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| Field | Value |
|---|---|
| Gene ID | Lj3g3v1010970 |
| Transcript ID | Lj3g3v1010970.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | DNA (cytosine-5)-methyltransferase [Medicago truncatula] gi|357498929|ref|XP_003619753.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 1 | 49 | 49 | – | – | |
| Pfam | 93 | 227 | 135 | 9.90E-38 | ||
| PANTHER | 148 | 271 | 124 | 0 | – | |
| PANTHER | 148 | 271 | 124 | 0 | – | |
| PANTHER | 337 | 993 | 657 | 0 | – | |
| PANTHER | 337 | 993 | 657 | 0 | – | |
| Pfam | 400 | 553 | 154 | 1.50E-40 | ||
| MobiDBLite | 449 | 468 | 20 | – | – | |
| MobiDBLite | 662 | 715 | 54 | – | – | |
| Coils | 675 | 695 | 21 | – | – | |
| CDD | 742 | 880 | 139 | 1.28E-37 | – | |
| ProSiteProfiles | 745 | 879 | 135 | 12.668 | ||
| SMART | 745 | 879 | 135 | 9.80E-44 | ||
| Pfam | 747 | 879 | 133 | 7.20E-19 | ||
| CDD | 914 | 1115 | 202 | 7.34E-97 | – | |
| ProSiteProfiles | 919 | 1058 | 140 | 17.84 | ||
| SMART | 919 | 1058 | 140 | 8.70E-40 | ||
| Pfam | 920 | 1057 | 138 | 3.20E-20 | ||
| PANTHER | 1028 | 1537 | 510 | 0 | – | |
| PANTHER | 1028 | 1537 | 510 | 0 | – | |
| Gene3D | 1098 | 1163 | 66 | 1.60E-56 | ||
| ProSiteProfiles | 1103 | 1537 | 435 | 54.544 | ||
| PRINTS | 1104 | 1120 | 17 | 6.80E-14 | ||
| Pfam | 1105 | 1531 | 427 | 1.60E-47 | ||
| SUPERFAMILY | 1105 | 1162 | 58 | 1.91E-80 | ||
| TIGRFAM | 1106 | 1529 | 424 | 3.80E-38 | ||
| Gene3D | 1197 | 1379 | 183 | 1.60E-56 | ||
| SUPERFAMILY | 1197 | 1314 | 118 | 1.91E-80 | ||
| ProSitePatterns | 1200 | 1212 | 13 | – | ||
| PRINTS | 1241 | 1255 | 15 | 6.80E-14 | ||
| PRINTS | 1287 | 1300 | 14 | 6.80E-14 | ||
| SUPERFAMILY | 1344 | 1532 | 189 | 1.91E-80 | ||
| Gene3D | 1479 | 1518 | 40 | 2.10E-06 | – | |
| ProSitePatterns | 1512 | 1530 | 19 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Chromatin binding | Interacting selectively and non-covalently with chromatin, the network of fibers of DNA, protein, and sometimes RNA, that make up the chromosomes of the eukaryotic nucleus during interphase. | ||
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of Lj3g3v1010970.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj3g3v1010970.1, powered by CORGI.
Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.