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Lj1g3v3244500.2

Overview

Field Value
Gene ID Lj1g3v3244500
Transcript ID Lj1g3v3244500.2
Related isoforms 1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: ATP-dependent Clp protease proteolytic subunit 3, chloroplastic-like [Glycine max] gi|356499630|ref|XP_003518640.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
PANTHER
PTHR10381
21 313 293 9.50E-200
IPR023562
PANTHER
PTHR10381:SF20
21 313 293 9.50E-200 –
Hamap
MF_00444
63 258 196 36.582
IPR001907
Pfam
PF00574
83 257 175 1.50E-73
IPR023562
SUPERFAMILY
SSF52096
83 257 175 5.36E-62
IPR029045
Gene3D
G3DSA:3.90.226.10
83 258 176 3.40E-75
IPR029045
PRINTS
PR00127
84 99 16 3.20E-47
IPR001907
CDD
cd07017
84 254 171 1.23E-100 –
PRINTS
PR00127
124 144 21 3.20E-47
IPR001907
PRINTS
PR00127
155 172 18 3.20E-47
IPR001907
ProSitePatterns
PS00381
155 166 12 –
IPR018215
PRINTS
PR00127
176 195 20 3.20E-47
IPR001907
ProSitePatterns
PS00382
177 190 14 –
IPR033135
PRINTS
PR00127
233 252 20 3.20E-47
IPR001907
MobiDBLite
mobidb-lite
301 324 24 – –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004252
Molecular function Serine-type endopeptidase activity Catalysis of the hydrolysis of internal, alpha-peptide bonds in a polypeptide chain by a catalytic mechanism that involves a catalytic triad consisting of a serine nucleophile that is activated by a proton relay involving an acidic residue (e.g. aspartate or glutamate) and a basic residue (usually histidine).
Subterm of
GO:0006508
Biological process Proteolysis The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
Subterm of

Genome browser

LORE1 insertions

No LORE1 insertions have been found in the genomic region that overlaps with this gene.

Expression data

Expression pattern

Expression pattern of Lj1g3v3244500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v3244500.2, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.