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| Field | Value |
|---|---|
| Gene ID | LotjaGi5g1v0202800 |
| Transcript ID | LotjaGi5g1v0202800.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein, putative; TAIR: AT5G16260.1 RNA binding (RRM/RBD/RNP motifs) family protein; Swiss-Prot: sp|Q5RB63|HTSF1_PONAB HIV Tat-specific factor 1 homolog; TrEMBL-Plants: tr|A0A0B2Q0D8|A0A0B2Q0D8_GLYSO HIV Tat-specific factor 1 like; Found in the gene: LotjaGi5g1v0202800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr5:50319442..50327257) extracted from Lotus japonicus Gifu genome v1.2.
CTGTTTTCCCTTTTTATGTGTTTTTTTTGGCCCAACTTTCATGCCCTCTCTCTAGAACCTGCGTTTGTATAACAAATCAT CGTCGTCTCGCCATTGTAGCTCTCAGCAGAAAATAGCGTCGTCGTCGTCGGAAACGATGGCTTCTGAGAATGGCCATGGA AGCCAGCCGCAAATTTCTGGTGGGTGCCACCACCTCCGTTTTCATTTATCTTCATCCCCTTCTCAATTTTTGCTTATTTG ATTGAGTTCTGTTCCTTACGCAGGTGATAATGTTACTGAATTGGGGTGGTACGTTCTTGGTCAGGATCAACAGCAGCTTG GTCCTTATGCCTTCTCTGAGTTGCGTGGTGAGTTAATTTTTTCTGAATGAATGTTTCAATGTCTCATATGGATAAAATGG AGCAAGGTTGGTTAGGGCTTGTATATTTTAATTTTGATTTTTTTTTTTCCTTTTTGCTGGACTAAAATTTGTATAAAGTG GCCGACTTGGGTTGGCACAACTGACGGCAGGTTCCGGGTTTAACTCTAACCTACCATAGGTCGAGGCCCCAGTAAAATCC TAGTTGGTGGGCCACCCTCCTTTTAGAGATCCCCTGACACTCCTACCTCGGAGTGGGCGTCTACTGAGCGGTGAAATAGG ACCATTTAAAAAAAACATGAGTGTTGCATGTTCCATGATGTCATTTTTAGGAATGTTAATTTATGTATCTATTCCATCTC TTTTGGATTGTATTAAGGTTTTAGCTTGGTCTTGGTTTAGGGGTAGACTTAAAAGGATTTAGTATTTCGTTTGTTGATTG GTATCGACAGCCTTTAATTTGTTTAACAGGTTGGTCTTGTATATGAGTAAGGGCACCCTCGCACTTTTTTTATTAATTTC TTTGGCTCTAGTTAGTACGAAACGAAACACATGACTTAATAATGTTAGGTGCTGAGCGAAACTTGAAACATTATAACCAT ACATGTTGGGTTTCGTTTGAAAAATCAGTGTCATATATAGTTTCATTTTTCTGGTTTTAAACTTTTCGTAATTATAAGTA TTTTTCTTAGCATATTTACTTGGCAATTGGTGTGAGCAGAGCATTTTTCAAATGGATACATATTCGAAAATACACTTGTG TGGTCTGAAGGAAGAAGTGAGTGGCAGCCCTTGTCCTCAATTTCGAGCTTATGGGCTGAAATTAACCAAGGGGGGCCTGA TTCTTCAACTGCAGGTATAGCTTCTCTTCTCTTCGCTTTTTCTCACTGTTTTCCTGTGTGTATTTCATTGTTACTGCTAT TAGTATTATTACTTGTGGAGCTTAGAGAGTGACCTGTCATGTAGTGTCTGCCCATGAGGTTGATGAGTTTGAAAGATGGC