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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR018163
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We have found 23 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.625s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0001799.1
n.a. PREDICTED: threonine--tRNA ligase-like isoform X2 [Cicer arietinum] gi|502134625|ref|XP_004502185.1| chr0 500893 504848 -
2 domain predictions
1 GO term
Lj0g3v0274769.1
n.a. PREDICTED: threonine--tRNA ligase-like isoform X2 [Cicer arietinum] gi|502134625|ref|XP_004502185.1| chr0 142460730 142464602 +
2 domain predictions
1 GO term
Lj1g3v3330180.1
n.a. PREDICTED: probable alanyl-tRNA synthetase, chloroplastic-like [Glycine max] gi|356516209|ref|XP_003526788.1| chr1 37941452 37954161 -
2 domain predictions
1 GO term
Lj1g3v3330180.2
n.a. PREDICTED: probable alanyl-tRNA synthetase, chloroplastic-like [Glycine max] gi|356516209|ref|XP_003526788.1| chr1 37941452 37957052 -
2 domain predictions
1 GO term
Lj2g3v1378840.2
n.a. PREDICTED: threonyl-tRNA synthetase, mitochondrial-like [Glycine max] gi|356497888|ref|XP_003517788.1| chr2 21766122 21774927 -
2 domain predictions
1 GO term
LotjaGi1g1v0556500.1
n.a. Alanine--tRNA ligase; TAIR: AT5G22800.1 Alanyl-tRNA synthetase, class IIc; Swiss-Prot: sp|B9HQZ6|SYAP_POPTR Alanine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|V7AUH7|V7AUH7_PHAVU Probable alanine--tRNA ligase, chloroplastic; Found in the gene: LotjaGi1g1v0556500 LjG1.1_chr1 108857917 108866016 -
2 domain predictions
1 GO term
LotjaGi1g1v0556500.2
n.a. Alanine--tRNA ligase; TAIR: AT5G22800.1 Alanyl-tRNA synthetase, class IIc; Swiss-Prot: sp|B9HQZ6|SYAP_POPTR Alanine--tRNA ligase, chloroplastic/mitochondrial; TrEMBL-Plants: tr|V7AUH7|V7AUH7_PHAVU Probable alanine--tRNA ligase, chloroplastic; Found in the gene: LotjaGi1g1v0556500 LjG1.1_chr1 108860260 108865746 -
2 domain predictions
1 GO term
LotjaGi2g1v0318100.1
n.a. Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp|O04630|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A0S3T3W6|A0A0S3T3W6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0318100 LjG1.1_chr2 79300976 79310558 -
2 domain predictions
1 GO term
LotjaGi2g1v0318100.2
n.a. Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp|O04630|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A0S3T3W6|A0A0S3T3W6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0318100 LjG1.1_chr2 79302473 79310414 -
2 domain predictions
1 GO term
LotjaGi2g1v0318100.3
n.a. Threonine--tRNA ligase; TAIR: AT5G26830.1 Threonyl-tRNA synthetase; Swiss-Prot: sp|O04630|SYTM1_ARATH Threonine--tRNA ligase, mitochondrial 1; TrEMBL-Plants: tr|A0A0S3T3W6|A0A0S3T3W6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi2g1v0318100 LjG1.1_chr2 79302478 79310414 -
2 domain predictions
1 GO term
LotjaGi3g1v0313900.1
n.a. Alanine--tRNA ligase; TAIR: AT1G50200.1 Alanyl-tRNA synthetase; Swiss-Prot: sp|P36428|SYA_ARATH Alanine--tRNA ligase; TrEMBL-Plants: tr|G7JNH3|G7JNH3_MEDTR Alanine--tRNA ligase; Found in the gene: LotjaGi3g1v0313900 LjG1.1_chr3 66424910 66438064 -
2 domain predictions
1 GO term
LotjaGi3g1v0313900.2
n.a. Alanine--tRNA ligase; TAIR: AT1G50200.1 Alanyl-tRNA synthetase; Swiss-Prot: sp|P36428|SYA_ARATH Alanine--tRNA ligase; TrEMBL-Plants: tr|G7JNH3|G7JNH3_MEDTR Alanine--tRNA ligase; Found in the gene: LotjaGi3g1v0313900 LjG1.1_chr3 66424910 66438089 -
2 domain predictions
1 GO term
LotjaGi3g1v0527600.1
