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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR023404
Separate each keyword, or gene/transcript ID, with a comma or tab. Spaces are not accepted as delimiters due to their potential use in boolean searches.
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We have found 12 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 5.424s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
Lj0g3v0131529.1
n.a. PREDICTED: oxygen-independent coproporphyrinogen-III oxidase-like protein sll1917-like [Cicer arietinum] gi|502133605|ref|XP_004501826.1| chr0 59839514 59841916 -
2 domain predictions
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Lj0g3v0285609.1
n.a. PREDICTED: elongator complex protein 3-like [Glycine max] gi|356508774|ref|XP_003523129.1| chr0 148259759 148264978 +
2 domain predictions
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Lj2g3v1728760.1
n.a. PREDICTED: CDK5RAP1-like protein-like [Glycine max] gi|356540793|ref|XP_003538869.1| chr2 26514805 26518129 +
2 domain predictions
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Lj3g3v3755420.1
n.a. PREDICTED: CDKAL1-like protein-like [Glycine max] gi|356542899|ref|XP_003539902.1| chr3 45515460 45522025 -
2 domain predictions
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LotjaGi1g1v0234800.1
n.a. Oxygen-independent coproporphyrinogen III oxidase, putative; TAIR: AT5G63290.1 Radical SAM superfamily protein; Swiss-Prot: sp|P73245|Y1917_SYNY3 Oxygen-independent coproporphyrinogen-III oxidase-like protein sll1917; TrEMBL-Plants: tr|V7AWC4|V7AWC4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0234800 LjG1.1_chr1 55476734 55479228 -
2 domain predictions
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LotjaGi1g1v0235100.1
n.a. Elongator complex protein 3; TAIR: AT5G50320.1 radical SAM domain-containing protein / GCN5-related N-acetyltransferase (GNAT) family protein; Swiss-Prot: sp|Q93ZR1|ELP3_ARATH Elongator complex protein 3; TrEMBL-Plants: tr|A0A151R7U7|A0A151R7U7_CAJCA Elongator complex protein 3; Found in the gene: LotjaGi1g1v0235100 LjG1.1_chr1 55491555 55497461 -
2 domain predictions
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LotjaGi2g1v0385400.1
n.a. tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; TAIR: AT4G36390.1 Methylthiotransferase; Swiss-Prot: sp|Q8H0V1|CK5P1_ARATH CDK5RAP1-like protein; TrEMBL-Plants: tr|G7KGB3|G7KGB3_MEDTR Radical SAM methylthiotransferase, MiaB/RimO family protein; Found in the gene: LotjaGi2g1v0385400 LjG1.1_chr2 88149599 88153156 +
2 domain predictions
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LotjaGi2g1v0385400.2
n.a. tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; TAIR: AT4G36390.1 Methylthiotransferase; Swiss-Prot: sp|Q2R1U4|CK5P1_ORYSJ CDK5RAP1-like protein; TrEMBL-Plants: tr|K7LNH5|K7LNH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0385400 LjG1.1_chr2 88150084 88152442 +
2 domain predictions
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LotjaGi2g1v0385400.3
n.a. tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; TAIR: AT4G36390.1 Methylthiotransferase; Swiss-Prot: sp|Q2R1U4|CK5P1_ORYSJ CDK5RAP1-like protein; TrEMBL-Plants: tr|K7LNH5|K7LNH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0385400 LjG1.1_chr2 88150089 88152442 +
2 domain predictions
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LotjaGi2g1v0385400.4
n.a. tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; TAIR: AT4G36390.1 Methylthiotransferase; Swiss-Prot: sp|Q2R1U4|CK5P1_ORYSJ CDK5RAP1-like protein; TrEMBL-Plants: tr|K7LNH5|K7LNH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0385400 LjG1.1_chr2 88150102 88152442 +
2 domain predictions
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LotjaGi3g1v0556600.1
n.a. tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; TAIR: AT1G72090.1 Methylthiotransferase; Swiss-Prot: sp|Q6P4Y0|CDKAL_XENTR Threonylcarbamoyladenosine tRNA methylthiotransferase; TrEMBL-Plants: tr|I1LNN6|I1LNN6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0556600 LjG1.1_chr3 97447998 97457163 -
2 domain predictions
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LotjaGi3g1v0556600.2
n.a. tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; TAIR: AT1G72090.1 Methylthiotransferase; Swiss-Prot: sp|Q6NS26|CDKAL_XENLA Threonylcarbamoyladenosine tRNA methylthiotransferase; TrEMBL-Plants: tr|I1LNN6|I1LNN6_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0556600 LjG1.1_chr3 97448097 97457171 -
2 domain predictions
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