AAAGGGAGATTCAGGAGGCAGAGGCGCAGGTGGAAGGTTCAGAGTTTGGCTCCATTTCCGGCAATGTTGGCGATAGTGTA GCAGGAGAAGATTTTGAGAGACCTTCAACACCGCCTGAGGGTGAAGAAGAATTTACCGATGATGATGGGACTAAATATAA ATGGGACAGGAATTTCAGGGTTTGGGTTCCCCAGGTTGGTGCATGATATGTATTTTCAGTATTATTATTATTATTATTAT TATCTGTTTTCAATCTCTTACTTCCTGCAATTGTTAATGTTTTTTGTTAGATTATGATTACACAAAAATTAGCTAAAAGT TTTACCCAATTTTTGATACCTAATCCTTAGTTTTTTAGCTGTTTCTTGGAGCTTATGTGGTTCATAGGGGTGATTCTGCA ATTTTCAAACTGTTCATTTGTACTCGTTTCCAGTTTTGTGCATATAATTATGGCATACTAACAACATTGATATATGTATG AGATGACTTGACAACACTGACATTGCTTTGGAAATAATTGGGTCTCTTCGTTTTACATTCTGGACAGGCCAAATAATTAT AGGTGCAAGTATCATCATTTCTTTGAATTATTTTAAAGCTTTATTGTGGTAGATTGTGACTGCTGTTCATTATTCAAGAG GCTGTTTGATATGAATTTTTCATGGCTTCTGTTGGGTACTTGGGTACTAGATCCTGAAGGCAAGTTTGAGAATTCTTCTA CTTTATTGGAAACTAATACTTCCTCTCTCAAAACTTCTTGTGAACAATCTCCTATACAAGCACGAATAAGTTTTTCTCAA GTTTAAATCATTTTGTTTGGTTTTTAATATATGAACAGGTTTGAAGTTTTATGAAGTGTTAAATCTAAGTATAATCTAAA GCGCTTATGTTATGGATACTCTCTAGTGATTTATTTTCTTTTATACTTGGATTGAATCATATCTCTTGTTTTGTTTCTGC TGGATGTATTTGGTCTTCTATGAATAACATGGTCTTTTACTCTTTATATTTTCCTTTCATATTATATAATGTCTTGTCTT CTCAATCTTGAGGGCTTTCATGCGTCATTGTGTTTTCTGTGTATCCTTGGAGTAATAATCTCTATTCATCTCAATGATGC TGATGTATTTCTTTTTTGGCCATTCAAGTAAAGGTTTTGATTCGTAAATTTATTTTTGATTAAGTTGTTTTTCTTTTTTT TGGGGGGGTAGGACTGATGAAGTTTTTATGTGATAGGAGCATACGTCTGGCAGCACTGAGCCTTATGGGGTTGAAGAGAT GACTTTCTTAAAAGAAGATGAAGTTTTTCCATTAGCTAATTCTGATGCCCCAGAAAAGTCTGAAGATATTTCAAAAGTGA GTGTTTCTGAGAGTTCCTTAAAGGAAGAAGCAAATGAAGCAAATAATCCCAATACGGTAGCAGATGGAAAGAGGAAGCTT TCTGATAAAGATGCTGACAAGAAGGTGCCCTCTCTCTTTCCCTCTTTTTTAATATCAATGGTTTCACTCTTCTCCATTTT TTCAGAAATGAGTAACTTTTGGGAGATAAATGGCACCCCTATTGACCCTGGTCTGTTTCAGGAACCTAATAAACCTCCTG ACAGTTGGTTTGAATTGAAGATCAATACACACGTTTATGTTACTGGATTACCTGAGGATGTTACCGTCGATGAAGTAAGC ATTATAGCTTTTATCTCAATTTTCCTGTAAGTAGTTATTCTTGCAAGAACTAACAATTTAACATGGGTACTTTTGTAGAT TGTGGAGATATTTTCCAAGTACGGAATTATAAAGGAGGTATATTTTCTATCCTATCTTATATGCTCAGTTGTAAAATCAG ATATAATTCAACTATAATTCATAGGTTTAAATTAGTTTTCATGATCAGAAGTTTCTTACGAACATATTATTTTTGTGAGA