n.a. Alanine--tRNA ligase; TAIR: AT1G50200.1 Alanyl-tRNA synthetase; Swiss-Prot: sp|P36428|SYA_ARATH Alanine--tRNA ligase; TrEMBL-Plants: tr|V7AHV6|V7AHV6_PHAVU Alanine--tRNA ligase; Found in the gene: LotjaGi3g1v0527600 LjG1.1_chr3 94396706 94414668 +
2 domain predictions
1 GO term
LotjaGi3g1v0527600.2
n.a. Alanine--tRNA ligase; TAIR: AT1G50200.1 Alanyl-tRNA synthetase; Swiss-Prot: sp|P36428|SYA_ARATH Alanine--tRNA ligase; TrEMBL-Plants: tr|A0A0S3SE77|A0A0S3SE77_PHAAN Alanine--tRNA ligase; Found in the gene: LotjaGi3g1v0527600 LjG1.1_chr3 94396787 94413472 +
2 domain predictions
1 GO term
LotjaGi3g1v0527600.3
n.a. Alanine--tRNA ligase; TAIR: AT1G50200.1 Alanyl-tRNA synthetase; Swiss-Prot: sp|P36428|SYA_ARATH Alanine--tRNA ligase; TrEMBL-Plants: tr|V7AHV6|V7AHV6_PHAVU Alanine--tRNA ligase; Found in the gene: LotjaGi3g1v0527600 LjG1.1_chr3 94396787 94413472 +
2 domain predictions
1 GO term
LotjaGi3g1v0527600.4
n.a. Alanine--tRNA ligase; TAIR: AT1G50200.1 Alanyl-tRNA synthetase; Swiss-Prot: sp|P36428|SYA_ARATH Alanine--tRNA ligase; TrEMBL-Plants: tr|V7AHV6|V7AHV6_PHAVU Alanine--tRNA ligase; Found in the gene: LotjaGi3g1v0527600 LjG1.1_chr3 94396812 94412994 +
2 domain predictions
1 GO term
LotjaGi3g1v0527600.5
n.a. Alanine--tRNA ligase; TAIR: AT1G50200.1 Alanyl-tRNA synthetase; Swiss-Prot: sp|P36428|SYA_ARATH Alanine--tRNA ligase; TrEMBL-Plants: tr|V7AHV6|V7AHV6_PHAVU Alanine--tRNA ligase; Found in the gene: LotjaGi3g1v0527600 LjG1.1_chr3 94396812 94413472 +
2 domain predictions
1 GO term
LotjaGi4g1v0341800.1
n.a. Alanine--tRNA ligase; TAIR: AT3G16565.2 threonyl and alanyl tRNA synthetase second additional domain-containing protein; Swiss-Prot: sp|O57734|ALAXL_PYRHO Alanyl-tRNA editing protein AlaX-L; TrEMBL-Plants: tr|I3T4Y8|I3T4Y8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0341800 LjG1.1_chr4 72151757 72157617 +
2 domain predictions
1 GO term
LotjaGi4g1v0341800.2
n.a. Alanine--tRNA ligase; TAIR: AT3G16565.2 threonyl and alanyl tRNA synthetase second additional domain-containing protein; Swiss-Prot: sp|O57734|ALAXL_PYRHO Alanyl-tRNA editing protein AlaX-L; TrEMBL-Plants: tr|I3T4Y8|I3T4Y8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0341800 LjG1.1_chr4 72154039 72156499 +
2 domain predictions
1 GO term
LotjaGi6g1v0022700.1
n.a. Threonine--tRNA ligase; TAIR: AT2G04842.1 threonyl-tRNA synthetase, putative / threonine-tRNA ligase; Swiss-Prot: sp|F4IFC5|SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|G7J9I7|G7J9I7_MEDTR Threonyl-tRNA synthetase/threonine-tRNA ligase, putative; Found in the gene: LotjaGi6g1v0022700 LjG1.1_chr6 4271283 4277318 -
2 domain predictions
1 GO term
LotjaGi6g1v0022700.2
n.a. Threonine--tRNA ligase; TAIR: AT2G04842.1 threonyl-tRNA synthetase, putative / threonine-tRNA ligase; Swiss-Prot: sp|F4IFC5|SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|I1NAJ0|I1NAJ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0022700 LjG1.1_chr6 4271903 4275837 -
2 domain predictions
1 GO term
LotjaGi6g1v0022700.3
n.a. Threonine--tRNA ligase; TAIR: AT2G04842.1 threonyl-tRNA synthetase, putative / threonine-tRNA ligase; Swiss-Prot: sp|F4IFC5|SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|I1NAJ0|I1NAJ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0022700 LjG1.1_chr6 4271903 4275839 -
2 domain predictions
1 GO term
LotjaGi6g1v0022700.4
n.a. Threonine--tRNA ligase; TAIR: AT2G04842.1 threonyl-tRNA synthetase, putative / threonine-tRNA ligase; Swiss-Prot: sp|F4IFC5|SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|I1NAJ0|I1NAJ0_SOYBN Uncharacterized protein; Found in the gene: LotjaGi6g1v0022700 LjG1.1_chr6 4271903 4275840 -
2 domain predictions
1 GO term