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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0037709 |
| Transcript ID | Lj0g3v0037709.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: intron-binding protein aquarius-like [Glycine max] gi|356574068|ref|XP_003555174.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PIRSF | 34 | 1504 | 1471 | 0 | ||
| PANTHER | 37 | 1490 | 1454 | 0 | ||
| PANTHER | 37 | 1490 | 1454 | 0 | – | |
| Pfam | 48 | 870 | 823 | 0 | ||
| Gene3D | 851 | 984 | 134 | 3.70E-31 | ||
| SUPERFAMILY | 863 | 938 | 76 | 1.65E-52 | ||
| Pfam | 874 | 1171 | 298 | 1.30E-28 | – | |
| CDD | 887 | 983 | 97 | 0.00381104 | – | |
| SUPERFAMILY | 1066 | 1369 | 304 | 1.65E-52 | ||
| Gene3D | 1120 | 1218 | 99 | 3.70E-31 | ||
| Pfam | 1180 | 1371 | 192 | 1.80E-24 | – | |
| Gene3D | 1312 | 1381 | 70 | 7.10E-05 | ||
| MobiDBLite | 1472 | 1521 | 50 | – | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Biological process | MRNA splicing, via spliceosome | The joining together of exons from one or more primary transcripts of messenger RNA (mRNA) and the excision of intron sequences, via a spliceosomal mechanism, so that mRNA consisting only of the joined exons is produced. | ||
| Cellular component | Spliceosomal complex | Any of a series of ribonucleoprotein complexes that contain snRNA(s) and small nuclear ribonucleoproteins (snRNPs), and are formed sequentially during the spliceosomal splicing of one or more substrate RNAs, and which also contain the RNA substrate(s) from the initial target RNAs of splicing, the splicing intermediate RNA(s), to the final RNA products. During cis-splicing, the initial target RNA is a single, contiguous RNA transcript, whether mRNA, snoRNA, etc., and the released products are a spliced RNA and an excised intron, generally as a lariat structure. During trans-splicing, there are two initial substrate RNAs, the spliced leader RNA and a pre-mRNA. |
Expression pattern of Lj0g3v0037709.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0037709.1, powered by CORGI.
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