GAACATTGTTGACAGTGTATAAATTCATGGTACAATGACTGCAATGCTGCAAGTATGAATTAACATTTCTAGACATTGAA GAGCAAAATAAAAGCATATCATGTTTTTCCTCTTTAATGCTTTCATGTTGTAAGCCTTTTATTTTTTATATGAATTTGGA GAGCCTTACTCTCCTTTTGCCGGGTACATGCGCTCTCCATTCCCTAACCAAAAGTTAATGATAGAAGGCTTAGCAACTCT TTTGAAATAGTTCTCACTAATAGTGCCAGTCATAAGAGGTCATTCTTTCAAAGAAGTTCATTGTGGACTGACAATATTTA AATACTCAAGATAATGGATGACTAGCTATTTGAGGTTTTCGTGGCCTATACCGGCTCCATATGAATGCATGATTTATTAT GTTTATAATAGGACCCAGAAACCAAAAAGCCTCGTGTGAAGCTCTATGTTGATAAAGAGACAGGAAAGAAAAAGGGAGAT GCTCTCATTACATATCTTAAGGTACTATTAACCCTTATTGTTTTACCTGTGCATATAGTGTTGGAGGTGACAGGGTTTCC ATTTTGTTTGTGTATATTAGGAACCATCAGTCGCTCTGGCAATCCAACTTTTGGATGGTACACCTCTTCGCCCTGATGGC AAGATTCCTATGTCTGTCACCCCGGCTAAATTTGAGCAGAAAGGTAGCCGTTATTTTAAATACATTATGTAGCAGCTTCT GATAATTGTTCTTAGTTGTGGTAAACCCATTTATCATGCCTGCTGTTGCTTAATGAAGCTTGCTTTAAATGTGCAGGAGA CAAGTTTGTATCAAAGCAAGTAGACAATAAAAAGAAAAAGAAATTGAAAAAGGTGGAAGACAAAATGCTTGGATGGGGTA AGTTTGGTCTCCCAATTTTTTCTAGTGGATGTTTCTGAAATTCGACTGATTCCCAGTTCAATCTTTATTTAAGCCTATTT TCCCAAAATTGAAGTGCCGTCATGGTCTACCTTATTTTTACAATAATTTAGTAGATGGTTTAAAAGATTGTATTTGTGTT GAGCCAATTTGGATAATCTTTTCCACAAGCACTTATATTAAGAAAAAAAAGATAAAATGATCTTGCTATAATTATATTTC TTTTAAATGATTGCTTCATACACAGGTTAAAATCAGCTTCTGCACCTCAACTTTTAAAAGCTACATCTTCTAGTTTCTCC ATAAACACCTATGGACTTATAAGGACTTTTTCATGAATTGAAAATCAAATGCTTAGTTGAGAAGCTCCCATAAATTAGAA GCTAATCCTAACCTGATCGTTTTATGGTTTGCTTCTAATGGTGGTGAAGCTAGAAAGCATGCTATGCTCTTTTTGGTTGA TTAAGGTTTCAGATTCATTTTTCAGGAGAAGTTAAGATTTTTTTTTGGTTGATTGAGGTTTCAGATTTCATTTTCATAGC TGGTTTACTCATTTACCATGCAGTAATTTATTCTCTCGTTGTATGGCTCAGGTGGTCGTGATGATGCAAAATTGTCAATA CCGGCAACTGTTATCCTTCGTTATATGTTCTCTCCAGCTGAAATGAGGGTTGGTGTTACTTGATTTTGCCTGCATTCTAG ATACAACTATTACACTGACATTGCTATGCGAGTGTCCTTAACTGCACTTCATCTTGAACATGGTCATATAGCTTATAGAC ATGAACTGCTCTTGAGCACTTCATCCTGAACATGGTCATAACTTCATCTTGAACATGGTCTCCAATAAACAGATTTAGGA TAGACTTTGATACCATCTTATGAACCAACTATCCTTAAAGCTTAAGCTGTTGGGTGAAGATACATGAATGGTTTTGTACA ATAGGTACTCATAGACTCATAGTTAGTTAATTAGTAGTTCAGTTAGTGACTTAGAGTCAGAAAGCACATGCTATAAATAA