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LotjaGi1g1v0065300.1

Overview

Field Value
Gene ID LotjaGi1g1v0065300
Transcript ID LotjaGi1g1v0065300.1
Related isoforms 2
Lotus japonicus genome version Gifu v1.2
Description 50S ribosomal protein L30; TAIR: AT5G55140.1 ribosomal protein L30 family protein; Swiss-Prot: sp|C3PL27|RL30_CORA7 50S ribosomal protein L30; TrEMBL-Plants: tr|B0BLA7|B0BLA7_LOTJA CM0545.370.nc protein; Found in the gene: LotjaGi1g1v0065300
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr1:9018234..9023727) extracted from Lotus japonicus Gifu genome v1.2.

CAAAAATTAAAAAAGACCAAAACGGTGCGTTTTGAAGACTTGTTCGTTCTTCTCATCTCTGCAATTCTCACACTGTTTCT TCCAGAGTCTCAATCTCAATTGTGCTCTTCCGCGCTGCCACTGTGACCCTTCACCGTGTTCTTCCCAAATTCAGGTGAGT TTCTTCACAATCAAAGGTTCAATTTTCAATGACCACTTCTTCTTCATCCTCTTTTCTCACACATTGTTTTAGGTGATTTG GGAAATGGGAATCAGGGTTTGTAGATGCTGGGGATTGGTTTGGCCAATAAATTTTGAATCTTTTTTCATTTGGGTGTTTG GAACTTGCAATGATTTTGGTTATTAATCTTAAACTGATTGTATTACAAATTTACTCCAAAAATAGCAAAATGGAAGTGCC TCTTTGTCTGATCAGCAGTTAATTTAGTGTATCATTATGAGCTAGTTTGAGTTGATATCAGAATTTGGGGATTTTGTTTA CATCTTGCTGATTGTTTTCCCACTCTTTTGATAGTTGTGTGATGACCTTTCTTCTTTGTTTTAGTATTTGTTTTGTGTGA AGATTATGGGAAGGCCTCTATAATCATTAGCATTGTATATTATTTAGTGTATCATGTTTGATGAATGAAGTTTCTTGACC TTAAAAATCCTTGATTACCAAATTATTTATCTGTTCGGGTTTTTGCATCATAAGCAAGGTGGTTATGGTTATGGATGCTA ATTTTTCATTCACAATTTTATTTTCATATATCTTAGTAACGGTTTAAGCAGTCGCTTCAATGTGAGTTCTGGTATATAAG CTAGTATTTTTTCCAAAATCCAAATGTGTTCCTTAAATTTTTTATTCTGTTTGCATCTAGTAAAAACATGAAGTTAGATG GAGTATATTAATATTGATTCTTTTCCCATCTAAACTGATTGCCTTCAAATTTTAGTTGATACATATAATTGCAAAATATG GCTATCTGGTGAGGGAGTAAAAAACTATACTATCGGATTTATTCTTTATGCTGTTCTGTTTTCAAGTTGAAGGTATGAAT GCATTTAAGGCATACAAAGCATGTGTCCCAATTGCTTGGAGCCCAAATCTCTATATAACTCTGGTGAGGGGCATTCCAGG GACCAGGAGGCTCCACAGACGCACTTTGGAAGCACTACGCCTGGGAAAATGCAATCGAACTGTCATGCGATGGAACACGC CTACTGTTAGGGGAATGCTCCAACAGGTTCTAATACAAGCTCTACTACACATGTCCCTTTTCTGCTGGAAATTAATGGTC TTTCTGTACAGTAACATTGCAAAACTTGGTAATTTGTGCAGGTCAAGAGGCTAGTTGTCATTGAGACAGAGGAGATGTAC AAGGCCCGCAAACAGAAGGAGGAAGCCCACCGAGCTCTGCGTCCTCCATTGGTCATAAATCATCAACCGTCTTCGGCTAC TGGTACCTTATAATAGCCTGCTGTTGTCTTAAAGATTATGTCTTCTTGCTACTGAAACTATCAAGGGCTGAAGTTAGCGA CTTTGGCCTCAAATGGATAAATTCTTGCTTTGAAGATCATGCTTTAGTTTGAATTTATAATTTTGTAGTCTTTTCAACTT ATATTCGTTAGTCAAATTTAGGCCTTTGTTTATGAAAACAGGCTATTTAGGAGTTTCTTTATTTATATTTAGAGTTGGGG AATCGATGTTCTCCAAATGCTTATTTCTTTTGGAAACAACTTACAATCTAGTTTGCATTTATATATCTGTCATTACTTAA TAATACATAATAATTGCTTTTAATAATAAAAGAAGGTTCTGCTAGTCACCCAAAGTTAACATCCACGGGGCATGATATTT GCTTCTTGCACACCAATGTAGGGTCAAATAGAATTAGATTTTTATTTGAAGACTATACTCTATGCTTCTTCCTTTCCATC AACACCAATTTTGACCTCATTTGCAATCACAAGCTCTTTATCTACATTGTCTTCAGGCTCTATGTTGTGCTGAACTTTGT AATGATGCCTCATTGCCAAGACAATAAAGAGTATAAAATTCAGTACTCCCAGCACAACTAGCAGCCAATAGAAGTAATCT AACCTTCCCTTGTTCAGATTGCTCTTGAACCACTTTTTCTTACTCAATTTGTCCACAATTGACACCAATAAGCTACTGAC AAAATACCCCATTGAAATTGCAGTTAGGAAAAGTCCAGTGCTCATAGATTTCATTCCCTCTGGTGCCTCCCTGATGAAAA ATTCTAGCTGTCCAACATAGGCAAATGCTTGCCCGGTAGCCACTAGAAAAAGCTGAGGTACCAGCCAAAAAGCACTAATT ATAGTGTGATTTTTTACTGCATTATCCCTTCTTTCTTTCTCAGCAATTGCTGCAACCACCATTGCAACAGTAGCGCAAAC AAGTCCAATTCCAATCCTCTGAAGACTTGTGAGCCCGTGTATATTGTGAGTGAATTTCCGAGCCAATGGCACTGTGAGTT