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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0065500 |
Transcript ID | LotjaGi1g1v0065500.4 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | 50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp|C3PL27|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr|B0BLA7|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0065500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:9067928..9073455) extracted from Lotus japonicus Gifu genome v1.2.
TATTAAAAGTTAGAGAATTCACTAAGACAAGTTGACTCAGTTGGTAAGGACAAAACACTTTCTCTCATAAGGTTGTGTGT TCGATTTCCGTTACTGATGTGAGAGGGCTATGTTGGTAGGTGAGTTGTAAAGAGATTAATTTCTATGCACCGACGGTGTA AAAAGTTTTACACCATCATTCAATCACAACCTTCCATTTTTCTATTTTAGATATTATTAAATTCAAAATTAATTGTGAGC TAACAAAATGGAGGGATATGATTGAATGATGGTGTAAAACTTATTTACACCGTCGGTGCATAGAAATTAATCTCATTTGT AAATACCTCTATAAGCGACATATGATCCTAAAAATTTGCCCTGAAAGATGGTAATAATAGGAGACGAACCCACACAAAGA GAGTTCACAAACATATTCTTAGCCGCCACAACCCACAAACATTTAATCAAAGCCAAAATACCCACATATCCCATGTGAAC TCACTATAACAATATTTTTAATTTGTGGCCATGAGTTTAGATTAATCAACCTAACTTTGTCAAATCCAAATGCCCAATCC AATCTGAAATTGAATTTTTTTTTTTTTAAATGTTGAAAATTCTATTTATCCAGGTTAAAATCCAGTGATAGCAAAAGAAA CCTCCATTTTTAGAATCGGGTCAAACATTTTATGAGAGTCCAAAACCACAAACCCGGCCCAAATGATTATCATTTCCTTG AAGCCCAAAACTGTGATTGACAAAAAAAAACCAAAACGGTGCGTTTTGAAGACTCTTTCGTTCTTCTCATCTCTTTAATT CTCACACTGTTTCTTCCAGAGTCTCAATCTCAATTGTGCTCTTCCGCGCTGCCACTGTGACCCTTCACCTTGTTCTTCCC AAATTCAGGTGAGTTTCTTCACAATCAAAGGTTCAATTTTCAATGACCACTTCTTCTTCATCCTCTTTTCTCACACATTG TTTTAGGTGATTTGGGAAATGGGAATCAGGGTTTGTAGATGCTGGGGATTGGTTTGGCCAATAAATTTTGAATCTTTCTT CATTTGGGTGTTTGGAACTTGCAATGATTTTGGTTATTAATCTTAAACTGATTGTATTTCAAATTTACACCAAAAACAGC AAAATGGAAGTGACTCTTTGTCTGATCAAGTTGAAGGTATGAATGCATTCAAGGCATACCAAGCATGTGTCCCAATTGCT TGGAGCCCAAATCTCTATATAACTCTGGTGAGGGGCATTCCAGGGACCAGGAGGCTCCACAGACGCACTTTGGAAGCACT ACGCCTGGGAAAATGCAATCGAACTGTCATGCGATGGAACACGCCTACTGTTAGGGGAATGCTCCAACAGGTTCTAATAC AAGCTCTACTACACATGTCCCTTTTCTGCTGGAAATTAATGGTCTTTCTGTACAGTAACATTGCAAAACTTGGTAATTTG TGCAGGTCAAGAGGCTAGTTGTCATTGAGACAGAGGAGATGTACAAGGCCCGCAAACAGAAGGAGGAAGCCCACCGAGCT CTGCGTCCTCCATTGGTCATAAATCATCAACCGTCTTTGGCTACTGGTACCTTATAATAGCCTGCTGTTGTCTTAAAGAT TATGTCTTCTTGCTACTGAACCTATCAAGGGCTGAAGTTAGCGACTTTGGCCTCAAATGGATAAATTCTTGCTTTGAAGA TCATGCTTTAGTTTGAATTTATAATTTTGTAGTCTTTTCAACTTATATTCGTTAGTCAAATTTTGGCCTTTGTTTATGAA AACAGGCTATTTAGGAGTTTCTTTATTTATATTTAGAGTTGGGGAATCGATGTTCTCCAAATGCTTATTTCTTTTGGAAA CAACTTACAATCTAGTTTGCATTTATATATCTGTCATTACTTAATAATACATAATACATGCTTTTAATAATAAAAGAAGG