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Field | Value |
---|---|
Gene ID | LotjaGi1g1v0065500 |
Transcript ID | LotjaGi1g1v0065500.1 |
Related isoforms 3 | |
Lotus japonicus genome version | Gifu v1.2 |
Description | 50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp|C3PL27|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr|B0BLA7|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0065500 |
Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:9050538..9056133) extracted from Lotus japonicus Gifu genome v1.2.
ATAGCAAAAGAAACCTCCATTTTTAGAATCGGGTCAAACATTTTATGAGAGTCCAAAACCACAAACCCGGCCCAAATGAT TATCATTTCCTTGAAGCCCAAAACTGTGATTGACAAAAAAAAACCAAAACGGTGCGTTTTGAAGACTCTTTCGTTCTTCT CATCTCTTTAATTCTCACACTGTTTCTTCCAGAGTCTCAATCTCAATTGTGCTCTTCCGCGCTGCCACTGTGACCCTTCA CCTTGTTCTTCCCAAATTCAGGTGAGTTTCTTCACAATCAAAGGTTCAATTTTCAATGACCACTTCTTCTTCATCCTCTT TTCTCACACATTGTTTTAGGTGATTTGGGAAATGGGAATCAGGGTTTGTAGATGCTGGGGATTGGTTTGGCCAATAAATT TTGAATCTTTTTTCATTTGGGTGTTTGGAACTTGCAATGATTTTGGTTATTAATCTTAAACTGATTGTATTTCAAATTTA CACCAAAAACAGCAAAATGGAAGTGACTCTTTGTCTGATCAGTAGTTAATTTAGTGTATCATTATGAGCTAGTTTGAGTT GATATCAGAATTTGGGGATTTTGTTTACATCTTGCTGATTGTTTTCCCACTCTTTTGATAGTTGTGTGATGACCTTTCTT CTTTGTTTTAGTATTTGTTTTGTGTGAAGATTATGGGAAGGCCTCTATAATCATTAGCATTGTATATTATTTAGTGTATC ATGTTTGATGAATGAAGTTTCTTGACCTTAAAAATCCTTGATTACCAAATTATTTATCTGTTCGGGTTTTTGCATCATAA GCAAGGTGGTTATGGTTATGGATGCTAATTTTTCATTCACAATTTTATTTTCATATATCTTAGTAACGGTTTAAGCAGTC GCTTCAATGTGAGTTCTGGTATATAAGCTAGTATTTTTTCCAAAATCCAAATGTGTTCCTTAAAATTTTTATTCTGTTTG CATCTAGTAAAAAACTGAAGTTAGATGGAATATTATAATATTGATTCTTTTCCCATCTAAACTGATTGCCTTCAAATTTT AGTTGATACATATAATTGCAAAATATGGCTATCTGGTGAGGGAGTAAAAAACTATACTATCGGATTTATTCTTAATGCTG TTCTGTTTTCAAGTTGAAGGTATGAATGCATTCAAGGCATACCAAGCATGTGTCCCAATTGCTTGGAGCCCAAATCTCTA TATAACTCTGGTGAGGGGCATTCCAGGGACCAGGAGGCTCCACAGACGCACTTTGGAAGCACTACGCCTGGGAAAATGCA ATCGAACTGTCATGCGATGGAACACGCCTACTGTTAGGGGAATGCTCCAACAGGTTCTAATACAAGCTCTACTACACATG TCCCTTTTCTGCTGGAAATTAATGGTCTTTCTGTACAGTAACATTGCAAAACTTGGTAATTTGTGCAGGTCAAGAGGCTA GTTGTCATTGAGACAGAGGAGATGTACAAGGCCCGCAAACAGAAGGAGGAAGCCCACCGAGCTCTGCGTCCTCCATTGGT CATAAATCATCAACCGTCTTCGGCTACTGGTACCTTATAATAGCCTGCTGTTGTCTTAAAGATTATGTCTTCTTGATACT GAAACTATCAAGGGCTGAAGTTAGCGACTTTGGCCTCAAATGGATAAATTCTTGCTTTGAAGATCATGCTTTAGTTTGAA TTTATAATTTTGTAGTCTTTTCAACTTATATTCGTTAGTCAAATTTAGGCCTTTGTTTATGAAAGCAGGCTATTTAGGAG TTTCTTTATTTATATTTAAAGTTGGGGAATCGATGTTCTCCAAATGCTTATTTCTTTTGGAAACAACTTACAATCTAGTT TGCATTTATATATCTGTCATTACTTAATAATACATAATAATTGCTTTTAATAATAAAAGAAGGTTCTGCTAGTCACCCAA AGTTAACATCCCCGGGGCATGATATTTGCTTCTTGCACACCAATGTAGGGCCAAATAGAATTAGATTTTTATTTGAAGAC TATACTCTATGCTTCTTCCTTTCCATCAACACCAATTTTGACCTCATTTGCAATCACAAGCTCTTTATCTACATTGTCTT