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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0385400 |
| Transcript ID | LotjaGi2g1v0385400.2 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase; TAIR: AT4G36390.1 Methylthiotransferase; Swiss-Prot: sp|Q2R1U4|CK5P1_ORYSJ CDK5RAP1-like protein; TrEMBL-Plants: tr|K7LNH5|K7LNH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi2g1v0385400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:88150084..88152442) extracted from Lotus japonicus Gifu genome v1.2.
CAATGGAACTGCCTTCAAAATTTAATTTTTTTCTTCATTTGCATTCTGGGTATTTTTGCAAACACCCCCACTTTGTGGGA GAATAATACAAGAATATTCATAGGACAGATTAGAGAATGTTGAAAAACAGTGGATGAAATGAAACCAATCATTTATATTC TTTCAGCAATTTATATTCCCTTATGAATTTGTTGAACTACTGAGTTTAGGTTGGATTGATTAGGAGTGAAATGTCTTTAC TGGTTATTTATTTGTTTATTTTTTATTTGTGAGGTAGCCTTGTACTGGATACTGAAGTTCCGTCAACCGGTCGTGTATAT CATGAGACTTATGGATGTCAAATGAATGTTAATGACATGGAGATTGTCCTGTCTATAATGAAAAACGCTGGCTATAATGA AGTTGTGAGTGCTCCTGAGAGTGCAGAAATAATATTTATCAACACTTGTGCCATCAGAGAGAATGCGGAACTTAAAGTAT GGCAGAGGCTTAATTACTTTTGGTTTCTTAAGAGGAATTGGAAGGCCAATGTTGCTTCGGGAAGGGCTCAGTCCCTGCAC CCTCCGAAAGTAGTTGTCTTGGGCTGTATGGCTGAGAGGCTAAAGGAGAAGATACTTGATGCCGACAAAATGGTTGACGT CGTCTGCGGACCTGATGCATATAGGGATTTGCCGCGATTACTGGAAGAGGTTGACGACGGCCAGAAAGGAATCAACACTC TTCTTTCACTTGAGGAGACTTATGCTGATATTAATCCAGTTCGAATCTCCAAGAACTCGGTTTCCGCTTTTGTCTCCGTG ATGAGGGGTTGCAACAATATGTGCTCATTTTGTATTGTACCTTTCACTAGAGGCAGAGAGCGGTCACGTCCTGTGGAATC CATTGTGAGAGAGGTGGCAGAGCTGTGGAAAGAGGGTGTGAAAGAAGTAACACTTCTTGGCCAGAACGTGAACAGCTATA ATGATACATCTGGTTTTGAAAAAGAGGTTGAATCAGGATCCAATTGGAAACTTAGTGATGGATTTTCCAGCATATCCAAG GTCAAGAAAATGGGCTTAAGGTTTTCTGATCTATTGGATCGACTCTCCTCAGAGTTTCCTGAGATGCGATTCAGATTCAC CTCCCCACACCCTAAAGATTTTCCAGACGAATTGCTCTATCTTATGCGAGAAAGACATAATATATGCAAAGTTATACATT TACCTGCACAAACAGGTAGTAGCACTGTGCTTGAGAGAATGAGACGAGGATACACTCGAGAGGCTTACTTGGATCTTGTG CACAAAATTCGAAGTGTTATTCCAGATGTGGGCTTAAGCAGTGATTTTATATGTGGTAATATGTTTTTCACGTTTCTTTC TCCATGTCTCTTTACAGCCCTCTATTTCATAATCATGTTTTGTCCGGTGATCTTTTATTCTTTGGGAACTCGGTGTTCTA ATTTCCCTAAGCTATTTAGGTTCAGGTTAAACAAATTTCTACATTGTAATTACCATCTGACATACATCTTTAGAGGTGTT GCACTTCTGAAATTATTGAGAACTTTTTCAAATTTCAATAACTCTTCCAAACAAAATAGTAGAGGTTCCTTTTTTGTGTT AAGAGTTCTGTGGAAGGGATATATGAAATTTCTGTTCGCAAATATGATCATCTAGTTATTTGATTTGTTATTGAGGAGTA GTACCGTATCAAGCAACATGTTTATTCTGTTGGAAGTACTGAAGCAATATTAGTTCATTGATAATTTAGCTATAGTAGAT