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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0341800 |
| Transcript ID | LotjaGi4g1v0341800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Alanine--tRNA ligase; TAIR: AT3G16565.2 threonyl and alanyl tRNA synthetase second additional domain-containing protein; Swiss-Prot: sp|O57734|ALAXL_PYRHO Alanyl-tRNA editing protein AlaX-L; TrEMBL-Plants: tr|I3T4Y8|I3T4Y8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0341800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:72151757..72157617) extracted from Lotus japonicus Gifu genome v1.2.
TGTTGCTAATCTGCAATCATCTTCCTTAAAATGCATGCAACCGCGTGAATGGAAGATGAAAGCTGTTAAGTGCAGTTTGA TGTATGAACTTACAAAAGTAGTGTTTCTTGGCCACTCGTTAAGGACCTTAAAATACGCCCTTTACAACTCAATAAAGTAG ATGGTTATGCAATCTACACGCATGGTCACACTCATGTGAAAATGTTGAAGTTGAAACAATCTGTTTCTGTGTAAGTTCCT CAACTCCCTTTATGACCTTTTCTATTTTTCTATTATTATGTGGTTATAGATTTTCTATAATTTTTATTTAGATTTTTGTG GCTGTAGTTCTTGTTTAAGTTAGAATTTCATTTGTTTTTTTAGATGATGTTACTTTAATGGTTACAGATCTATTGAATCC TATATCAAACACAGGATTCTGTTGGAAAATTATTGACGGTCTTCTTCCTTAACCTAATATCCTTTCATTAGTTCCATATG CCTTTAATTGGTAAATCTTCCAAGAGGGAAGGTCCAGGGTTTCTAAAAATAGTAGAACAAAACAACACTATAGACTGCTG AGTAAGGCATTAATGACACAAAACACCTATAGACTATGAATAAGGCGTTAATGACACAATAAAAAGGTAAGTGAATGTTC ATTAGTGGCAAAAAAGCGCTAAAGAATCTTTATGAGAAATATTATTCACAAGACAAAATTTAACTTGACGCAAGTAATTC ACACCCTCGCCTATAAAAAAAAAAAAAGTAATTCACACCCCCATATGAGGAAGTGAAAATTAAACATGAAAAATATGTCC TATTGTATTTTGCTAAAATTTCATTAGCCAAAACTCTCTTTCCTTTTAAGCTATATTGCCCATACTTTATAAGAGTTGCT TGTAATTTTTTTTTCCTCACCTTCTATATGCTATAATTAACTTGAAAAGTGATGCTAGAGTGTCCTGTTTTTAGAACCTA CACTAAGACAGATGATACTATATTGAACAAAACATAACTCATCATATGATTACAGAATGATCTATATGCACTAGTCAGAA TAACCAATAAAACGTGACCTATGTATCGCTTTTACTAACATTTTCTGAGTTCATTCAATCAATCACATGGAGTTCATACA ATCACATCTGGAGACTATACAATTACAAGGGAATATTGAATCTGAAATGTAAGAAAAAGAAAATTTGCATTTGAACATGT TTTCCTATTCTGATGCTTAACTAGACTTCAAACATTTTACAAAACAAACTTAGTTCATAATCTCCATCGCAATATTCACA CGAAATTCCAACACAATCATCATCATCTTCATCCTCAACCAACCATGACCATCTTCTCCTTGCAACTCTCTGCATCCTCT CACTGCTATCACACATGCTGGAACAGCACAGAGACAATCTCCTGTTTCGAACCACAGGATTATTCACCCACATACTCCGA ATAAACGAACGCACCCTCTTCCTGCATCTTCCAATACCACACGATGATGCCATTTTCCTTTTCAAGTCCCGAAAGAGATC AAAACCTTCTTTCCTCTCATCTTCATTCTCACAACACATCAAAAGCATAGCATATACATATTTAGCTTCACCATGACCCT