Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message
| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0022700 |
| Transcript ID | LotjaGi6g1v0022700.1 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Threonine--tRNA ligase; TAIR: AT2G04842.1 threonyl-tRNA synthetase, putative / threonine-tRNA ligase; Swiss-Prot: sp|F4IFC5|SYTM2_ARATH Threonine--tRNA ligase, chloroplastic/mitochondrial 2; TrEMBL-Plants: tr|G7J9I7|G7J9I7_MEDTR Threonyl-tRNA synthetase/threonine-tRNA ligase, putative; Found in the gene: LotjaGi6g1v0022700 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:4271283..4277318) extracted from Lotus japonicus Gifu genome v1.2.
AAGTGCAAGAAATTCAGAAAAGCAAACATATATTGTGGACACAGAATGGATGAGCGTGGATGAGTCCGAGTCCCTACTCT CTCATCATCATCTGCTTCTTTCTTCTCTGAAAATGGCGACCTTCACCGTTGCCATACCCACAGCTTTTCATTTCACAACA CAAACACAAGCACATTCACCCTCTTCGATTCCTCTCTTCAAATCATCACAAAGACGTTTCAGCTCCCTCCTCCTCTCTCC ACCCACAAAATGCCACTCAACCCTCGCCGCCGTCACCGCCGACTCCTCCCAGCCCCTCGCCCAACCGAACCCGGACCCGA TTGTTCTTCCGACTAACGAATCCTCTGGGACGCTTCTCAGAATCCGCCACACGGTAATGTCAATTCTTCTTTCACTTCGC ACTGCTTTCTGCTCTCAGTTGCGTTTAGCTGCCACTTTCTGTCGTTTTGCATGTGCACATGTTCATATTAAGAAAATGAG GATTTGGGGATGGTGAAATTTTGATTTCAAGTGGATAGTTTATAGTTTGATATTTTTTTAAAATTTAATAGAAATGAAAT AATAAATCATCGATTATATATTCATTGACATTGGATATGGTGTCGATTGTTTTAGTTTTCAAAAGATTAAATAAACTTCA ATTTTGTCATTTTTGATTTTTCAGTGACTTTAATTGTTCATGTTTTTTTTAGTGTAAATTAAACGTTTGGATAAACATAC TTATATGTTGTTTTGAATTTCTTTTCATAAGATGTTTAGAGAAGCTAATACTTAGTTATGGCCCCGTTTGGAAAAACAGC TTAATTAAGCACTTATGGTCATAGTTATAAGCGCTTATTCATAAGCTATTTTTGAAAATTTATTGAAATAAATTAAAAAT AAGCTGTATATAAGCATAAGCTGTTTTTCATAAGCTATCCTGAGTAGCTTATGAAAATAAGCTGAAAATAGCTTATGGCA GGTCATAAGCTGTTTGCATAAGCCCTCCCAAACACTGACATAAGAGCTTATGCTGTCAGATAAGCTCAAATAAGCTCTTC CAAACTGGGCCTATAGGCTAATTCGAGGTTATTTCAATACGTTTACCAAATTAGCTTATGATTAAGCTTTTAATTAAGTT GTTTATGAAACACACTCTAAAATTGCCGACACATGTCATTTAGAATAAAATTGACTATTTATGTGTCTTATTATTTCTTA TGAATATTATATAACCTTTACTTGCTTATAAAAAATATATATATAACCTTTTACTAATTTTATACAATAAATTAATTTCC TTTCTTTTTTTTCTAAAATCCCCTGGCCAAACATAGTTTTTTGGTTGGGGATGAAGGGGTGTTATTTTAAGATCTAAGTT AAAATATTTAGTTCCCTAATTCAATGTTAGGATAAGATATTTTTTGGGCAACTTAGAACTAGTTATACATATTGCTAACA CTATATGCAAAATATTGCAATATAATGTTTTACTTTTGCCTTTTATATTTATTTCAATTAATGTAAATGTAAGACTTTAA CGAGACCTGCATATTATTAGCAAAGTTATTTCTGTCATAACATCGCCGTTAATAATTGTTCTGAAATATTGATGTGTTGG TGAACATGAATAGTAAAAGTTAGTGTGGATGAGTTTACTCATTTACTATTCTTAATAAAGAACTAGTGTTTTATGTACTA