CAGGCTCTATGTTGTGCTGAACTTTGTAATGATGTCTCATTGCCAAGACAATAAAGAGTATAAAATTCAGTACTCCCAGC ACAGCTAGCAGCCAATAGAAGTAATCTAACCTTCCCTTGTTCAGATTGCTCTTGAGCCACTTTTTCTTACTCAATTTGTC CACAATTGACACCAATAAGCTACTGACAAAATACCCCATTGAAATTGCAGTTAGGAAAAGTCCAGTGCTCATAGATTTCA TTCCCTCTGGTGCCTCCCTGATGAAAAATTCTAGCTGTCCAACATAGGCAAATGCTTGCCCGGTACCCACTAGAAAATGC TGAGGTACCAGCCAAAAAGCACTTATTATAGTGTGATTTTTTACTGCATTATCCCTTCTTTCTTTCTCAGCAATTGCTGC AACCACCATTGCAACAGTAGCGCAAACAAGTCCAATTCCAATCCTCTGAAGACTTGTGAGCCCGTGTATATTGTGAGTGA ATTTCCAAGCCAATGGCACTGTGAGTTTCTCATTTAGGGAAGTAAGGAGGAGAATGGTAATGATGACAAAAGCTGGTAGT GATCCTGATGGGACATCTAGAGATCCAACTTTTCTGTTCATGAGTTTAGCTTGCTGAATGATGAAGGAGCTAACTGCAGA GGAGCTGCCTAATGAGCTGCCTCCCATGCGCGATATCCAGCACCAAATAGACCTGATTCCAGGTGCTGTCCTGCCAAACC TTCCCCATTACCGATGAGTCCCAAGGAGAATGAGATCTTGAGGGAGCAGATTGAAGATTTGTTGAAGAAAGGCTTTATTC GTGCCAGCATGAGCCCATGTGTTGTACCTGTGCTCCTTGTCCCTAAGAAAGGAGGCCAGTGGCGAATGTGTGTGGATAGT AGAGCCATCAACAAGATCACCATCAAGTATCGCTTCCCAATCCCCCGCTTGGAAGACATGCTTGATGAGCTGGCTGGTTC TAAGGTGTTTACCAAAATAGATCTGCGCAGTGGTTACCATCATATCAGAATCAGACCTGGAGATGAGTGGAAGACAGCTT TCAAGAGCAAAGATGGTCTTTATGAATGGCTGGTGATGCCTTTCGGGTTGTCAAACGCCCCTAGCACTTTTATGCGGCTG ATGAACCAGGTTCTTCGTCCCTTGATTGGTTCTTTCGTTGTAGTTTATTTTGATAATATTCTGATTTACAGTAAAACAAA GAAAGAGCATTTAGAGCATGTGAAGCAGGTTTTGCAAGTCTTACAGGAGAACCAGCTGTACATTAATCTAAAAAAATGTA TGTTCAGCAGCGACAAATTGCTTTTTCTAGGCTTCATTGTTGGAGCTGAGGGGATCCATGTTGATGAAGAGAAAATTTGT GCAATCAGAGATTGGCCCACACCCAAGTCAGTGACTGAAGTCCGCAACTTTCATGGATTGGCTACCTTCTACAGGAGGTT CATCAGAGATTTCAGCACCATCACTGCCCCTATCACTGAATATTTGAAGAAAGGAAAGTTTCATTGGGGTTATGAGTAAG AGCAGAGTTTTATTCGAATCAAGGAGAAGTTAAATCGCAGTTCTACTGCTCATCCGCGGACTGATGGCCAAACTGAAGTC ACCAACAGGACCTTGGGGAATATGATTCGGAGCATATGTGGTGATAAGCCAAAACAGTGGGATGTGGCACTTTCTCAGGT GGAGTTCGCTTATAACAATGATGTACACTCAGCTATCGGAAGGTCCCCTTTTTCTGTAATTTATACTGCTGTTCCAAGGC ATGTGGCGGATTTACTAAAGCTTCCTAAGGCACTAGGCGTTAGTGCATCAGCCGAGACCATGGCCAAGGAGGTTGTTGCT GTTAAGGAATCTGTGAAGGCTAGCATAGAGGCTGCTGGGAAGAGGAACAAGGTTGCTGCTGATAAACACCGGAGGGCTGA GGTCTTCAATGAGGGAGATGATGTTATGGTGTTTTTGCGCAAGGAGCGGTTCCCAGTAGGTACTTACAACAAGCTGCAGG CGCGCAAGTGCGGGCCATTCAAGGTGACTTGGAAGATCAATGATAATGCTTATGTGGTGGATCTCCCGGATCATATGAAT ATCTCTAAAACTTTCAATGTGGCTGATATTCACGAGTACCAGGCAGACAAGGCTCTTTATCAAGAAGATAACTCGGGGTC GAGTTCTTTACAGGTGGAGGAGACTGACGCAGACAGGCTTGCTGCGCGTTTTGATGAAGATGTTGCGCGTGTTTCCGTCT GATGCAGGAGCAATTAATTAGGAAGTTATTATTTTTAGTATTTCGAAATAAATTTAGGATTTATGTTTTTTAATTAAGTT AGAATATTTATGATCTTACTTATTTTTTGTTAGGAACTTATTTATTTTCAATTAGGATCTTTTATTTTTAATTAGGATCT TTTAGGATATTATTTATTTTTCTGTTAGGATATTTTCTTTTCCTATTTAAGCACTTGTAAGGCATAGCCCATTTCAAATT ATTATTGACAATCAAAAAACGAAAATTTTCTCAAATCCTGGTGGATTCCGGTTTTCTGTTACTTAGGGTTTTGTGTTTGC