CCAACGCTGCTTTTTTCAAATTCTCAAGCCCTGTTCTCACCCTCAAGGAGCTGAAATACTGAACCATTCCCTCACGGTAC TGAATCTCCGAGTTACCACTCTCCTTGCAACGTTTCAAGAACGATGATTCTCTCTCACCGGTGAACCATGGCAGGGGAAC CATCGCAAACTTCTCCATGGACGCATGGTGATACACATGATCATCCTCTGCAACATGGAGAAGCTCCTTGCAGCTTAGTT TCACCTTGCAGAGGTCAAACATGGAGGTAGATGCAACCTTCCCAAGAATCTCCACCAGCAACTCGTTTGGAAGAGCTCTT ATGATGCTTGGACACTCATTATTCCTCTGTTTCCTCTGTTTTTTGCTCTGTTTCTTGTTGCTTCCATGCTTCACTCTTAA ATCAGCCATTGGTTAAAGATTGCATGTTATCAATTTTTTATGGTTTTATAGATAGAGTTTGCCACTTTCCTTGGATTTAT GTGTGTGATGCATAAGCATTCGGTTGGTGGGTTTGTGGTTGGACCGAGTAAAAATCAATCAACAATTGCGTATTGCAATT TGGTCCTACGTTGTTCTGTTCCATCCACGTGTAAAATTAGGTCTATGTTCCTTTTTCTCTTGCTATGCTGACGCCGCCAT GTTCTATTGTTGTTATTGTTTTACCAATTCTGGAATTCTGTGGAGGACATGGATAAGAACCCCACGAAGCTGGATTACTA TGATGACATGTGGATGCTTCAATCCACTGCCACACTCCTTTCTCACTTCAAGGTTTGCTTCATTTTTTTGAGAAATTGTA GGAATGATTGAAGGGTCAGAAAAATTAGGAAAATAGAGTTAGCTATAATCATGGTTTATCTAATTTCTTAAGTAATTTTT TTTTTGTTTTTTTTTTGGGATGGTAAATGTGTGAATAGGGAGATGATGGAAGACATGCTTTGATATTGGATAGAACAATT TTCTATCCGCAAGGAGGTGGTCAGCCAGCAGACACTGGTTTCATATGCATTGAAGGTTCAGACATCAAGTTTGTGGTTCA TGATGTTCGATCAAAAGATGGAATTGTAAGTTTTGGATCATAAAGAAAAAGTTTTAAGCTTTTATGGTGTTAACTATTAT GCTTAACATTGTAGTGGTTACCATTATGTTTTTATTTTCTGTGCAGGTTTTTCACTATGGTGACTTTGAGAATCTGGGAG GGGAAGTTGAGCTCACACTCGAGAAAGGGAAGGAGGTTTCACTGTTTGTTGATGAATCCAGGAGGAAACTGAATTCTAGG TAGAAAAAATTGCAAATGATGAAATTTTCAATCTTTTTTGAAGTGGTAGTGGGTAGTGGGTACTGCTTTTTTGAAGGTAG CCTTTTTAAGAATTAGTGGTTATTAAAATTGTTTCATGGAAATCCTATTGCTACGCACTAAACACTGCACTCAAAATAGA GTTTTGATTTGCTTTCACTGCAATTGAAAAAACTTTACCTTCTGAGCTTAATTTATGCCCTGCTTTTCCCTTGTTGATCA TATGATAGTACCAACTTTTTAATCAATGGTTTTATAAGAAGGGCTTTATAGCCTTGATTTAATTTCAACTAGGCTGTTCT TAAACTCTCTTCTAAATGTATGATATTGATCTCTATACGCTTATAAAAAAATTGTAATGCTGCTTCTACAGATCCCATTC TCTACTTGTTCTTTATTGTGTAGGTTGCATTCAGCTGGGCATTTGCTTGATATTTGTCTGCCAAGAATAGGATTGGGTCA CTTAGAGCCTGGCAAAGCTTACCATTTTGCTGATGGGTATATCATTTACTTGCTTTGAATGCATTTTATGTGCTGTGTAT TTAACACTAGCTACGAACACATAACCTGAAATGAATTGAAACTTGAAAGCGATTTCTTAGTTTATTATCCCAGGTCAAGG GCAATGTTGCATCTGTCAAACCATTGCAAATCTAGGATAGTGTTAACCATCATTGAGTGTAGTTATTATTATTATTATAA ATAAAACAAACCCTTAAATTGGTCCACCAAAGATACAAAATAGTTATCAAATTCACCCTTTGTGTCACCTCTATAGTCCT TTATAAGAATGAATATGGCGCAATAATAGATCTTTTAGGGAATTACATGCTGAGAAAAGCTTTGAAGGACCAATTTAGGG ATTTAATCGAAGAAAGGTGTACAACCTTGAGTACTCTCCTACTATTGTCGAACATTCTATTTATCTGCGAGTTGCAAAGA