CCAAAATCTTTGCCTTTTCTGTGCCACAAAATACTGATGATAGTGTTCACTGCATGCTTCTGTATCTTCGGTTTCACTAA TAAGTTGTGGACATGCAGTGTGCGCATGTGATGGCAATGGCCGTTCAAAAGCTTTACCCTCATGCGAAAGTCACCATTGG GCCTTGGATTGAAAATGGGTTTTATTATGACTTTGATATGGAACCTTTGACTGATAAAGATTTGAAGAGAATCAAGAAAG AGATGGTAAGCAGAGTTAGTTCATTAGATCTAAGTTCCATTCCACTTTTTTATATTTTGTAGTTATGTACTTTGTGTATG TGCCTCAAATTTTGCATCACACTATCAATTCAGGGAACTTAGTTATTTAGTTCTTTCATTGTATGTAGGATCGAATTATT AGCAAAAATTTACCCCTTGTGAGAGAAGAAGTTTCAAGAGATGAAGCTCATAGAAGAATATTTGCTTTGAATGAACCATA CAAGATGGAGATTTTGGAAAGCATTAAGGAAGAACCCATCACAATCTATCATATTGGTATCCTTCTGGCTTTTTCCACTT TTCTCCAGTTTTATTCCTGAATGTTGAAGCTTAAAAGCTAGAGAGCGAGGAGACTTGAGAGAGGAAAGGAAACGGTGATT GTGTGATCTAGGTTCATGATTGTTACACTCCATGTATGTGTATACTAATCATTCTGGTCAGACTAGAGAGAGATAAGGGT TGCTGTATGAATCTGCCTCAATGTGTTTAGGGTTAGTACATGTGAAGTCAATTGTATCGTTTAGAGCGCTGAACTTCTTT TGCATCTTTAACTTGATCAATTAATATGCTTCGGCAGAATGAAAATGGAAAATGTAGTGTGTCTGATTCTGATATTGGAA CTATGAAGATGGAAGTGTAAAGTAGAATAACAATGAAGAAGCATGGATGTTCTCAGAAAGAGTGCTTTGCAGGTTTCTCA CTGCATTAAGAAAAAGTTATTGCCTGAGGAGTTTCATCTGTTTTATAATCTCACATTACATTCCTTTTTCCTTAAAGGCG AGGAATGGTGGGACCTCTGTGCTGGACCTCATGTTGAAACTACTGGAAATATTAACAAGAAAGCGGTTGAGCTTGAGTCT ATTGCTGGGGCTTACTGGAGAGGAGATGAAAGGAAACCAATGTTGCAAAGGATATATGGCACTGCATGGGAGAATGAAGA GCAGTTGAAAGCTTACCTTCACTTCAAAGAAGAAGCTAAGCGTCGGGATCATAGGCGTCTAGGGCAAGATCTTGATTTGT TTTCTATACAGGTTCGATTATTAGTGCTATTTATATTGTTCAACACATTGATTTTGCTTTTTATTTAGATTGTACTGATG AATTATTAGATATAAATTAGTGTTCCGTTTTAATTCTCTTAAGTTTGTGGGTAAGTAACTGTTGATTCATGATGAAATTT TGCATGTAACATAATTGAATTTTACACAGGATGATGCTGGTGGAGGTTTGGTTTTCTGGCATCCGAAGGGAGCTATTGTG AGACACATAATTGAAGATTTTTGGAAAAAAATTCACATTGAACGTGGTTATGATCTACTGTACACACCACATGTGGCAAA AGCTGATCTTTGGAAGATCAGTGGTCATTTGGACTTCTACAAAGAGAATATGTATGATCAGATGAGCATTGAAGACGAAC TTTATCAACTTCGACCTATGAATTGTCCTTATCATATATTGGTATACAAAAGGAAGCTTCATTCATATCGGGATTTTCCT ATTAGGGTCGCAGAATTGGGTACTGTTTATAGATATGAACTGTCTGGAAGTTTACATGGCCTTTTCCGTGTTAGAGGTTT CACCCAGGTCTGCTGTTATACTTTGCTCATTTTCTTATTGACTACTCAGATCATATTGAAATGTTTGATCCTGTTATACA CTGGGCACCCTTTTTGAGTTTTTTTCGTCCCCTTTTTTAGTTTATGGCTTGTTATACCTTAATGTGAAATATTGTATATC CATCTTCAAGTTGCTGCATTTGGTTTTTATTACGTCTTGCGAATTGCATTCTGATAAATATGTTCTTGTTGGACTTCTTT ATCATTTTGACAGGATGACGCACACATATTTTGTTTAGATGACCAGATTAAAGATGAGATCAGGGGCGTCCTAGATCTTA CGGAACAAATATTGTTGCAGTTTGGCTTTGACAAATATGAAGTGAATTTGTCCACACGGCCTGAAAAATCTGTTGGAGAT