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LotjaGi4g1v0341800.2

Overview

Field Value
Gene ID LotjaGi4g1v0341800
Transcript ID LotjaGi4g1v0341800.2
Related isoforms 1
Lotus japonicus genome version Gifu v1.2
Description Alanine--tRNA ligase; TAIR: AT3G16565.2 threonyl and alanyl tRNA synthetase second additional domain-containing protein; Swiss-Prot: sp|O57734|ALAXL_PYRHO Alanyl-tRNA editing protein AlaX-L; TrEMBL-Plants: tr|I3T4Y8|I3T4Y8_LOTJA Uncharacterized protein; Found in the gene: LotjaGi4g1v0341800
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr4:72154039..72156499) extracted from Lotus japonicus Gifu genome v1.2.

GAGGACATGGATAAGAACCCCACGAAGCTGGATTACTATGATGACATGTGGATGCTTCAATCCACTGCCACACTCCTTTC TCACTTCAAGGTTTGCTTCATTTTTTTGAGAAATTGTAGGAATGATTGAAGGGTCAGAAAAATTAGGAAAATAGAGTTAG CTATAATCATGGTTTATCTAATTTCTTAAGTAATTTTTTTTTTGTTTTTTTTTTGGGATGGTAAATGTGTGAATAGGGAG ATGATGGAAGACATGCTTTGATATTGGATAGAACAATTTTCTATCCGCAAGGAGGTGGTCAGCCAGCAGACACTGGTTTC ATATGCATTGAAGGTTCAGACATCAAGTTTGTGGTTCATGATGTTCGATCAAAAGATGGAATTGTAAGTTTTGGATCATA AAGAAAAAGTTTTAAGCTTTTATGGTGTTAACTATTATGCTTAACATTGTAGTGGTTACCATTATGTTTTTATTTTCTGT GCAGGTTTTTCACTATGGTGACTTTGAGAATCTGGGAGGGGAAGTTGAGCTCACACTCGAGAAAGGGAAGGAGGTTTCAC TGTTTGTTGATGAATCCAGGAGGAAACTGAATTCTAGGTAGAAAAAATTGCAAATGATGAAATTTTCAATCTTTTTTGAA GTGGTAGTGGGTAGTGGGTACTGCTTTTTTGAAGGTAGCCTTTTTAAGAATTAGTGGTTATTAAAATTGTTTCATGGAAA TCCTATTGCTACGCACTAAACACTGCACTCAAAATAGAGTTTTGATTTGCTTTCACTGCAATTGAAAAAACTTTACCTTC TGAGCTTAATTTATGCCCTGCTTTTCCCTTGTTGATCATATGATAGTACCAACTTTTTAATCAATGGTTTTATAAGAAGG GCTTTATAGCCTTGATTTAATTTCAACTAGGCTGTTCTTAAACTCTCTTCTAAATGTATGATATTGATCTCTATACGCTT ATAAAAAAATTGTAATGCTGCTTCTACAGATCCCATTCTCTACTTGTTCTTTATTGTGTAGGTTGCATTCAGCTGGGCAT TTGCTTGATATTTGTCTGCCAAGAATAGGATTGGGTCACTTAGAGCCTGGCAAAGCTTACCATTTTGCTGATGGGTATAT CATTTACTTGCTTTGAATGCATTTTATGTGCTGTGTATTTAACACTAGCTACGAACACATAACCTGAAATGAATTGAAAC TTGAAAGCGATTTCTTAGTTTATTATCCCAGGTCAAGGGCAATGTTGCATCTGTCAAACCATTGCAAATCTAGGATAGTG TTAACCATCATTGAGTGTAGTTATTATTATTATTATAAATAAAACAAACCCTTAAATTGGTCCACCAAAGATACAAAATA GTTATCAAATTCACCCTTTGTGTCACCTCTATAGTCCTTTATAAGAATGAATATGGCGCAATAATAGATCTTTTAGGGAA TTACATGCTGAGAAAAGCTTTGAAGGACCAATTTAGGGATTTAATCGAAGAAAGGTGTACAACCTTGAGTACTCTCCTAC TATTGTCGAACATTCTATTTATCTGCGAGTTGCAAAGATTGTTTCACACGTCTATTACATTGTTTTCTAGGCCTTGGGTT GAATATAAAGGTGTAATTCCACAAAATGAAATTCAGAATAAGCAGAAGGATTTAGAGCTAGAGGCTAATGCTTTAATTTC CGTGGGAGGAAAAGTAAGTGACAATGTTCATAAATTGTTTTTACATGTTGCTTATGGTTCTGAAAACCTTCACTTTGCTA TTTAGGTTTCTGCTGATATATTATTGTATGATGAAGCTGCTAAGCTCTGTGGTGGTTGTCTTCCTGATTATGTTCCCAAG GTTAGTCTATAAAAGATATACGCTTACTGCAAATAAGAAAGATTGCTGACAAGAAAAAGGAGGATAAATCAGTAATCTAC TAGGTTACAGTGTTCACTCTCCTATGCTTAAAATGTTTCCTAATGTCTAACTTTGTAATCTAACAAGGTGCCTTCCTGTT TCTTTGTTGTAAAACATGTTTGCTTTCATTCAGGATAAATCAGTAAACTTATGTTGGAAACTGGTGAAATCTTTTGAAAT GGCTAACTGAGAGCATTCCTAATTTCACAATTATATGCATTATATGCTTGTATATGTATCAAAGGATATGAAAAAATATT CATTTTTATCTCTTGTTTTGTTCTTTTTTATTTTTGTGAACCATAGTATATGTGATGTTAACACATCAACTCTCACAGGA AAGCACACCTCGCATTGTGACGATAGGAGGTAATCCAGGCTGCCCCTGCGGTGGTACCCATGTTGCTGATATCTCAGACA TCATACAAATTAAGGTGTGAAATCCATTTACTAACCCCGCTCACCTGGGTGGATTTGATTATTTTGATGATAGTTTGCTC TTAGTAATTCATTCATTACATGAAATCATTTTCTTGAAGATGTTGGAATGAAAACTTATAG
Download Genomic Sequence