TTGTTTCACACGTCTATTACATTGTTTTCTAGGCCTTGGGTTGAATATAAAGGTGTAATTCCACAAAATGAAATTCAGAA TAAGCAGAAGGATTTAGAGCTAGAGGCTAATGCTTTAATTTCCGTGGGAGGAAAAGTAAGTGACAATGTTCATAAATTGT TTTTACATGTTGCTTATGGTTCTGAAAACCTTCACTTTGCTATTTAGGTTTCTGCTGATATATTATTGTATGATGAAGCT GCTAAGCTCTGTGGTGGTTGTCTTCCTGATTATGTTCCCAAGGTTAGTCTATAAAAGATATACGCTTACTGCAAATAAGA AAGATTGCTGACAAGAAAAAGGAGGATAAATCAGTAATCTACTAGGTTACAGTGTTCACTCTCCTATGCTTAAAATGTTT CCTAATGTCTAACTTTGTAATCTAACAAGGTGCCTTCCTGTTTCTTTGTTGTAAAACATGTTTGCTTTCATTCAGGATAA ATCAGTAAACTTATGTTGGAAACTGGTGAAATCTTTTGAAATGGCTAACTGAGAGCATTCCTAATTTCACAATTATATGC ATTATATGCTTGTATATGTATCAAAGGATATGAAAAAATATTCATTTTTATCTCTTGTTTTGTTCTTTTTTATTTTTGTG AACCATAGTATATGTGATGTTAACACATCAACTCTCACAGGAAAGCACACCTCGCATTGTGACGATAGGAGGTAATCCAG GCTGCCCCTGCGGTGGTACCCATGTTGCTGATATCTCAGACATCATACAAATTAAGGTGTGAAATCCATTTACTAACCCC GCTCACCTGGGTGGATTTGATTATTTTGATGATAGTTTGCTCTTAGTAATTCATTCATTACATGAAATCATTTTCTTGAA GATGTTGGAATGAAAACTTATAGCATGTTTGAATCAGATTCTATTTTCTCATAATCAATTGTGCCACCCATAACCAGAGG CCTACTCACTTAAGCTTCTCCCCAGAATTAATTTTGGCGAATAACTTGTTGAATGATTTCCAAACATGCACTTAGTAGTT GAGAGAATAGCCTCCTTTCTAGTTATATTTGGTTTGCTTAACAATTTTGCGCTATATGCTTCTATAACCTATGTATTTGT TCAGGTTTCTCAAATTCGCTCGAAGAAAGGACAGACAAAAGTCTATTACAATGTTGAATCTTAGTCATATGTGGCCGAGT CTGCTGCCAAGTCATTGCTATTTGACCTCCATGATGATGACTACTCTTGGATAAGCTATTTTGCTTGCTAAATTTGTATC CATTGATATGAATTTTGGATTTTATACCACAAGTGGCTGTCATATCTAGTCATAGCCTCAAAGAAAGCTTTGTATTTACA ATGAGTTTGAAAAGAACAATTATCCAATAGTGTTAGCGATTGAAGAAAACAACAGCAGCAGATAGAACAATAATCCAATT GAGTCTGGCTTCTTTTTTCCATTGTTTGGATTTTTTCCAATTTGATCTTTCTGTTGTATCGGGTTGGGACTTCCCTTGTG CTCTCAATCAATATATTTGGCTTATAAAAATACAGGAATTGGAGAGACTGATATTTAAAAAAAAAAGATGATGCTGAGGT TTTGGTTGTGTTATCTATCTCTATCATCATAGGCTTATAAGCAAGCACCTCTAACACAGAGAAACTCTCACTCAGGACAA TGAGTCATAGTATGGACACCGAGCAGACCCCGCAAGTGAGTGGAATGCCCTCTAACGATAGTTGCCCGGTGGAGGAGGTT GCTCTGCTAGTGTCGGATGCCAACATGACTTTCTGGCATGGTTCCTTGGCCTAACCTCTTGCCTTCAAACTCACATGTTT TAAACAATTGGCAACTTGATAATGATTGGTAGCATGTTTGGATCAATTTATTTTTCGTTCAGATTCAATTCTGGCACTGA GAGTAGCTTTTCCCCATAATTGATTTTGGTTGTAGAATTAATTCACTTAAGACAGTTTAAATCCGGATATTTTGTTCTGT CATCTCCTCTTAAGATTTAAT
