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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0004669 |
| Transcript ID | Lj0g3v0004669.2 |
| Related isoforms 1 | |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | DNA/RNA helicase protein isoform 1 [Theobroma cacao] gi|508786331|gb|EOY33587.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | 48 | 74 | 27 | – | – | |
| SMART | 101 | 210 | 110 | 2.40E-15 | ||
| Pfam | 102 | 206 | 105 | 1.20E-14 | ||
| MobiDBLite | 271 | 296 | 26 | – | – | |
| PANTHER | 283 | 293 | 11 | 4.90E-188 | – | |
| PANTHER | 283 | 293 | 11 | 4.90E-188 | – | |
| SUPERFAMILY | 310 | 341 | 32 | 1.52E-49 | ||
| PANTHER | 310 | 716 | 407 | 4.90E-188 | – | |
| PANTHER | 310 | 716 | 407 | 4.90E-188 | – | |
| Gene3D | 319 | 341 | 23 | 1.70E-24 | ||
| SMART | 320 | 621 | 302 | 8.50E-27 | ||
| Pfam | 327 | 716 | 390 | 4.30E-83 | ||
| ProSiteProfiles | 382 | 599 | 218 | 17.532 | ||
| Gene3D | 386 | 413 | 28 | 1.70E-24 | ||
| SUPERFAMILY | 387 | 422 | 36 | 1.52E-49 | ||
| CDD | 389 | 581 | 193 | 1.30E-14 | – | |
| Gene3D | 464 | 596 | 133 | 1.70E-24 | ||
| SUPERFAMILY | 466 | 637 | 172 | 1.52E-49 | ||
| SUPERFAMILY | 649 | 716 | 68 | 2.76E-09 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. | ||
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Molecular function | Zinc ion binding | Interacting selectively and non-covalently with zinc (Zn) ions. | ||
| Molecular function | Hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides | Catalysis of the hydrolysis of any acid anhydride which contains phosphorus. |
Expression pattern of Lj0g3v0004669.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0004669.2, powered by CORGI.
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