Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

Lj0g3v0111459.1

Overview

Field Value
Gene ID Lj0g3v0111459
Transcript ID Lj0g3v0111459.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max] gi|356562613|ref|XP_003549564.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.10.20.90
51 128 78 1.30E-14 –
PANTHER
PTHR11254:SF329
53 63 11 1.50E-112 –
PANTHER
PTHR11254
53 63 11 1.50E-112 –
ProSiteProfiles
PS50053
54 130 77 18.084
IPR000626
SMART
SM00213
54 126 73 4.90E-10
IPR000626
SUPERFAMILY
SSF54236
55 142 88 1.22E-16
IPR029071
Pfam
PF00240
58 128 71 3.50E-15
IPR000626
CDD
cd01769
62 126 65 4.80E-11 –
PRINTS
PR00348
65 85 21 1.20E-06
IPR019956
PRINTS
PR00348
86 106 21 1.20E-06
IPR019956
PRINTS
PR00348
107 128 22 1.20E-06
IPR019956
PANTHER
PTHR11254
358 654 297 1.50E-112 –
PANTHER
PTHR11254:SF329
358 654 297 1.50E-112 –
SUPERFAMILY
SSF56204
475 654 180 5.36E-36
IPR000569
ProSiteProfiles
PS50237
501 656 156 28.589
IPR000569
Pfam
PF00632
530 654 125 3.90E-18
IPR000569
Gene3D
G3DSA:3.30.2160.10
603 654 52 1.90E-05 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 13

Expression data

Expression pattern

Expression pattern of Lj0g3v0111459.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0111459.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.