GATAGAGAGGATTAGCATCTTTGGGATCACTGTAGCTGGGAGTTAGGGTGAGACCAAATTCAATGCATTTTTTAATAAGT AGGAGAAATATATTGACTGTTTTAAAAATAGACCAATTATAGGAAGTGTGTGAGAGAGTGTGTTTAAAAGAGTGTGCTGT GAGCACTCCTCCTTTAAGTAAAATACACACTTCAATTCTTCTTCATTGCTGGTAATAATCAAATAATCAAATTTCCTGCT ATTAGAATTTTGGAGACCTAACTCTACCCCAAATAGAGGTGAGGATTGTCTTCCCATATATAAGGGCTATCTTGTGTGTT AACCATATCTATATTCAATGGGAGACTTCTCAACACACCCCCTCCACACCCAGGTCTGGACATTTGGAGCGTGAAGCTTG CAGGGTTGAACATCTGCGGGTGGCCCATTTATGAGTGGTCTCCAATAAACGATCTAGGATAGACTCTGATACCATATTAT AATTTGTGAGGCCTAACTCTACCCTAAAATTAGCTTAGACGGATTGCTTTCCCATATATAAGAGCTATTTTGGTCATATC TCTATTCAATGTGGGACTTCTCAATACCTGTTTTTCTCATATTAAAGTTAAATATCAATGTGCTCTGTCAGAATTCCAAT TTGGTGCTGCTATTTCTCATATTAGACATTTGCTGATATTACCTATGCAGGCTGATGAAAATTTGCGCTTAGAACTAGAA GAAGATGTTAAAGAGGAATGTACAAAGCTTGGTCCTATAGACTCAGTCAAGGTAATTGATATTGTTGTTGTTGTTGTTAT ACCTCCATATTTGCTGAAGACTTCTGGTTCCTGTAGAATACTGTGACGCAAAAAGTTTTTGATGGCTCCCTTGAAAAAAC TACACAGTACACACACACACAGACGGCCGTGCCTCTACTTTTTTGGCAATTCTTCAATACCTCTATAGTAGCTTCACTTT TACAGTTAGTTTGACAGATTTTTTCTTTTCTGTTTTTCTGGGGAAAAAAATGGAAAAAAACCAATTCACTAAACCTTTTC CTGTTCCCTGCTGGTTTTTCTACAGGTATGTGAGAATCATCCTCAGGGTGTTGTTTTGGTAAGATTCAAGGATAGGAAGG ATGCTCAGACATGCATAGATACGATGAATGGAAGATGGTAACTTAATCCTCCTCATTTTATCAATTTTCTACCTGTGCAA TTTTTATGTGATTTTCATGCCGTAACAAGTGGTGTCTAGGATTGTCAATTCTTTATCACCTGGAATCTAGAATACTACTA ATGAACCTAGAAAACTATATTAACACTTCCCCTCCAATTGAAGCTAACAAAACATAGCTTGTTGCAAATAAAAAACATAA AGAACACGAAGACCTAACACAACTCTACCCATCTCAACCAAAGAACAGCAAGTAGTGATAAAACCTTTTGGAAATATCCT TGGCAGATTAGCCCACAGAGGTCTTCCACCTTTCTTTAGTGGCCTCATCAACCTTTCTCCTGCTTCTCTTTGGCACACAT TTGAACTACCAGACATAGCTGTAGAAATCTTTGACCTTTTTTCTTAGTGGTTCTTGTCCCCTTGACTTGCTACCAGCTGG TATACCAACCCTAGGTCTCAGTCTCACCATCCAATAACAGTCCAACTCAAAACCCTTAATGTCTGAACTCTGAACTGTTA TTTCAGTCGCTATGGTGTTAGAATGAATTTAGGGATTAAGAATTTGCTGAAATTATAAAACTAAAGCTTCTTTTCTTTTC TGAATTGCTTTTACTTTTCTTTTTCCCTCATAATCTCATTTATATCTTCTTTTACCTTTCCCTTATGGATATCAACTCTG GTCACACTTCCCTCACTTCTTTATCAGGTTTGGTGGTAGACAGATACATGCCAGTGAAGATGACGGTTTAGTTAACCATG CCTTGGTCCGGGATTTGGATGAAGATGCCAAGCGGCTGGAGCAGTTTGGTGCTGAACTTGAAGGTGAGTGAGTTACTGAG