GATGATATTTGGGAAAAAGCTACCTCTGCTTTAAAAAATGCTTTGGATGATAAAGGTTGGACCTATCAAATTGATGATGG AGGAGGTGCCTTTTATGGGCCAAAGATCGATATCAAGATTGAGGATGCTCTTGGTAGGAAGTGGCAGTGTTCAACCATAC AGGTAATTCATGACTTCCCTAACTTTGAAATCTAAAACACTTATTTTCCTTGCCAGTATTGGTCCTAGCCTCTTATCGAA GTGCTTACTTTCAGCTTATTGCATTTGAAATATTGTTACCCTGTTTTGATGCTCATATTTAAATAGCTAAATAAACCAAT ATAAGCTTTTTTACTCTTCTAGCATATTAAAATAACCTGTTGCAGAAGTTGAAAAAGGTGATAGTTGTTTTTGAAATAAT TTCTTTTGCTAAAAATAACTTTAATGAGTTATTGAAACTATCTGTATATTCAAATGTGCCATGCATTAAATTTTCCATGA CCAAGTAGTCCAAGTCTTGCACCCTCACTTATTTCGGCACTAGGTACAATGAGTTTTTGCGATGTCCATGCTCGTGTTAG GGGCTAAAGCTGTCTTAAATCTCTTACGATTGTCATTTGTTGGGGTTAAAGCTGTTCATTTCTTGCGTTTTGGTTAATTT AGAATGAAACTAATTCTCTATTTACCTCATCCAAATGGAACAGGTTGATTTTAATTTACCACAGCGTTTTGACATTACAT ATGTTGACTCAAACACTGAAAAAAAGAGACCTATAATGATCCACAGAGCAGTGCTTGGATCCTTGGAAAGATTCTTTGGC GTTCTCATAGAGCATTATGCTGGTGATTTTCCATTATGGCTTTCTCCAGTACAAGCTCGAGTTTTACCTGTTACTGATGC CCAGGTAATGCAACTAAGGACTACATAGAAAACTTTGGTTCATTTATATATGGTGATCCTATTTATACTGCTTTGGTATA TCTTCTGAGATTGGTTAACCCTGTCGAGTTCATGGAGAAAAGCTGAACTGTCTGTCTCTGACAAATGAATGGGTTATGAT ATGAGGGATTCCACATAGGAAGAAAGCCAAAACAGCTAATAGTATGATTTACACTGGGAAGCATTTATCTGTTAATTTTA GAACTCGCTGCAGACTTCTGAATTATATTCTGTAGACTTTATTTTCTTTCCAACTTTATGAGAACAAACCATGACCAGTG AATTAATGAGGAAAATTTTCTGTATTTTCACACAGCTTGAATACTGCAATGATGTGACCAACAAACTGAAAATGTATGGC ATCCGAGCTGAAGTTTGTCATGGAGAGCGTCTGCCAAAGCTCATAAGAAATGCAGAGAAGCAGAAAATTCCATTGATGGC TGTTGTGGGCTCAAAGGAAGTTGAAACAGGAACAGTTACAGTTCGATCCAGATTTGGTGGGGAGCTTGGAACCATGTCAG TTGACGATTTTATCAACAGAATAAAGCTGGGAACAGGAAATCAATCATCATTATGATATTCTTCCAATTGGCAAAAATAG TCATCCTATTCACTCATGTTAGATTGGAAAAAAATGGAAGGGGCGTAAATTTGAGATCGCATAATTTGTATATTAGACAA TGGAAAATGCTAAAAGTTATTATACGAAACACAAATGAAAGTTAACCCACAACCTCCCCTCCCATGATTTCTGTCAAATA ATACTGTTAGTTTTGACACAAACAACTCTTGCATTTCTTGCATTTTTCTAGACAACAGTTATCATAGATAATAGCTATTA AATACTGATGTCCATGTACTGCTGGTGGTGATATCTACAGTCTACACTGAGTTCAGTTGGTAAGTTTTCATTGAACAAAG GCAGAGGGTGGATTTGGGGCAGGGCAGACACAATCATCAGATTTGGCACTAGAACTTATATTTGTATCACAGCATTTTGT TGTTATGTTCCATACAACTCACCTCATCACCTTTCTCTGAAAAAGGCTTATCTTTTTACTGGGCGTTACATCTTTTTCAA TAAGTTCTTGTCATTGGTGTTAGATCTTTTAGTGTGTTGCATTATAAAACTATCAATTTATTAGTCACTGGTCTCATCTC AAATAATGACATCTATTTGAATTATTTGGTAATTCA
