATGCCCCTGAAAGATTGGTCTCTGGATCTGATGATTTCACCATGTTCCTTTGG GAGCCCTTTGTCAACAAGCACCCCAAAACTCGTATGACAGGTCATCAGCAGCTTGTAAACCATGTCTATTTTTCACCTGA TGGGCAATGGGTGGCAAGTGCATCTTTCGATAAATCTGTGAAGTTATGGAATGGCACTACGGGGAAATTTGTTGCTGCCT TTCGTGGCCATGTTGGGCCGGTTTACCAGATCAGCTGGTCTGCTGATAGTAGACTTATTCTAAGTGGCAGCAAGGACTCT ACACTTAAGGTTTGGGATATTAGGACTCGCAAGTTGAGGCAAGATCTTCCAGGCCATGCTGATGAAGTTTTTTCTGTTGA TTGGAGTCCTGATGGGGAGAAGGTAGCCTCTGGTGGTAAGGATAAAGTGTTGAAGTTGTGGATGGGCTAG
Protein sequence (LotjaGi5g1v0112800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MQTETTEVVMENREIINNVMCLLTDPDGNPLGAPIYLPQNAGPQQLQQIVNKLLNNVLPIVCQPQAIFRIRPVNRCSATI SGHAEAVLTVAFSPDGRQLASGSGDTTVRFWDMNTQTPLYTCTGHKNWVLCIAWSPDGKHLVSGSKAGELQCWDPQTGKS SGNPLTGHKKWITGISWEPVHLSSPCRRFVSASKDGDARIWDVTLKKCVICLTGHTLAITCVKWGGDGVIYTGSQDCTIK VWETTQGKLIRELKGHGHWVNSLALSTEYVLRTGAFDHTGKQYSSPEEMKKVALERYQKMRGDAPERLVSGSDDFTMFLW EPFVNKHPKTRMTGHQQLVNHVYFSPDGQWVASASFDKSVKLWNGTTGKFVAAFRGHVGPVYQISWSADSRLILSGSKDS TLKVWDIRTRKLRQDLPGHADEVFSVDWSPDGEKVASGGKDKVLKLWMG
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 11 | 448 | 438 | 1.6E-233 | – | |
| PANTHER | 11 | 448 | 438 | 1.6E-233 | – | |
| Pfam | 22 | 55 | 34 | 1.9E-5 | ||
| SMART | 73 | 112 | 40 | 1.8E-11 | ||
| Pfam | 75 | 112 | 38 | 1.3E-8 | ||
| Gene3D | 76 | 449 | 374 | 9.0E-147 | ||
| CDD | 76 | 447 | 372 | 8.05008E-84 | – | |
| ProSiteProfiles | 80 | 449 | 370 | 75.745 | ||
| ProSiteProfiles | 80 | 121 | 42 | 18.529 | ||
| SUPERFAMILY | 82 | 447 | 366 | 1.78E-86 | ||
| PRINTS | 99 | 113 | 15 | 2.2E-8 | ||
| ProSitePatterns | 99 | 113 | 15 | - | ||
| SMART | 115 | 154 | 40 | 2.8E-11 | ||
| Pfam | 117 | 154 | 38 | 5.7E-7 | ||
| ProSiteProfiles | 122 | 163 | 42 | 12.981 | ||
| SMART | 158 | 202 | 45 | 0.0055 | ||
| Pfam | 164 | 202 | 39 | 5.2E-4 | ||
| ProSiteProfiles | 165 | 203 | 39 | 10.609 | ||
| SMART | 205 | 243 | 39 | 7.9E-9 | ||
| Pfam | 207 | 242 | 36 | 6.6E-6 | ||
| ProSiteProfiles | 212 | 252 | 41 | 12.747 | ||
| PRINTS | 230 | 244 | 15 | 2.2E-8 | ||
| ProSitePatterns | 230 | 244 | 15 | - | ||
| SMART | 246 | 321 | 76 | 0.0037 | ||
| Pfam | 247 | 320 | 74 | 0.08 | ||
| SMART | 325 | 364 | 40 | 5.0E-9 | ||
| Pfam | 332 | 364 | 33 | 1.8E-8 | ||
| ProSiteProfiles | 332 | 373 | 42 | 15.254 | ||
| ProSitePatterns | 351 | 365 | 15 | - | ||
| SMART | 367 | 406 | 40 | 8.9E-11 | ||
| Pfam | 369 | 406 | 38 | 6.1E-8 | ||
| PRINTS | 374 | 390 | 17 | 1.9E-7 | ||
| ProSiteProfiles | 374 | 415 | 42 | 17.058 | ||
| PRINTS | 393 | 407 | 15 | 2.2E-8 | ||
| ProSitePatterns | 393 | 407 | 15 | - | ||
| PRINTS | 393 | 407 | 15 | 1.9E-7 | ||
| SMART | 409 | 448 | 40 | 3.5E-9 | ||
| Pfam | 414 | 447 | 34 | 5.2E-7 | ||
| ProSiteProfiles | 416 | 449 | 34 | 15.287 | ||
| PRINTS | 430 | 447 | 18 | 1.9E-7 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). |
Expression pattern of LotjaGi5g1v0112800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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