CDS sequence (LotjaGi4g1v0341800.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGGATAAGAACCCCACGAAGCTGGATTACTATGATGACATGTGGATGCTTCAATCCACTGCCACACTCCTTTCTCACTT CAAGGGAGATGATGGAAGACATGCTTTGATATTGGATAGAACAATTTTCTATCCGCAAGGAGGTGGTCAGCCAGCAGACA CTGGTTTCATATGCATTGAAGGTTCAGACATCAAGTTTGTGGTTCATGATGTTCGATCAAAAGATGGAATTGTTTTTCAC TATGGTGACTTTGAGAATCTGGGAGGGGAAGTTGAGCTCACACTCGAGAAAGGGAAGGAGGTTTCACTGTTTGTTGATGA ATCCAGGAGGAAACTGAATTCTAGGTTGCATTCAGCTGGGCATTTGCTTGATATTTGTCTGCCAAGAATAGGATTGGGTC ACTTAGAGCCTGGCAAAGCTTACCATTTTGCTGATGGGCCTTGGGTTGAATATAAAGGTGTAATTCCACAAAATGAAATT CAGAATAAGCAGAAGGATTTAGAGCTAGAGGCTAATGCTTTAATTTCCGTGGGAGGAAAAGTTTCTGCTGATATATTATT GTATGATGAAGCTGCTAAGCTCTGTGGTGGTTGTCTTCCTGATTATGTTCCCAAGGAAAGCACACCTCGCATTGTGACGA TAGGAGGTAATCCAGGCTGCCCCTGCGGTGGTACCCATGTTGCTGATATCTCAGACATCATACAAATTAAGGTGTGA
Download CDS Sequence

Protein sequence (LotjaGi4g1v0341800.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MDKNPTKLDYYDDMWMLQSTATLLSHFKGDDGRHALILDRTIFYPQGGGQPADTGFICIEGSDIKFVVHDVRSKDGIVFH YGDFENLGGEVELTLEKGKEVSLFVDESRRKLNSRLHSAGHLLDICLPRIGLGHLEPGKAYHFADGPWVEYKGVIPQNEI QNKQKDLELEANALISVGGKVSADILLYDEAAKLCGGCLPDYVPKESTPRIVTIGGNPGCPCGGTHVADISDIIQIKV
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR43462
1 238 238 2.2E-105 –
PANTHER
PTHR43462:SF2
1 238 238 2.2E-105 –
Gene3D
G3DSA:2.40.30.130
1 95 95 1.0E-19 –
ProSiteProfiles
PS50860
1 238 238 15.058
IPR018165
SUPERFAMILY
SSF50447
5 85 81 1.77E-16
IPR009000
Pfam
PF01411
33 108 76 3.0E-12
IPR018164
Gene3D
G3DSA:3.30.980.10
106 238 133 5.2E-18 –
SUPERFAMILY
SSF55186
106 238 133 2.75E-18
IPR018163

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0000166
Molecular function Nucleotide binding Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
Subterm of
GO:0003676
Molecular function Nucleic acid binding Interacting selectively and non-covalently with any nucleic acid.
Subterm of
GO:0004813
Molecular function Alanine-tRNA ligase activity Catalysis of the reaction: ATP + L-alanine + tRNA(Ala) = AMP + diphosphate + L-alanyl-tRNA(Ala).
Subterm of
GO:0005524
Molecular function ATP binding Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
Subterm of
GO:0006419
Biological process Alanyl-tRNA aminoacylation The process of coupling alanine to alanyl-tRNA, catalyzed by alanyl-tRNA synthetase. The alanyl-tRNA synthetase is a class-II synthetases. The activated amino acid is transferred to the 3'-OH group of an alanine accetping tRNA.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi4g1v0341800.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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