CDS sequence (LotjaGi6g1v0022700.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGCGTGGATGAGTCCGAGTCCCTACTCTCTCATCATCATCTGCTTCTTTCTTCTCTGAAAATGGCGACCTTCACCGT TGCCATACCCACAGCTTTTCATTTCACAACACAAACACAAGCACATTCACCCTCTTCGATTCCTCTCTTCAAATCATCAC AAAGACGTTTCAGCTCCCTCCTCCTCTCTCCACCCACAAAATGCCACTCAACCCTCGCCGCCGTCACCGCCGACTCCTCC CAGCCCCTCGCCCAACCGAACCCGGACCCGATTGTTCTTCCGACTAACGAATCCTCTGGGACGCTTCTCAGAATCCGCCA CACGTGTGCGCATGTGATGGCAATGGCCGTTCAAAAGCTTTACCCTCATGCGAAAGTCACCATTGGGCCTTGGATTGAAA ATGGGTTTTATTATGACTTTGATATGGAACCTTTGACTGATAAAGATTTGAAGAGAATCAAGAAAGAGATGGATCGAATT ATTAGCAAAAATTTACCCCTTGTGAGAGAAGAAGTTTCAAGAGATGAAGCTCATAGAAGAATATTTGCTTTGAATGAACC ATACAAGATGGAGATTTTGGAAAGCATTAAGGAAGAACCCATCACAATCTATCATATTGGCGAGGAATGGTGGGACCTCT GTGCTGGACCTCATGTTGAAACTACTGGAAATATTAACAAGAAAGCGGTTGAGCTTGAGTCTATTGCTGGGGCTTACTGG AGAGGAGATGAAAGGAAACCAATGTTGCAAAGGATATATGGCACTGCATGGGAGAATGAAGAGCAGTTGAAAGCTTACCT TCACTTCAAAGAAGAAGCTAAGCGTCGGGATCATAGGCGTCTAGGGCAAGATCTTGATTTGTTTTCTATACAGGATGATG CTGGTGGAGGTTTGGTTTTCTGGCATCCGAAGGGAGCTATTGTGAGACACATAATTGAAGATTTTTGGAAAAAAATTCAC ATTGAACGTGGTTATGATCTACTGTACACACCACATGTGGCAAAAGCTGATCTTTGGAAGATCAGTGGTCATTTGGACTT CTACAAAGAGAATATGTATGATCAGATGAGCATTGAAGACGAACTTTATCAACTTCGACCTATGAATTGTCCTTATCATA TATTGGTATACAAAAGGAAGCTTCATTCATATCGGGATTTTCCTATTAGGGTCGCAGAATTGGGTACTGTTTATAGATAT GAACTGTCTGGAAGTTTACATGGCCTTTTCCGTGTTAGAGGTTTCACCCAGGATGACGCACACATATTTTGTTTAGATGA CCAGATTAAAGATGAGATCAGGGGCGTCCTAGATCTTACGGAACAAATATTGTTGCAGTTTGGCTTTGACAAATATGAAG TGAATTTGTCCACACGGCCTGAAAAATCTGTTGGAGATGATGATATTTGGGAAAAAGCTACCTCTGCTTTAAAAAATGCT TTGGATGATAAAGGTTGGACCTATCAAATTGATGATGGAGGAGGTGCCTTTTATGGGCCAAAGATCGATATCAAGATTGA GGATGCTCTTGGTAGGAAGTGGCAGTGTTCAACCATACAGGTTGATTTTAATTTACCACAGCGTTTTGACATTACATATG TTGACTCAAACACTGAAAAAAAGAGACCTATAATGATCCACAGAGCAGTGCTTGGATCCTTGGAAAGATTCTTTGGCGTT CTCATAGAGCATTATGCTGGTGATTTTCCATTATGGCTTTCTCCAGTACAAGCTCGAGTTTTACCTGTTACTGATGCCCA GCTTGAATACTGCAATGATGTGACCAACAAACTGAAAATGTATGGCATCCGAGCTGAAGTTTGTCATGGAGAGCGTCTGC CAAAGCTCATAAGAAATGCAGAGAAGCAGAAAATTCCATTGATGGCTGTTGTGGGCTCAAAGGAAGTTGAAACAGGAACA GTTACAGTTCGATCCAGATTTGGTGGGGAGCTTGGAACCATGTCAGTTGACGATTTTATCAACAGAATAAAGCTGGGAAC AGGAAATCAATCATCATTATGA
Protein sequence (LotjaGi6g1v0022700.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MSVDESESLLSHHHLLLSSLKMATFTVAIPTAFHFTTQTQAHSPSSIPLFKSSQRRFSSLLLSPPTKCHSTLAAVTADSS QPLAQPNPDPIVLPTNESSGTLLRIRHTCAHVMAMAVQKLYPHAKVTIGPWIENGFYYDFDMEPLTDKDLKRIKKEMDRI ISKNLPLVREEVSRDEAHRRIFALNEPYKMEILESIKEEPITIYHIGEEWWDLCAGPHVETTGNINKKAVELESIAGAYW RGDERKPMLQRIYGTAWENEEQLKAYLHFKEEAKRRDHRRLGQDLDLFSIQDDAGGGLVFWHPKGAIVRHIIEDFWKKIH