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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0131529 |
| Transcript ID | Lj0g3v0131529.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: oxygen-independent coproporphyrinogen-III oxidase-like protein sll1917-like [Cicer arietinum] gi|502133605|ref|XP_004501826.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 422 | 422 | 4.00E-286 | – | |
| PANTHER | 1 | 422 | 422 | 4.00E-286 | – | |
| SFLD | 31 | 381 | 351 | 0 | – | |
| SFLD | 34 | 416 | 383 | 0 | – | |
| SUPERFAMILY | 52 | 421 | 370 | 7.98E-90 | – | |
| SMART | 54 | 284 | 231 | 1.10E-51 | ||
| SFLD | 55 | 360 | 306 | 0 | – | |
| TIGRFAM | 56 | 412 | 357 | 1.20E-82 | ||
| Gene3D | 56 | 300 | 245 | 8.60E-32 | ||
| Pfam | 59 | 239 | 181 | 8.30E-19 | ||
| PANTHER | 450 | 479 | 30 | 4.00E-286 | – | |
| PANTHER | 450 | 479 | 30 | 4.00E-286 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Catalytic activity | Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic. | ||
| Molecular function | Coproporphyrinogen oxidase activity | Catalysis of the reaction: coproporphyrinogen III + 2 H(+) + O(2) = 2 CO(2) + 2 H(2)O + protoporphyrinogen IX. | ||
| Cellular component | Cytoplasm | All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures. | ||
| Biological process | Porphyrin-containing compound biosynthetic process | The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group. | ||
| Molecular function | Iron-sulfur cluster binding | Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms. | ||
| Molecular function | 4 iron, 4 sulfur cluster binding | Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands. |
Expression pattern of Lj0g3v0131529.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0131529.1, powered by CORGI.
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