TrEx

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Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

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We have found 24 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.251s to perform.

Transcript	Name	Description	Chr	Start	End	Strand	Domain predictions	GO predictions
Lj0g3v0329179.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	LIM and UIM domain-containing [Medicago truncatula] gi\|357461021\|ref\|XP_003600792.1\|	chr0	172091698	172096758	-	2 domain predictions IPR022087 PF12315	–
Lj2g3v1828370.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	PREDICTED: protein DA1-related 1-like isoform 1 [Glycine max] gi\|356496814\|ref\|XP_003517260.1\|	chr2	27412166	27418801	-	2 domain predictions IPR022087 PF12315	–
Lj2g3v2661480.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	LIM and UIM domain-containing [Medicago truncatula] gi\|357492437\|ref\|XP_003616507.1\|	chr2	35855315	35860767	+	2 domain predictions IPR022087 PF12315	–
Lj4g3v0911400.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	PREDICTED: protein DA1-related 1-like isoform X1 [Cicer arietinum] gi\|502153131\|ref\|XP_004509228.1\|	chr4	13575774	13582226	+	2 domain predictions IPR022087 PF12315	–
Lj4g3v0914500.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	PREDICTED: protein DA1-related 1-like isoform X1 [Cicer arietinum] gi\|502153131\|ref\|XP_004509228.1\|	chr4	13621065	13622632	-	2 domain predictions IPR022087 PF12315	–
Lj4g3v0914500.2 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	PREDICTED: protein DA1-related 1-like isoform X1 [Cicer arietinum] gi\|502153131\|ref\|XP_004509228.1\|	chr4	13621065	13627517	-	2 domain predictions IPR022087 PF12315	–
Lj5g3v0083000.1 View gene View transcript LORE1 v3.0 Genomic sequence Coding sequence mRNA sequence Protein sequence Genome browser Expression Atlas (ExpAt)	n.a.	PREDICTED: protein DA1-like isoform X1 [Cicer arietinum] gi\|502125921\|ref\|XP_004499115.1\|	chr5	461619	469718	+	2 domain predictions IPR022087 PF12315	–
LotjaGi1g1v0085900.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Protein DA1-related 1; TAIR: AT2G39830.1 DA1-related protein 2; Swiss-Prot: sp\|Q0WSN2\|DAR2_ARATH Protein DA1-related 2; TrEMBL-Plants: tr\|V7B7H4\|V7B7H4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0085900	LjG1.1_chr1	12431632	12440031	-	2 domain predictions IPR022087 PF12315	–
LotjaGi1g1v0085900.2 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Protein DA1-related 1; TAIR: AT2G39830.1 DA1-related protein 2; Swiss-Prot: sp\|Q0WSN2\|DAR2_ARATH Protein DA1-related 2; TrEMBL-Plants: tr\|K7KAN7\|K7KAN7_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0085900	LjG1.1_chr1	12434842	12439100	-	2 domain predictions IPR022087 PF12315	–
LotjaGi1g1v0085900.3 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Protein DA1-related 1; TAIR: AT2G39830.1 DA1-related protein 2; Swiss-Prot: sp\|Q0WSN2\|DAR2_ARATH Protein DA1-related 2; TrEMBL-Plants: tr\|A0A0S3RKQ0\|A0A0S3RKQ0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0085900	LjG1.1_chr1	12434873	12438851	-	2 domain predictions IPR022087 PF12315	–
LotjaGi1g1v0085900.4 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Protein DA1-related 1; TAIR: AT2G39830.1 DA1-related protein 2; Swiss-Prot: sp\|Q0WSN2\|DAR2_ARATH Protein DA1-related 2; TrEMBL-Plants: tr\|A0A0S3RKQ0\|A0A0S3RKQ0_PHAAN Uncharacterized protein; Found in the gene: LotjaGi1g1v0085900	LjG1.1_chr1	12434873	12438997	-	2 domain predictions IPR022087 PF12315	–
LotjaGi2g1v0395000.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Protein DA1-related 1; TAIR: AT4G36860.1 LIM domain-containing protein; Swiss-Prot: sp\|Q8W4F0\|DAR1_ARATH Protein DA1-related 1; TrEMBL-Plants: tr\|A0A0B2RSU7\|A0A0B2RSU7_GLYSO DA-related 1 protein 1; Found in the gene: LotjaGi2g1v0395000	LjG1.1_chr2	89256379	89263288	-	2 domain predictions IPR022087 PF12315	–
LotjaGi2g1v0395000.2 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Protein DA1-related 1; TAIR: AT4G36860.1 LIM domain-containing protein; Swiss-Prot: sp\|Q8W4F0\|DAR1_ARATH Protein DA1-related 1; TrEMBL-Plants: tr\|I3SU25\|I3SU25_LOTJA Uncharacterized protein; Found in the gene: LotjaGi2g1v0395000	LjG1.1_chr2	89256784	89257423	-	2 domain predictions IPR022087 PF12315	–