TCTCATTTAGGGAAGTAAGGAGGAGAATGGTAATGATGACAAAAGCTGGTAGTGATCCTGCTGGGATATCTAGAGATCCA ACTTTTCTGTTCATGAGTTTAGCTTGCTGAATGATGAAGGAGCTAACTGCAGAGGAGCTGCCTAATGAGCTACCTCCCAT GCGCGATATCCAGCACCAAATAGACCTGATTCCAGGTGCTGTCCTGCCAAACCTTCCCCATTACCGCATGAGTCCCAAGG AGAATGAGATCTTGAGGGAGCAGATTGAAGATTTGTTGAAGAAAGGCTTTATTCGTGCCAGCATGAGCCCATGTGTTGTA CCTGTGCTCCTTGTCCCTAAGAAAGGAGGTCAGTGGCGAATGTGTGTGGATAGTAGAGCCATCAACAAGATCACCATCAA GTATCGCTTCCCAATCCCCCGCTTGGAAGACATGCTTGATGAGCTGGTTGGTTCTAAGGTGTTTGCCAAAATAGATCTGC GCAGTGGCTACCATCAGATCAGAATCAGACCTGGAGATGAGTGGAAGACAGCTTTCAAGAGCAAAGATGGTCTTTATGAA TGGCTGGTGATGCCTTTCGGGTTGTCAAACGCCCCTAGCACTTTTATGCGGCTGATGAACCAGGTTCTTCGTCCCTTGAT TGGTTCTTTCGTTGTAGTTTATTTTGATAATATTCTGATTTACAGTAAAACAAAGAAAGAGCATTTAGAGCATGTGAAGC AGGTTTTGCAAGTCTTACAGGAGAACCAGCTGTACATTAATCTAAAAAAATGTATGTTCAGCAGCGACAAATTGCTTTTT CTAGGCTTCATTGTTGGAGCTGAGGGGATTCATGTTGATGAAGAGAAAATTCGTGCAATCAGAGATTGGCCCACACCCAA GTCAGTGACTGAAGTCCGCAGCTTTCATGGATTGGCTACCTTCTACAGGAGGTTCATCAGAGATTTCAGCACCATAACTG CCCCTATCACTGAATGTTTAAAGAAAGGAAAGTTTCATTGGGGTTATGAGCAAGAGCAGAGTTTTATTCGAATCAAGGAG AAGTTAAATCGCAGTTCTACTGCTCATCCGCGGACTGATGGCCAAACTGAAGTCACCAACAGGACCTTGGGGAATATGAT TCGGAGCATATGTGGTGATAAGCCAAAACAGTGGGATGTGGCACTTTCTCAGGTGGAGTTCGCTTATAACAGTGCTGTAC ACTCAGCTATCGAAAGGTCCCCTTTTTCTGTAATTTATACTGCTGTTCCAAAGCATGTGGCGGATTTACTAAAGCTTCCT AAGGCACCAGGCGTTAGTGCATCAGCCGAGACCATGGCCAAGGAGGTTGTTGCTGTTAAGGAATCTGTGAAGGGTAGCAT AGAGGCTGCTGGGAAGAGGAACAAGGTTGCTGCTGATAAACACCGGAGGGCTAAGGTCTTCAATGAGGGAGATGATGTTA TGGTGTTTTTGCGCAAGGAGCGGTTCCCAGTAGGTACTTACAACAAGCTGCAGGCGCGCAAGTACGGGCCATTCAAGGTG ACTCGGAAGATCAATGATAATGCTTATGTGGTGGATCTCCCGGATCATATGAATATCTCTAAAACTTTCAATGTGGTTGA TATTCACGAGTACCAGGCAGACAAGGCTCTTTATCAAGAAGATAACTCAGGGTCGAGTTCTTTACAGGTGGAGGAGACGG ACGCAGACAAGCTTGCTGCGCGTTTTGATGAAGATGTTGCGCGTGTTTCCGTCTGATGCAGGAGCAATTAATTAGGAAGT TATTATTTTTAGTATTTCTAAATAAATTTAGGGTGGTTTATGTTTTTTAATTAAGTTAGAATCTTTATGATCTTACTTAT TTTTTTGTTAGGAACTTATTTATTTTCAATTACGATCTTTTATTTTTAATTAGGATCTTTTAGGATATTATGTATTTTTC TGTTAGGATATTTTCTTTTCCTATTTAAGAACTTGTAAGGCATAGCCTATTTCAGATTATTATTGACAATCAAAAAACGA GAATTTTCTCAAATCCTGGTGGATTCCGATTTTCTGTTACTTAGGGTTTTGTGTTTGCAAACCCTTGTGCGTTCCGTTGT GTCAATGATAGATCATGTACTGCTACAATCGATGATTCAATTTCAATAGAATTCAGTTCATTCACTATCAAAGCGTGTGC TTATTTTAAAAAGAAAAAATAAATCAAATGTAGCGTAAAGACTACAAAATCTGACATTAAGATCCATCATGTTCTTCAAA TCGCAAAAAGACTACAAGATATATAGGCTACAAAGCAGTCATTTAACAATAATTTTCTGCTACTACAAAGTCATTTAAAA TGAACCACACAGTTTGCAGACTTCTTTGGGCACAAGGACAGTTGATCAAATATATAATGCTTCTCCATGGGACGCAAAGA AGAAATACCGCAGATTGTCATGGTTTGTAAAGATGATGAATTCTGCATAATGTATTCTGCAAACCGCTTCTCATTTTCAT GTCCACTATAATGTGTGAGGGTGCACTTTCTAAATTGTGAAGAAAGGCAATGAGGAACAGCATCTGGAAAATTGAAAACC TCATCACCAAAAGAAATTCCAAACAACAGAACATCATCAAGTAATCTGTTCTTTTGTCCGAGCTTATCAACTACAAGATC TTGAAGCTTGGGGCTTTTCTTGAGGAAGTCGAATACCAAAGGCCAAGAAATAGTTCTCAATGGCAAGATAAGCTCCAAGT GAGTTAAATTGGGAAATGCTGGAACTTTCTCATTACCGCGCTGCAATGGTTACAAGACAAATTATTAGAAAATTGAAAAC AGTTTTATAAAACTGTACATAATCATACGGATCCTTAATAATTTTCAAACATTCAAACCTTCTCTACTCGAAGAAACTCC ACATTGGCTAAAACTATGAGGGGAATATTAGGATTACACGTTGCAGAGATACTTGCGCTCACCAACTTAGGTAAGCTTGT ATACTCAGCCTCAGATAAACCACCACACTCAAAACATATATCATGTGCTTCCAA
Download Genomic Sequence