CDS sequence (LotjaGi4g1v0341800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGATAAGAACCCCACGAAGCTGGATTACTATGATGACATGTGGATGCTTCAATCCACTGCCACACTCCTTTCTCACTT CAAGGGAGATGATGGAAGACATGCTTTGATATTGGATAGAACAATTTTCTATCCGCAAGGAGGTGGTCAGCCAGCAGACA CTGGTTTCATATGCATTGAAGGTTCAGACATCAAGTTTGTGGTTCATGATGTTCGATCAAAAGATGGAATTGTTTTTCAC TATGGTGACTTTGAGAATCTGGGAGGGGAAGTTGAGCTCACACTCGAGAAAGGGAAGGAGGTTTCACTGTTTGTTGATGA ATCCAGGAGGAAACTGAATTCTAGGTTGCATTCAGCTGGGCATTTGCTTGATATTTGTCTGCCAAGAATAGGATTGGGTC ACTTAGAGCCTGGCAAAGCTTACCATTTTGCTGATGGGCCTTGGGTTGAATATAAAGGTGTAATTCCACAAAATGAAATT CAGAATAAGCAGAAGGATTTAGAGCTAGAGGCTAATGCTTTAATTTCCGTGGGAGGAAAAGTTTCTGCTGATATATTATT GTATGATGAAGCTGCTAAGCTCTGTGGTGGTTGTCTTCCTGATTATGTTCCCAAGGAAAGCACACCTCGCATTGTGACGA TAGGAGGTAATCCAGGCTGCCCCTGCGGTGGTACCCATGTTGCTGATATCTCAGACATCATACAAATTAAGGTTTCTCAA ATTCGCTCGAAGAAAGGACAGACAAAAGTCTATTACAATGTTGAATCTTAG
Protein sequence (LotjaGi4g1v0341800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MDKNPTKLDYYDDMWMLQSTATLLSHFKGDDGRHALILDRTIFYPQGGGQPADTGFICIEGSDIKFVVHDVRSKDGIVFH YGDFENLGGEVELTLEKGKEVSLFVDESRRKLNSRLHSAGHLLDICLPRIGLGHLEPGKAYHFADGPWVEYKGVIPQNEI QNKQKDLELEANALISVGGKVSADILLYDEAAKLCGGCLPDYVPKESTPRIVTIGGNPGCPCGGTHVADISDIIQIKVSQ IRSKKGQTKVYYNVES
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 255 | 255 | 2.0E-113 | – | |
| PANTHER | 1 | 255 | 255 | 2.0E-113 | – | |
| Gene3D | 1 | 95 | 95 | 1.2E-19 | – | |
| ProSiteProfiles | 1 | 238 | 238 | 14.608 | ||
| SUPERFAMILY | 5 | 85 | 81 | 2.05E-16 | ||
| Pfam | 33 | 108 | 76 | 3.5E-12 | ||
| Gene3D | 106 | 256 | 151 | 2.6E-22 | – | |
| SUPERFAMILY | 106 | 252 | 147 | 1.09E-20 | ||
| SMART | 209 | 251 | 43 | 0.0061 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Alanine-tRNA ligase activity | Catalysis of the reaction: ATP + L-alanine + tRNA(Ala) = AMP + diphosphate + L-alanyl-tRNA(Ala). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Biological process | Alanyl-tRNA aminoacylation | The process of coupling alanine to alanyl-tRNA, catalyzed by alanyl-tRNA synthetase. The alanyl-tRNA synthetase is a class-II synthetases. The activated amino acid is transferred to the 3'-OH group of an alanine accetping tRNA. | ||
| Biological process | TRNA aminoacylation | The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules. |
Expression pattern of LotjaGi4g1v0341800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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