AATAATAAGTTCATCAGACCTGGGAATGTTTCAAGATGGCTGAAGCTTTTGGATTACATGGCTCTTTTCATGGTTTTGCA ATGATATTTTTGTTTTCTCATATCATTGCCTGAGAAAAAGAAAAGTAGAGGAGGAAGAACTTACTCACATCTTATCTGGA AGAGAGTAGTATATTCAATGTAGATTATGTGACTCATGAAAGTGAAGTTAACATTTGAATTGTAGCAAGTTATTAACCGG TAGGGTAATACACCTTCGTAGATAGTAATTATTCCATTTTATCTGTTGTGGGAGATTATGCATAGAGTAACCAGAAGAGT TGTTGCATCGCCCATATGGTGTCATGCGTAATCAAGATTAGCAGCTTGCCATGCATGAGGCATTGAGACAGTTGGTGATG GTCACCCTGTGGTCTGAGAATTGTATTCATTTGATGATTGCTGTCGATATTTACAATTTATATTTTACTCTAAAAAAGAC ACATGCATCTTTCTGCCAAATTGCCATCTAGGATAAACAATGCCTATGAAAGTATAAACAGAGGGTCAGCCTAATTTAAC AAAAGGTTATTTTCTAGAAATATATTAGATAATTTCAAAAAAAATAGAAATATATT
CDS sequence (LotjaGi5g1v0202800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTTCTGAGAATGGCCATGGAAGCCAGCCGCAAATTTCTGGTGATAATGTTACTGAATTGGGGTGGTACGTTCTTGG TCAGGATCAACAGCAGCTTGGTCCTTATGCCTTCTCTGAGTTGCGTGAGCATTTTTCAAATGGATACATATTCGAAAATA CACTTGTGTGGTCTGAAGGAAGAAGTGAGTGGCAGCCCTTGTCCTCAATTTCGAGCTTATGGGCTGAAATTAACCAAGGG GGGCCTGATTCTTCAACTGCAGTGTCTGCCCATGAGGTTGATGAGTTTGAAAGATGGCAAAGGGAGATTCAGGAGGCAGA GGCGCAGGTGGAAGGTTCAGAGTTTGGCTCCATTTCCGGCAATGTTGGCGATAGTGTAGCAGGAGAAGATTTTGAGAGAC CTTCAACACCGCCTGAGGGTGAAGAAGAATTTACCGATGATGATGGGACTAAATATAAATGGGACAGGAATTTCAGGGTT TGGGTTCCCCAGGAGCATACGTCTGGCAGCACTGAGCCTTATGGGGTTGAAGAGATGACTTTCTTAAAAGAAGATGAAGT TTTTCCATTAGCTAATTCTGATGCCCCAGAAAAGTCTGAAGATATTTCAAAAGTGAGTGTTTCTGAGAGTTCCTTAAAGG AAGAAGCAAATGAAGCAAATAATCCCAATACGGTAGCAGATGGAAAGAGGAAGCTTTCTGATAAAGATGCTGACAAGAAG GAACCTAATAAACCTCCTGACAGTTGGTTTGAATTGAAGATCAATACACACGTTTATGTTACTGGATTACCTGAGGATGT TACCGTCGATGAAATTGTGGAGATATTTTCCAAGTACGGAATTATAAAGGAGGACCCAGAAACCAAAAAGCCTCGTGTGA AGCTCTATGTTGATAAAGAGACAGGAAAGAAAAAGGGAGATGCTCTCATTACATATCTTAAGGAACCATCAGTCGCTCTG GCAATCCAACTTTTGGATGGTACACCTCTTCGCCCTGATGGCAAGATTCCTATGTCTGTCACCCCGGCTAAATTTGAGCA GAAAGGAGACAAGTTTGTATCAAAGCAAGTAGACAATAAAAAGAAAAAGAAATTGAAAAAGGTGGAAGACAAAATGCTTG GATGGGGTGGTCGTGATGATGCAAAATTGTCAATACCGGCAACTGTTATCCTTCGTTATATGTTCTCTCCAGCTGAAATG AGGGCTGATGAAAATTTGCGCTTAGAACTAGAAGAAGATGTTAAAGAGGAATGTACAAAGCTTGGTCCTATAGACTCAGT CAAGGTATGTGAGAATCATCCTCAGGGTGTTGTTTTGGTAAGATTCAAGGATAGGAAGGATGCTCAGACATGCATAGATA CGATGAATGGAAGATGGTTTGGTGGTAGACAGATACATGCCAGTGAAGATGACGGTTTAGTTAACCATGCCTTGGTCCGG GATTTGGATGAAGATGCCAAGCGGCTGGAGCAGTTTGGTGCTGAACTTGAAGGTGAGTGA