CDS sequence (LotjaGi1g1v0065300.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAATGCATTTAAGGCATACAAAGCATGTGTCCCAATTGCTTGGAGCCCAAATCTCTATATAACTCTGGTGAGGGGCAT TCCAGGGACCAGGAGGCTCCACAGACGCACTTTGGAAGCACTACGCCTGGGAAAATGCAATCGAACTGTCATGCGATGGA ACACGCCTACTGTTAGGGGAATGCTCCAACAGGTCAAGAGGCTAGTTGTCATTGAGACAGAGGAGATGTACAAGGCCCGC AAACAGAAGGAGGAAGCCCACCGAGCTCTGCGTCCTCCATTGGTCATAAATCATCAACCGTCTTCGGCTACTGGTACCTT ATAA
Download CDS Sequence

Protein sequence (LotjaGi1g1v0065300.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MNAFKAYKACVPIAWSPNLYITLVRGIPGTRRLHRRTLEALRLGKCNRTVMRWNTPTVRGMLQQVKRLVVIETEEMYKAR KQKEEAHRALRPPLVINHQPSSATGTL
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR15892
1 99 99 1.5E-47
IPR005996
Hamap
MF_01371_B
16 73 58 14.346
IPR005996
Gene3D
G3DSA:3.30.1390.20
17 73 57 9.5E-18
IPR036919
SUPERFAMILY
SSF55129
18 72 55 1.09E-15
IPR036919
TIGRFAM
TIGR01308
19 72 54 5.2E-18
IPR005996
CDD
cd01658
19 72 54 2.11677E-16
IPR005996
Pfam
PF00327
20 69 50 2.1E-16
IPR016082
MobiDBLite
mobidb-lite
82 107 26 - –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003735
Molecular function Structural constituent of ribosome The action of a molecule that contributes to the structural integrity of the ribosome.
Subterm of
GO:0006412
Biological process Translation The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
Subterm of
Part of
GO:0015934
Cellular component Large ribosomal subunit The larger of the two subunits of a ribosome. Two sites on the ribosomal large subunit are involved in translation, namely the aminoacyl site (A site) and peptidyl site (P site).
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi1g1v0065300.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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