TTCTGCTAGTCACCCAAAGTTAACATCCCCGGGGCATGATATTTGCTTCTTGCACACCAATGTAGGGCCAAATAGAATTA GATTTTTATTTGAAGACTATACTCTATGCTTCTTCCTTTCCATCAACACCAATTTTGACCTCATTTGCAATCACAAGCAC TTTATCTACATTGTCTTCAGGCTCTATGTTGTGCTGAACTTTGTAATGATGCCTCATTGCCAAGACAATAAAGAGTATAA AATTCAGTACTCCCAGCACAGCTAGCAGCCAATAGAAGTAATCTAACCTTCCCTTGTTCAGATTGCTCTTGAGCCACTTT TTCTTACTCAATTTGTCCACAATTGACACCAATAAGCTACTGACAAAATACCCCATTGAAATTGCAGTTAGGAAAAGTCC AGTGCTCATAGATTTCATTCCCTCTGGTGCCTCCCTGATGAAAAATTCTAGCTGTCCAACATAGGCAAATGCTTGCCCGG TACCCACTAGAAAAAGCTGAGGTACCAGCCAAAAAGCACTTATTGTAGTGTGATTTTTGACTGCATTATCCCTTCTTTCT TTCTCAGCAATTGCTGCAACCACCATTGCAACAGTAGCGCAAACAAGTCCAATTCCAATCCTCTGAAGACTTGTGAGCCC GTGTATATTGTGAGTGAATTTCCGAGCCAATGGCACTGTGAGTTTCTCATTTAGGGAAGTAAGGAGGAGAATGGTAATGA TGACAAAAGCTGGTAGTGATCCTGCTGGGACATCTAGAGATCCAACTTTTCTGTTCATGAGTTTAGCTTGCTGAATGATG AAGGTACTCACTTGAGAATAAACTGTCCAAAAGAAGATACATGTAGACCAAATGGGAAAGAGCATGATAACCATTTTAAC CTCCTCAACCTGAGTTACAGTGGAAACCATGCATGTGTTTTCCTTGTTTCCATCCTTTGAACTGTTCTCATTAAGGAATG CAGCTTTATCAAGGAACCTATCTGACAAAATGCAGTGCAGTGAAAACAATTACGAACTAACATGAAATCATCGAGATTTC GACAATGAAATCACTGTTAGAACAATAAAACATAATGTTTTATAATTGTGTGCAATAATTGAAGAGTTATATAGTGAGTG TTTGGATACCAGCTGAGTGTAACGTGAACAGACTTTCATCCCAATCCATAAGGAGAGTTACGTTCACTTTTGGTCTTGAA GGGAGTGCTAACCTCCGTTTGCACTGGTACCAACGGGTATCCAAACATAGTCATAATTGTGCTTACTTAATCCTATTCAA TGCATTAAGAGGAATATAGTTTACCTTAACTTCTCTGTATGTCGGATTCTAGCTTCAAAGTAACCATTGAGAAAGGAAGG TTGTGAAGGAATAGGAAGATTCCTCTTCTTCCAAGCCAAGATTAATACCTTCCATATAAGTGTTAAAGGGCTCCCTTGTG GTCTCTTATATCGATACAACGGTTTACCATAGAGTAAAAAAGCAAGTGAAACCAACATTATTCCTGCTGGAATTCCAAAT CCCCACCCTCTTCCTATGTTGTCTTGCACATACACCAACACTAGCACAGAAAATAAGGAACCAGTACTGACAAAGAAATA GAACCTATTGAAGAAAAAGACCATCTTCTTCTCTTCCCGGGGGTCTGTTGTATCAAACTGATCTGATCCAAAACCAGAGA CACTGGATTTTATTCCTCCAGCACCCACAGCTATGGTATACAGGGCTACCAATAGTAGAGCCACTTGTTTGCCACTGGCC TCAATGCATTCATGGTGTTGTCTTTGGACACTACTGCATGGAGGGGCCTTCATGCTTGGAATGGTCGTAGCCCCAGTTAA CAAACACATTCCCTGGTGCAAAAGTGTTAGTACTTGGTATTTCTAAGTGTAGATGATAAATTTTGCATAGCGTAAGAATA GGTTAAATAAGTATCATAAATATAAATATCTTATATATTTATTGCCTTAAGACTTTTAATTAAGCGGTGGTGTGTAATTT TTGTTCGTCAACGGTGATCAGATTAAACCCATGAGTGGTCAAACGACACTTACATCAAACAAACGGGAAGATAAATCCCA TGTAAGAGCCATGCTACAATGGTTCAGATATTAAGCACTATTGTACAAGACATGCTTACTCACAAATCCATAACGAACAC AACAAACAAAAACAAAAGTATAACTAGATCCCACACATTCACTAAAAAATATAAGTAGATCACTCACCTAAAAACTTGAA CTTACCACTGCTGAAATGGTTGCTGATATAGCAATAGTGAGGTATCTGCCTAGTTTGACATCAGCTAGGAAGCCACCAAG AAGGCTAACCAGGTTCATAGTTCCCAAGCAATTGGTAACTATGGTGGCAGAATAAGCTGTTGGGAGGTTTAAAACTCCAA