AAACCCTTGTGCGTTCCGTTGTGTCAATGATAGATCATGTACTGCTACAATCGATGATTCAATTTCAATAGAATTCAGTT CATCCACTATCAAAGCGTGTGCTTATTTTAAAAAGAAAAAATAAATCATATGTAGCGTAAAGACTACAAAATCTGACATT AAGATCCATCATGTTCTTCAAATCGCAAAAAGACTACAAGATATATAGGCTACAAAGCAGTCATTTAACAATAATTTTCT GCTACTACAAAGTCATTTAAAATGAACCACACAGTTTGCAGACTTCTTTGGGCACAAGGACCGTTGATCAAATATATAAT GCTTCTCCATTGGACGCAAAGAAGAAATACCGCAGATTGTCATGGTTTGTAAAGATGATGAATTCTGCATAATGTATTCT GCAAACCGCTTCTCATTTTCCTGTCCAGTATAATGTGTGAGGGTGCACTTTCTAAATTGTGAAGAAAGGCAATGAGGAAC AGCATCTGGAAAATTGAAAACCTCATCACCAAAAGAAATTCCAAACAACAGAACATCATCAAGTAATCTGTTCTTTTGTC CGAGCTTATCAACTACAAGATCTTGAAGCTTGGGGCTTTTCTTGAGGAAGTCGAATACCAAAGGCCAAGAAATAGTTCTC GTTGGCAAGATAAGCTCCAAGTGAGTTAAATTGGGAAATGCTGGAACTTTCTCATTACCGCGCTGCAATGGTTACAAGAC AAATTATTAGAAAATTGAAAACAGTTTTATAAAACTGTACATAATCATACGGATCCTTAATAATTTTCAAACATTCAAAC CTTCTCTACTCGAAGAAACTCCACATTGGCTAAAACTATGAGGGGAATATTAGGATTACACGTTGCAGAGATACTTGCGC TCACCAACTTAGGTAAGCTTGTATACTCAGCCTCAGATAAACCACCACACTCAAAACATATATCATGTGCTTCCAA
CDS sequence (LotjaGi1g1v0065500.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGCATTCAAGGCATACCAAGCATGTGTCCCAATTGCTTGGAGCCCAAATCTCTATATAACTCTGGTGAGGGGCAT TCCAGGGACCAGGAGGCTCCACAGACGCACTTTGGAAGCACTACGCCTGGGAAAATGCAATCGAACTGTCATGCGATGGA ACACGCCTACTGTTAGGGGAATGCTCCAACAGGTCAAGAGGCTAGTTGTCATTGAGACAGAGGAGATGTACAAGGCCCGC AAACAGAAGGAGGAAGCCCACCGAGCTCTGCGTCCTCCATTGGTCATAAATCATCAACCGTCTTCGGCTACTGGTACCTT ATAA
Protein sequence (LotjaGi1g1v0065500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNAFKAYQACVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMYKAR KQKEEAHRALRPPLVINHQPSSATGTL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
---|---|---|---|---|---|---|
PANTHER | 1 | 99 | 99 | 1.8E-47 | ||
Hamap | 16 | 73 | 58 | 14.346 | ||
Gene3D | 17 | 73 | 57 | 9.5E-18 | ||
SUPERFAMILY | 18 | 72 | 55 | 1.09E-15 | ||
TIGRFAM | 19 | 72 | 54 | 5.2E-18 | ||
CDD | 19 | 72 | 54 | 1.33887E-16 | ||
Pfam | 20 | 69 | 50 | 2.1E-16 | ||
MobiDBLite | 82 | 107 | 26 | - | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
GO term | Namespace | Name | Definition | Relationships |
---|---|---|---|---|
Molecular function | Structural constituent of ribosome | The action of a molecule that contributes to the structural integrity of the ribosome. | ||
Biological process | Translation | The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome. | ||
Cellular component | Large ribosomal subunit | The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site). |
Expression pattern of LotjaGi1g1v0065500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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