ATAGTATTAGTACCCAAAGCTTTCTACCTTGTACTTCTTTGCCACACTAATATTTAGCCTCTGATTTCTGTCTCTTAATA TTTGCAATTGTAACAGGTTTTTGTGGAGAAACAGAGGAGGACCACTCTGACACGTTAACTCTCGTGAAAGCTGTTGGTTA TGATATGGCATACATGTTTGCTTATAGCATGAGGGAGAAAACACACGCTCACAGAAATTATGCTGATGATGTTCCCGAGG AAGTAAAGCAAAGGAGGCTAACTGAACTCATCGAGACTTTCCGCGAGAGCACAGGAAAGTGCTATGACTCTCAGGTTGGA ACTACACAGCTTGTGTTAGTTGAAGGACCCAATAAGAGAGCTCCGGACACCGAGCTTATGGGCAAAAGTGACAAGGGCCA TCGGGTGCTATTTGCCAATGTGCCGATCCCAGACAGGGACGATGTTAATACAATGAGAAATCCTGTTGTTGGTGATTTCG TTGAAGTCCGCATAATGAGATCTACTAGGGCATCACTCTTCGGTGAATCACTTGCTATAACTAAACTGAGTTCATTCTAC AATGATCTAGATAAAGAAGCTGTTGCATGCAACATATAA
CDS sequence (LotjaGi2g1v0385400.2) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAATGTTAATGACATGGAGATTGTCCTGTCTATAATGAAAAACGCTGGCTATAATGAAGTTGTGAGTGCTCCTGAGAG TGCAGAAATAATATTTATCAACACTTGTGCCATCAGAGAGAATGCGGAACTTAAAGTATGGCAGAGGCTTAATTACTTTT GGTTTCTTAAGAGGAATTGGAAGGCCAATGTTGCTTCGGGAAGGGCTCAGTCCCTGCACCCTCCGAAAGTAGTTGTCTTG GGCTGTATGGCTGAGAGGCTAAAGGAGAAGATACTTGATGCCGACAAAATGGTTGACGTCGTCTGCGGACCTGATGCATA TAGGGATTTGCCGCGATTACTGGAAGAGGTTGACGACGGCCAGAAAGGAATCAACACTCTTCTTTCACTTGAGGAGACTT ATGCTGATATTAATCCAGTTCGAATCTCCAAGAACTCGGTTTCCGCTTTTGTCTCCGTGATGAGGGGTTGCAACAATATG TGCTCATTTTGTATTGTACCTTTCACTAGAGGCAGAGAGCGGTCACGTCCTGTGGAATCCATTGTGAGAGAGGTGGCAGA GCTGTGGAAAGAGGGTGTGAAAGAAGTAACACTTCTTGGCCAGAACGTGAACAGCTATAATGATACATCTGGTTTTGAAA AAGAGGTTGAATCAGGATCCAATTGGAAACTTAGTGATGGATTTTCCAGCATATCCAAGGTCAAGAAAATGGGCTTAAGG TTTTCTGATCTATTGGATCGACTCTCCTCAGAGTTTCCTGAGATGCGATTCAGATTCACCTCCCCACACCCTAAAGATTT TCCAGACGAATTGCTCTATCTTATGCGAGAAAGACATAATATATGCAAAGTTATACATTTACCTGCACAAACAGGTAGTA GCACTGTGCTTGAGAGAATGAGACGAGGATACACTCGAGAGGCTTACTTGGATCTTGTGCACAAAATTCGAAGTGTTATT CCAGATGTGGGCTTAAGCAGTGATTTTATATGTGGTTTTTGTGGAGAAACAGAGGAGGACCACTCTGACACGTTAACTCT CGTGAAAGCTGTTGGTTATGATATGGCATACATGTTTGCTTATAGCATGAGGGAGAAAACACACGCTCACAGAAATTATG CTGATGATGTTCCCGAGGAAGTAAAGCAAAGGAGGCTAACTGAACTCATCGAGACTTTCCGCGAGAGCACAGGAAAGTGC TATGACTCTCAGGTTGGAACTACACAGCTTGTGTTAGTTGAAGGACCCAATAAGAGAGCTCCGGACACCGAGCTTATGGG CAAAAGTGACAAGGGCCATCGGGTGCTATTTGCCAATGTGCCGATCCCAGACAGGGACGATGTTAATACAATGAGAAATC CTGTTGTTGGTGATTTCGTTGAAGTCCGCATAATGAGATCTACTAGGGCATCACTCTTCGGTGAATCACTTGCTATAACT AAACTGAGTTCATTCTACAATGATCTAGATAAAGAAGCTGTTGCATGCAACATATAA
Protein sequence (LotjaGi2g1v0385400.2) extracted from Lotus japonicus Gifu v1.2 Proteins.
