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| Field | Value |
|---|---|
| Gene ID | Lj0g3v0041889 |
| Transcript ID | Lj0g3v0041889.1 |
| Lotus japonicus genome version | MG20 v3.0 |
| Description | PREDICTED: ABC transporter C family member 12-like [Glycine max] gi|356517706|ref|XP_003527527.1| |
| Working Lj name | n.a. |
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 279 | 279 | 5.40E-202 | – | |
| Phobius | 1 | 2 | 2 | – | – | |
| PANTHER | 1 | 279 | 279 | 5.40E-202 | – | |
| Phobius | 1 | 25 | 25 | – | – | |
| Phobius | 3 | 16 | 14 | – | – | |
| Gene3D | 4 | 63 | 60 | 5.60E-06 | – | |
| SUPERFAMILY | 4 | 63 | 60 | 1.11E-06 | ||
| Phobius | 17 | 25 | 9 | – | – | |
| Phobius | 26 | 279 | 254 | – | – | |
| Coils | 49 | 69 | 21 | – | – | |
| SUPERFAMILY | 74 | 279 | 206 | 2.19E-49 | ||
| ProSiteProfiles | 79 | 279 | 201 | 17.234 | ||
| CDD | 79 | 279 | 201 | 3.64E-111 | – | |
| Gene3D | 79 | 279 | 201 | 6.10E-55 | ||
| Pfam | 97 | 232 | 136 | 2.90E-19 | ||
| SMART | 106 | 279 | 174 | 3.50E-05 | ||
| ProSitePatterns | 205 | 219 | 15 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | ATP binding | Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator. | ||
| Cellular component | Integral component of membrane | The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane. | ||
| Molecular function | ATPase activity | Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction. | ||
| Molecular function | ATPase activity, coupled to transmembrane movement of substances | Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane. | ||
| Biological process | Transmembrane transport | The process in which a solute is transported across a lipid bilayer, from one side of a membrane to the other. |
Expression pattern of Lj0g3v0041889.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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A list of the top 25 highly co-expressed genes of Lj0g3v0041889.1, powered by CORGI.
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