IERGYDLLYTPHVAKADLWKISGHLDFYKENMYDQMSIEDELYQLRPMNCPYHILVYKRKLHSYRDFPIRVAELGTVYRY ELSGSLHGLFRVRGFTQDDAHIFCLDDQIKDEIRGVLDLTEQILLQFGFDKYEVNLSTRPEKSVGDDDIWEKATSALKNA LDDKGWTYQIDDGGGAFYGPKIDIKIEDALGRKWQCSTIQVDFNLPQRFDITYVDSNTEKKRPIMIHRAVLGSLERFFGV LIEHYAGDFPLWLSPVQARVLPVTDAQLEYCNDVTNKLKMYGIRAEVCHGERLPKLIRNAEKQKIPLMAVVGSKEVETGT VTVRSRFGGELGTMSVDDFINRIKLGTGNQSSL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 90 | 670 | 581 | 0.0 | ||
| PANTHER | 90 | 670 | 581 | 0.0 | – | |
| Hamap | 100 | 669 | 570 | 33.787 | ||
| SUPERFAMILY | 102 | 275 | 174 | 6.54E-57 | ||
| Gene3D | 104 | 256 | 153 | 6.9E-59 | – | |
| TIGRFAM | 106 | 664 | 559 | 1.3E-223 | ||
| Gene3D | 163 | 219 | 57 | 6.9E-59 | – | |
| Pfam | 201 | 253 | 53 | 6.1E-12 | ||
| SMART | 201 | 253 | 53 | 4.3E-20 | ||
| Gene3D | 257 | 567 | 311 | 2.1E-126 | – | |
| SUPERFAMILY | 277 | 562 | 286 | 1.51E-93 | – | |
| CDD | 277 | 575 | 299 | 0.0 | ||
| ProSiteProfiles | 301 | 582 | 282 | 24.371 | ||
| Pfam | 359 | 565 | 207 | 3.2E-42 | ||
| PRINTS | 365 | 393 | 29 | 4.4E-53 | ||
| PRINTS | 398 | 421 | 24 | 4.4E-53 | ||
| PRINTS | 500 | 528 | 29 | 4.4E-53 | ||
| PRINTS | 543 | 556 | 14 | 4.4E-53 | ||
| SUPERFAMILY | 563 | 664 | 102 | 1.81E-26 | – | |
| Gene3D | 568 | 671 | 104 | 8.7E-31 | ||
| PRINTS | 570 | 582 | 13 | 4.4E-53 | ||
| CDD | 575 | 664 | 90 | 5.3943E-35 | – | |
| Pfam | 577 | 664 | 88 | 3.9E-18 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Threonine-tRNA ligase activity | Catalysis of the reaction: ATP + L-threonine + tRNA(Thr) = AMP + diphosphate + L-threonyl-tRNA(Thr). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | TRNA aminoacylation for protein translation | The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, to be used in ribosome-mediated polypeptide synthesis. | ||
| Biological process | Threonyl-tRNA aminoacylation | The process of coupling threonine to threonyl-tRNA, catalyzed by threonyl-tRNA synthetase. The threonyl-tRNA synthetase is a class-II synthetase. The activated amino acid is transferred to the 3'-OH group of a threonine-accetping tRNA. | ||
| Biological process | TRNA aminoacylation | The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules. |
Expression pattern of LotjaGi6g1v0022700.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
Loading expression data from ljgea-geneid. Please wait…