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Lj3g3v3513740.1

Overview

Field Value
Gene ID Lj3g3v3513740
Transcript ID Lj3g3v3513740.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ATP-dependent Clp protease proteolytic subunit 2, mitochondrial-like isoform 1 [Glycine max] gi|356538559|ref|XP_003537770.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10381:SF11
27 243 217 6.40E-150 –
PANTHER
PTHR10381
27 243 217 6.40E-150
IPR023562
Hamap
MF_00444
34 224 191 41.026
IPR001907
Gene3D
G3DSA:3.90.226.10
34 223 190 5.30E-83
IPR029045
SUPERFAMILY
SSF52096
42 225 184 3.73E-72
IPR029045
Pfam
PF00574
43 223 181 4.20E-82
IPR023562
CDD
cd07017
50 220 171 3.86E-107 –
PRINTS
PR00127
50 65 16 1.90E-47
IPR001907
PRINTS
PR00127
90 110 21 1.90E-47
IPR001907
ProSitePatterns
PS00381
121 132 12 –
IPR018215
PRINTS
PR00127
121 138 18 1.90E-47
IPR001907
PRINTS
PR00127
142 161 20 1.90E-47
IPR001907
ProSitePatterns
PS00382
143 156 14 –
IPR033135
PRINTS
PR00127
199 218 20 1.90E-47
IPR001907

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004252
Molecular function Serine-type endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
Subterm of
GO:0006508
Biological process Proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
Subterm of

Genome browser

LORE1 insertions 5

Expression data

Expression pattern

Expression pattern of Lj3g3v3513740.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj3g3v3513740.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.