Domain Predictions — View

Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

PF12047

Source: Pfam

Description

Cytosine specific DNA methyltransferase replication foci domain

Associated GO terms

Unable to find any GO terms for the transcript with the identifier.

Associated Lotus transcripts 11

Transcript	Name	Description	Predicted domains	Domain count
Lj0g3v0328459.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA (cytosine-5)-methyltransferase [Medicago truncatula] gi\|357498929\|ref\|XP_003619753.1\|	Domains IPR001025 IPR022702 PF01426 PF12047 PS51038 PTHR10629 PTHR10629:SF11 SM00439 cd04712 mobidb-lite	10
Lj0g3v0328469.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	PREDICTED: DNA (cytosine-5)-methyltransferase 1-like [Cicer arietinum] gi\|502162869\|ref\|XP_004512642.1\|	Domains IPR022702 PF12047 PTHR10629 PTHR10629:SF36 mobidb-lite	5
Lj2g3v3224280.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Enhanced downy mildew 2 [Arabidopsis thaliana] gi\|145359280\|ref\|NP_200350.2\|	Domains G3DSA:3.30.40.10 IPR001965 IPR011011 IPR013083 IPR022702 PF12047 PTHR22884 PTHR22884:SF340 SM00249 SSF57903	10
Lj3g3v1010970.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	DNA (cytosine-5)-methyltransferase [Medicago truncatula] gi\|357498929\|ref\|XP_003619753.1\|	Domains Coil G3DSA:3.40.50.150 G3DSA:3.90.120.10 IPR001025 IPR001525 IPR018117 IPR022702 IPR029063 IPR031303 PF00145 PF01426 PF12047 PR00105 PS00094 PS00095 PS51038 PS51679 PTHR10629 PTHR10629:SF36 SM00439 SSF53335 TIGR00675 cd04708 cd04712 mobidb-lite	25
Lj3g3v1010980.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–		Domains Coil IPR001025 IPR022702 PF01426 PF12047 PS51038 PTHR10629 PTHR10629:SF11 SM00439 cd04712 mobidb-lite	11
LotjaGi1g1v0022500_LC.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Enhanced downy mildew 2, putative; TAIR: AT5G55390.1 ENHANCED DOWNY MILDEW 2; Swiss-Prot: sp\|F4K3G5\|EDM2_ARATH Protein ENHANCED DOWNY MILDEW 2; TrEMBL-Plants: tr\|K7KBJ1\|K7KBJ1_SOYBN Uncharacterized protein; Found in the gene: LotjaGi1g1v0022500_LC	Domains Coil G3DSA:3.30.40.10 IPR001965 IPR011011 IPR013083 IPR022702 PF12047 PTHR46235 PTHR46235:SF9 SM00249 SSF57903 cd15565 cd15566 mobidb-lite	14
LotjaGi2g1v0168300.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT5G49160.1 methyltransferase 1; Swiss-Prot: sp\|P34881\|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1; TrEMBL-Plants: tr\|I1JXB2\|I1JXB2_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi2g1v0168300	Domains Coil G3DSA:2.30.30.490 G3DSA:3.40.50.150 G3DSA:3.90.120.20 IPR001025 IPR001525 IPR017198 IPR018117 IPR022702 IPR029063 IPR031303 IPR043151 PF00145 PF01426 PF12047 PIRSF037404 PR00105 PS00094 PS00095 PS51038 PS51679 PTHR10629 PTHR10629:SF48 SM00439 SSF53335 TIGR00675 cd04708 cd04712 mobidb-lite	29
LotjaGi2g1v0168300.3 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT5G49160.1 methyltransferase 1; Swiss-Prot: sp\|P34881\|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1; TrEMBL-Plants: tr\|I1KCC0\|I1KCC0_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi2g1v0168300	Domains Coil G3DSA:2.30.30.490 G3DSA:3.40.50.150 G3DSA:3.90.120.20 IPR001025 IPR001525 IPR017198 IPR018117 IPR022702 IPR029063 IPR031303 IPR043151 PF00145 PF01426 PF12047 PIRSF037404 PR00105 PS00094 PS00095 PS51038 PS51679 PTHR10629 PTHR10629:SF48 SM00439 SSF53335 TIGR00675 cd04708 cd04712 mobidb-lite	29
LotjaGi3g1v0150100.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT5G49160.1 methyltransferase 1; Swiss-Prot: sp\|P34881\|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1; TrEMBL-Plants: tr\|I1JXB2\|I1JXB2_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi3g1v0150100	Domains Coil G3DSA:2.30.30.490 G3DSA:3.40.50.150 G3DSA:3.90.120.20 IPR001025 IPR001525 IPR017198 IPR018117 IPR022702 IPR029063 IPR031303 IPR043151 PF00145 PF01426 PF12047 PIRSF037404 PR00105 PS00094 PS00095 PS51038 PS51679 PTHR10629 PTHR10629:SF48 SM00439 SSF53335 TIGR00675 cd04708 cd04712 mobidb-lite	29
LotjaGi3g1v0150100.2 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Cytosine-specific methyltransferase; TAIR: AT5G49160.1 methyltransferase 1; Swiss-Prot: sp\|P34881\|DNMT1_ARATH DNA (cytosine-5)-methyltransferase 1; TrEMBL-Plants: tr\|I1KCC0\|I1KCC0_SOYBN Cytosine-specific methyltransferase; Found in the gene: LotjaGi3g1v0150100	Domains Coil G3DSA:2.30.30.490 G3DSA:3.40.50.150 G3DSA:3.90.120.20 IPR001025 IPR001525 IPR017198 IPR018117 IPR022702 IPR029063 IPR031303 IPR043151 PF00145 PF01426 PF12047 PIRSF037404 PR00105 PS00094 PS00095 PS51038 PS51679 PTHR10629 PTHR10629:SF48 SM00439 SSF53335 TIGR00675 cd04708 cd04712 mobidb-lite	29
LotjaGi6g1v0152000.1 View transcript LORE1 v3.0 Genome browser Expression Atlas (ExpAt)	–	Enhanced downy mildew 2, putative; TAIR: AT5G55390.1 ENHANCED DOWNY MILDEW 2; Swiss-Prot: sp\|F4K3G5\|EDM2_ARATH Protein ENHANCED DOWNY MILDEW 2; TrEMBL-Plants: tr\|A0A0B2R910\|A0A0B2R910_GLYSO PHD finger-containing protein; Found in the gene: LotjaGi6g1v0152000	Domains G3DSA:3.30.40.10 IPR001965 IPR013083 IPR022702 PF12047 PTHR46235 PTHR46235:SF9 SM00249 cd15489 cd15565 mobidb-lite	11

Co-occuring domains 1

A list of co-occurring predicted domains within the L. japonicus gene space:

Predicted domain	Source	Observations	Saturation (%)
mobidb-lite	MobiDBLite	1	9.09