CCAAGTAGGTCACTATGTTCATGGATATGCCCAAAACCATTATTTTTTGAGCCAGCTCAACACCTGCATGAAAAAATATG GGTTTTGTTAAAGGGGCGTGTAGCATAAATGCTATAGATTTCAATAAGGACTTTTTATATCTTAATTCATTTAGCTTCTA CTTGCTACCATATGCCAAAGTGTATATGGATGTCCTAAGTTCAACCTTGAGAACGTGACAATCATTTCTAAGGATTAATG TCTGGATACAAGTTAAACTCATAGTGAGAGTACTTTTTTTTTGTCAATCCATAAAGAGAGTTTCATTTTCCTTAGTGCAT TGGAAGGATTGAAATGTGTTTTATGAGTTCAACCAACTGATATCCAAACATGGTCTTAAGAGTCTCTTTGGATAACCATT AGATCCTGTTATCGTGCATTCCAATGTTAAATTAACGAAAAAAACAAAAAAAATTGATACGGAAACTTGAAAGCAACCTA ATAGCTTCATTAACTTAAATCACATTTACTTTTGATGCAACTATAAAACATGGCCTAAGAAAAAACCTAAGATGAGCCAT GCTGCAGTCCATCCCCCAGTTTTTGATTTGTCAGGCGGGCGACCTAGATAATCCACGGCGGCAGCAATGTCTTCAGCACC TTTTTTCTCACCATGGCTTGCAACTTGAACCTGTAAAATTGAGGTTACAGAAAAACAACAACAAAACCATTGAAACATTA ACAATGTTTTTAATCTTTGAACAACTTCAAAAGTTCATGAAGATGAATGAAGTTTATACCATGTTTTCTGTGTTGCAGCC GGAAATGGATTAACTTAAAAGTTCAAAATGACTTGTACCATTGCCCAAAACACCTTATATTAAGCTTTTTTTACAAACCC CTTGCTCTTTCTTAAGTGTAAGCATCGACTTGTAATAATGAATAATAAAGATGTAAAATGTATTTTCTGTCTTTTTTGTT GAATAGTAATGACCTTATAATTTATTAATATTGATTTTTTTTATATATAATTATTCCAAAACTCTATGAAATGTTTAAAA TTTTATTCCATGAAACATGCAACCATTTTTTGTTTTTGTTTTTTTTTTCCTTTTTAAGATCTTGCATTTAAAATTCACTC AAGACTCTAAGCTAGATGAATTACACAGAGGAATAAAACTAAATCAGCATCTAAGAAAATAGAGAGATTGATGGATACAA CTCTTATT
CDS sequence (LotjaGi1g1v0065500.4) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGCATTCAAGGCATACCAAGCATGTGTCCCAATTGCTTGGAGCCCAAATCTCTATATAACTCTGGTGAGGGGCAT TCCAGGGACCAGGAGGCTCCACAGACGCACTTTGGAAGCACTACGCCTGGGAAAATGCAATCGAACTGTCATGCGATGGA ACACGCCTACTGTTAGGGGAATGCTCCAACAGGTCAAGAGGCTAGTTGTCATTGAGACAGAGGAGATGTACAAGGCCCGC AAACAGAAGGAGGAAGCCCACCGAGCTCTGCGTCCTCCATTGGTCATAAATCATCAACCGTCTTTGGCTACTGGTACCTT ATAA
Protein sequence (LotjaGi1g1v0065500.4) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNAFKAYQACVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMYKAR KQKEEAHRALRPPLVINHQPSLATGTL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 99 | 99 | 2.8E-47 | ||
Hamap | 16 | 73 | 58 | 14.346 | ||
Gene3D | 17 | 73 | 57 | 9.5E-18 | ||
SUPERFAMILY | 18 | 72 | 55 | 1.09E-15 | ||
TIGRFAM | 19 | 72 | 54 | 5.2E-18 | ||
CDD | 19 | 72 | 54 | 1.59414E-16 | ||
Pfam | 20 | 69 | 50 | 2.1E-16 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. | ||
Cellular component | Large ribosomal subunit | The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). |
Expression pattern of LotjaGi1g1v0065500.4, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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