LotjaGi2g1v0395000.3 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Protein DA1-related 1; TAIR: AT4G36860.1 LIM domain-containing protein; Swiss-Prot: sp\|Q8W4F0\|DAR1_ARATH Protein DA1-related 1; TrEMBL-Plants: tr\|A0A0G2UMG5\|A0A0G2UMG5_GLYSO DA-related 1 protein 4; Found in the gene: LotjaGi2g1v0395000	LjG1.1_chr2	89256784	89262059	-	2 domain predictions IPR022087 PF12315	–
LotjaGi2g1v0395000.4 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Protein DA1-related 1; TAIR: AT4G36860.1 LIM domain-containing protein; Swiss-Prot: sp\|Q8W4F0\|DAR1_ARATH Protein DA1-related 1; TrEMBL-Plants: tr\|A0A0G2UMG5\|A0A0G2UMG5_GLYSO DA-related 1 protein 4; Found in the gene: LotjaGi2g1v0395000	LjG1.1_chr2	89256784	89262269	-	2 domain predictions IPR022087 PF12315	–
LotjaGi4g1v0114100.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Protein DA1-related 1; TAIR: AT4G36860.1 LIM domain-containing protein; Swiss-Prot: sp\|Q8W4F0\|DAR1_ARATH Protein DA1-related 1; TrEMBL-Plants: tr\|K7K6P3\|K7K6P3_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0114100	LjG1.1_chr4	16504627	16511792	+	2 domain predictions IPR022087 PF12315	–
LotjaGi5g1v0019700.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Protein DA1-related 1; TAIR: AT1G19270.1 DA1; Swiss-Prot: sp\|P0C7Q8\|DA1_ARATH Protein DA1; TrEMBL-Plants: tr\|A0A151RWT7\|A0A151RWT7_CAJCA LIM and UIM domain-containing family; Found in the gene: LotjaGi5g1v0019700	LjG1.1_chr5	3724701	3735033	-	2 domain predictions IPR022087 PF12315	–
LotjaGi5g1v0019700.2 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Protein DA1-related 1; TAIR: AT1G19270.1 DA1; Swiss-Prot: sp\|P0C7Q8\|DA1_ARATH Protein DA1; TrEMBL-Plants: tr\|A0A0L9TTM7\|A0A0L9TTM7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0019700	LjG1.1_chr5	3725807	3733969	-	2 domain predictions IPR022087 PF12315	–
LotjaGi5g1v0019700.3 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Protein DA1-related 1; TAIR: AT1G19270.1 DA1; Swiss-Prot: sp\|P0C7Q8\|DA1_ARATH Protein DA1; TrEMBL-Plants: tr\|A0A151RWT7\|A0A151RWT7_CAJCA LIM and UIM domain-containing family; Found in the gene: LotjaGi5g1v0019700	LjG1.1_chr5	3725807	3733969	-	2 domain predictions IPR022087 PF12315	–
LotjaGi6g1v0066100.1 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Protein DA1-related 1; TAIR: AT2G39830.3 DA1-related protein 2; Swiss-Prot: sp\|Q0WSN2\|DAR2_ARATH Protein DA1-related 2; TrEMBL-Plants: tr\|A0A0G2UMC1\|A0A0G2UMC1_GLYSO DA-related 1 protein 11; Found in the gene: LotjaGi6g1v0066100	LjG1.1_chr6	12556780	12567797	-	2 domain predictions IPR022087 PF12315	–
LotjaGi6g1v0066100.2 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Protein DA1-related 1; TAIR: AT2G39830.1 DA1-related protein 2; Swiss-Prot: sp\|Q0WSN2\|DAR2_ARATH Protein DA1-related 2; TrEMBL-Plants: tr\|G7JA19\|G7JA19_MEDTR Zinc ion-binding protein; Found in the gene: LotjaGi6g1v0066100	LjG1.1_chr6	12556780	12567797	-	2 domain predictions IPR022087 PF12315	–
LotjaGi6g1v0066100.3 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Protein DA1-related 1; TAIR: AT2G39830.1 DA1-related protein 2; Swiss-Prot: sp\|Q0WSN2\|DAR2_ARATH Protein DA1-related 2; TrEMBL-Plants: tr\|G7JA19\|G7JA19_MEDTR Zinc ion-binding protein; Found in the gene: LotjaGi6g1v0066100	LjG1.1_chr6	12556780	12567797	-	2 domain predictions IPR022087 PF12315	–
LotjaGi6g1v0066100.4 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Protein DA1-related 1; TAIR: AT2G39830.1 DA1-related protein 2; Swiss-Prot: sp\|Q0WSN2\|DAR2_ARATH Protein DA1-related 2; TrEMBL-Plants: tr\|G7JA19\|G7JA19_MEDTR Zinc ion-binding protein; Found in the gene: LotjaGi6g1v0066100	LjG1.1_chr6	12556780	12567797	-	2 domain predictions IPR022087 PF12315	–
LotjaGi6g1v0066100.5 View gene View transcript Genomic sequence Coding sequence Protein sequence Genome browser	n.a.	Protein DA1-related 1; TAIR: AT2G39830.1 DA1-related protein 2; Swiss-Prot: sp\|Q0WSN2\|DAR2_ARATH Protein DA1-related 2; TrEMBL-Plants: tr\|G7JA19\|G7JA19_MEDTR Zinc ion-binding protein; Found in the gene: LotjaGi6g1v0066100	LjG1.1_chr6	12562080	12567691	-	2 domain predictions IPR022087 PF12315	–