MNVNDMEIVLSIMKNAGYNEVVSAPESAEIIFINTCAIRENAELKVWQRLNYFWFLKRNWKANVASGRAQSLHPPKVVVL GCMAERLKEKILDADKMVDVVCGPDAYRDLPRLLEEVDDGQKGINTLLSLEETYADINPVRISKNSVSAFVSVMRGCNNM CSFCIVPFTRGRERSRPVESIVREVAELWKEGVKEVTLLGQNVNSYNDTSGFEKEVESGSNWKLSDGFSSISKVKKMGLR FSDLLDRLSSEFPEMRFRFTSPHPKDFPDELLYLMRERHNICKVIHLPAQTGSSTVLERMRRGYTREAYLDLVHKIRSVI PDVGLSSDFICGFCGETEEDHSDTLTLVKAVGYDMAYMFAYSMREKTHAHRNYADDVPEEVKQRRLTELIETFRESTGKC YDSQVGTTQLVLVEGPNKRAPDTELMGKSDKGHRVLFANVPIPDRDDVNTMRNPVVGDFVEVRIMRSTRASLFGESLAIT KLSSFYNDLDKEAVACNI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 1 | 136 | 136 | 1.9E-20 | ||
| Pfam | 1 | 103 | 103 | 2.4E-23 | ||
| ProSiteProfiles | 1 | 119 | 119 | 31.876 | ||
| SFLD | 1 | 482 | 482 | 0.0 | ||
| TIGRFAM | 1 | 473 | 473 | 6.4E-109 | ||
| PANTHER | 1 | 486 | 486 | 1.8E-254 | – | |
| SFLD | 1 | 482 | 482 | 0.0 | – | |
| PANTHER | 1 | 486 | 486 | 1.8E-254 | – | |
| TIGRFAM | 1 | 475 | 475 | 5.0E-110 | – | |
| SFLD | 68 | 372 | 305 | 6.5E-29 | – | |
| SUPERFAMILY | 141 | 395 | 255 | 2.26E-55 | – | |
| Gene3D | 145 | 403 | 259 | 2.6E-84 | ||
| SMART | 147 | 388 | 242 | 4.0E-52 | ||
| ProSitePatterns | 151 | 171 | 21 | - | ||
| Pfam | 151 | 347 | 197 | 2.4E-35 | ||
| CDD | 155 | 373 | 219 | 4.0378E-7 | – | |
| Pfam | 402 | 475 | 74 | 2.1E-13 | ||
| ProSiteProfiles | 402 | 478 | 77 | 14.127 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Biological process | TRNA modification | The covalent alteration of one or more nucleotides within a tRNA molecule to produce a tRNA molecule with a sequence that differs from that coded genetically. | ||
| Molecular function | Transferase activity | Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2. | ||
| Molecular function | Methylthiotransferase activity | Catalysis of the addition of a methylthioether group (-SCH3) to a nucleic acid or protein acceptor. | ||
| Molecular function | Iron-sulfur cluster binding | Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. | ||
| Molecular function | 4 iron, 4 sulfur cluster binding | Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. |
Expression pattern of LotjaGi2g1v0385400.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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