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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR022702
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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Download the entire search result as a CSV file.

We have found 11 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 8.945s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0328459.1
n.a. DNA (cytosine-5)-methyltransferase [Medicago truncatula] gi|357498929|ref|XP_003619753.1| chr0 171683907 171690450 -
2 domain predictions
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Lj0g3v0328469.1
n.a. PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Cicer arietinum] gi|502162869|ref|XP_004512642.1| chr0 171690543 171693193 -
2 domain predictions
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Lj2g3v3224280.2
n.a. enhanced downy mildew 2 [Arabidopsis thaliana] gi|145359280|ref|NP_200350.2| chr2 41248421 41253345 -
2 domain predictions
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Lj3g3v1010970.1
n.a. DNA (cytosine-5)-methyltransferase [Medicago truncatula] gi|357498929|ref|XP_003619753.1| chr3 13419823 13429104 +
2 domain predictions
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Lj3g3v1010980.1
n.a. n.a. chr3 13421863 13425307 -
2 domain predictions
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LotjaGi1g1v0022500_LC.1
n.a. Enhanced downy mildew 2, putative; TAIR: AT5G55390.1 ENHANCED DOWNY MILDEW 2; Swiss-Prot: sp|F4K3G5|EDM2_ARATH Protein ENHANCED DOWNY MILDEW 2; TrEMBL-Plants: tr|K7KBJ1|K7KBJ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0022500_LC LjG1.1_chr1 2762138 2769303 +
2 domain predictions
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LotjaGi2g1v0168300.1
n.a. Cytosine-specific methyltransferase; TAIR: AT5G49160.1 methyltransferase 1; Swiss-Prot: sp|P34881|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1; TrEMBL-Plants: tr|I1JXB2|I1JXB2_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi2g1v0168300 LjG1.1_chr2 58002009 58012129 -
2 domain predictions
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LotjaGi2g1v0168300.3
n.a. Cytosine-specific methyltransferase; TAIR: AT5G49160.1 methyltransferase 1; Swiss-Prot: sp|P34881|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1; TrEMBL-Plants: tr|I1KCC0|I1KCC0_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi2g1v0168300 LjG1.1_chr2 58002301 58010031 -
2 domain predictions
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LotjaGi3g1v0150100.1
n.a. Cytosine-specific methyltransferase; TAIR: AT5G49160.1 methyltransferase 1; Swiss-Prot: sp|P34881|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1; TrEMBL-Plants: tr|I1JXB2|I1JXB2_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi3g1v0150100 LjG1.1_chr3 20184856 20194392 +
2 domain predictions
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LotjaGi3g1v0150100.2
n.a. Cytosine-specific methyltransferase; TAIR: AT5G49160.1 methyltransferase 1; Swiss-Prot: sp|P34881|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1; TrEMBL-Plants: tr|I1KCC0|I1KCC0_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi3g1v0150100 LjG1.1_chr3 20186894 20193865 +
2 domain predictions
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LotjaGi6g1v0152000.1
n.a. Enhanced downy mildew 2, putative; TAIR: AT5G55390.1 ENHANCED DOWNY MILDEW 2; Swiss-Prot: sp|F4K3G5|EDM2_ARATH Protein ENHANCED DOWNY MILDEW 2; TrEMBL-Plants: tr|A0A0B2R910|A0A0B2R910_GLYSO PHD finger-containing protein; Found in the gene: LotjaGi6g1v0152000 LjG1.1_chr6 42892643 42905448 +
2 domain predictions
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