Protein sequence (LotjaGi5g1v0202800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MASENGHGSQPQISGDNVTELGWYVLGQDQQQLGPYAFSELREHFSNGYIFENTLVWSEGRSEWQPLSSISSLWAEINQG GPDSSTAVSAHEVDEFERWQREIQEAEAQVEGSEFGSISGNVGDSVAGEDFERPSTPPEGEEEFTDDDGTKYKWDRNFRV WVPQEHTSGSTEPYGVEEMTFLKEDEVFPLANSDAPEKSEDISKVSVSESSLKEEANEANNPNTVADGKRKLSDKDADKK EPNKPPDSWFELKINTHVYVTGLPEDVTVDEIVEIFSKYGIIKEDPETKKPRVKLYVDKETGKKKGDALITYLKEPSVAL AIQLLDGTPLRPDGKIPMSVTPAKFEQKGDKFVSKQVDNKKKKKLKKVEDKMLGWGGRDDAKLSIPATVILRYMFSPAEM RADENLRLELEEDVKEECTKLGPIDSVKVCENHPQGVVLVRFKDRKDAQTCIDTMNGRWFGGRQIHASEDDGLVNHALVR DLDEDAKRLEQFGAELEGE
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | 16 | 74 | 59 | 5.75E-5 | ||
| Pfam | 23 | 73 | 51 | 6.6E-16 | ||
| Coils | 89 | 109 | 21 | - | – | |
| PANTHER | 93 | 498 | 406 | 6.2E-136 | ||
| MobiDBLite | 108 | 150 | 43 | - | – | |
| MobiDBLite | 134 | 150 | 17 | - | – | |
| MobiDBLite | 191 | 248 | 58 | - | – | |
| MobiDBLite | 209 | 227 | 19 | - | – | |
| MobiDBLite | 228 | 247 | 20 | - | – | |
| SUPERFAMILY | 246 | 349 | 104 | 2.69E-17 | ||
| Gene3D | 255 | 341 | 87 | 3.1E-19 | ||
| CDD | 255 | 349 | 95 | 1.22298E-49 | ||
| ProSiteProfiles | 256 | 335 | 80 | 11.998 | ||
| SMART | 257 | 341 | 85 | 5.0E-9 | ||
| Pfam | 258 | 330 | 73 | 2.3E-9 | ||
| Gene3D | 386 | 476 | 91 | 1.7E-26 | ||
| CDD | 386 | 471 | 86 | 4.98612E-36 | – | |
| SMART | 388 | 468 | 81 | 4.0E-5 | ||
| SUPERFAMILY | 390 | 468 | 79 | 9.94E-20 | ||
| ProSiteProfiles | 411 | 472 | 62 | 9.712 | ||
| Pfam | 411 | 466 | 56 | 1.7E-9 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi5g1v0202800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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