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| Field | Value |
|---|---|
| Gene ID | Lj1g3v3330180 |
| Transcript ID | Lj1g3v3330180.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: probable alanyl-tRNA synthetase, chloroplastic-like [Glycine max] gi|356516209|ref|XP_003526788.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Hamap | 69 | 973 | 905 | 31.732 | ||
| PANTHER | 72 | 972 | 901 | 0 | – | |
| PANTHER | 72 | 972 | 901 | 0 | – | |
| ProSiteProfiles | 77 | 799 | 723 | 117.817 | ||
| Hamap | 78 | 971 | 894 | 159.331 | ||
| Gene3D | 78 | 309 | 232 | 1.50E-98 | – | |
| SUPERFAMILY | 79 | 313 | 235 | 9.44E-94 | – | |
| CDD | 80 | 309 | 230 | 1.72E-128 | – | |
| TIGRFAM | 82 | 950 | 869 | 9.70E-293 | ||
| Pfam | 82 | 644 | 563 | 2.50E-190 | ||
| PRINTS | 145 | 156 | 12 | 2.30E-27 | ||
| PRINTS | 267 | 278 | 12 | 2.30E-27 | ||
| PRINTS | 294 | 307 | 14 | 2.30E-27 | ||
| SUPERFAMILY | 314 | 522 | 209 | 7.06E-47 | ||
| PRINTS | 345 | 361 | 17 | 2.30E-27 | ||
| PRINTS | 369 | 382 | 14 | 2.30E-27 | ||
| SUPERFAMILY | 537 | 642 | 106 | 2.47E-18 | ||
| SUPERFAMILY | 642 | 800 | 159 | 4.58E-42 | ||
| SMART | 743 | 786 | 44 | 4.50E-19 | ||
| Pfam | 743 | 786 | 44 | 2.50E-17 | ||
| Coils | 822 | 842 | 21 | – | – | |
| Pfam | 895 | 964 | 70 | 1.10E-13 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleotide binding | Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | Aminoacyl-tRNA ligase activity | Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP. | ||
| Molecular function | Alanine-tRNA ligase activity | Catalysis of the reaction: ATP + L-alanine + tRNA(Ala) = AMP + diphosphate + L-alanyl-tRNA(Ala). | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Alanyl-tRNA aminoacylation | The process of coupling alanine to alanyl-tRNA, catalyzed by alanyl-tRNA synthetase. The alanyl-tRNA synthetase is a class-II synthetases. The activated amino acid is transferred to the 3'-OH group of an alanine accetping tRNA. | ||
| Cellular component | Chloroplast | A chlorophyll-containing plastid with thylakoids organized into grana and frets, or stroma thylakoids, and embedded in a stroma. | ||
| Biological process | TRNA aminoacylation | The chemical reactions and pathways by which the various amino acids become bonded to their corresponding tRNAs. The most common route for synthesis of aminoacyl tRNA is by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA and the alpha carboxylic acid group of an amino acid, usually catalyzed by the cognate aminoacyl-tRNA ligase. A given aminoacyl-tRNA ligase aminoacylates all species of an isoaccepting group of tRNA molecules. |
Expression pattern of Lj1g3v3330180.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj1g3v3330180.2, powered by CORGI.
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