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| Field | Value |
|---|---|
| Gene ID | Lj2g3v1079640 |
| Transcript ID | Lj2g3v1079640.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ribosome biogenesis protein WDR12 homolog [Glycine max] gi|356551165|ref|XP_003543948.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 431 | 431 | 4.90E-183 | – | |
| Hamap | 7 | 431 | 425 | 30.886 | ||
| Pfam | 13 | 80 | 68 | 2.10E-21 | ||
| SMART | 100 | 138 | 39 | 1.4 | ||
| SUPERFAMILY | 108 | 426 | 319 | 7.33E-51 | ||
| Gene3D | 109 | 426 | 318 | 2.90E-56 | ||
| CDD | 110 | 424 | 315 | 2.72E-48 | – | |
| SMART | 140 | 183 | 44 | 4.30E-04 | ||
| Pfam | 143 | 183 | 41 | 2.00E-05 | ||
| ProSiteProfiles | 147 | 433 | 287 | 29.425 | ||
| ProSiteProfiles | 147 | 192 | 46 | 11.712 | ||
| PRINTS | 170 | 184 | 15 | 2.20E-06 | ||
| SMART | 195 | 234 | 40 | 4.60E-06 | ||
| Pfam | 200 | 234 | 35 | 1.00E-06 | ||
| ProSiteProfiles | 202 | 234 | 33 | 12.346 | ||
| SMART | 261 | 299 | 39 | 0.0014 | ||
| Pfam | 266 | 299 | 34 | 0.024 | ||
| ProSiteProfiles | 268 | 308 | 41 | 10.943 | ||
| PRINTS | 286 | 300 | 15 | 2.20E-06 | ||
| SMART | 302 | 341 | 40 | 1.4 | ||
| Pfam | 314 | 341 | 28 | 0.059 | ||
| SMART | 347 | 387 | 41 | 1.40E-07 | ||
| Pfam | 352 | 387 | 36 | 0.029 | ||
| ProSiteProfiles | 354 | 396 | 43 | 11.277 | ||
| ProSitePatterns | 374 | 388 | 15 | – | ||
| PRINTS | 374 | 388 | 15 | 2.20E-06 | ||
| SMART | 390 | 428 | 39 | 0.97 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Protein binding | Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules). | ||
| Biological process | Ribosome biogenesis | A cellular process that results in the biosynthesis of constituent macromolecules, assembly, and arrangement of constituent parts of ribosome subunits; includes transport to the sites of protein synthesis. |
Expression pattern of Lj2g3v1079640.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj2g3v1079640.1, powered by CORGI.
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