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Lj0g3v0201989.1

Overview

Field Value
Gene ID Lj0g3v0201989
Transcript ID Lj0g3v0201989.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: probable phosphatidylinositol 4-kinase type 2-beta At1g26270-like [Glycine max] gi|356495721|ref|XP_003516722.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:3.10.20.90
28 113 86 2.80E-08 –
SUPERFAMILY
SSF54236
29 112 84 7.01E-05
IPR029071
PANTHER
PTHR10666:SF134
30 205 176 0 –
PANTHER
PTHR10666
30 205 176 0 –
SMART
SM00213
32 111 80 0.84
IPR000626
ProSiteProfiles
PS50053
34 115 82 10.092
IPR000626
Pfam
PF00240
38 112 75 7.10E-08
IPR000626
SUPERFAMILY
SSF54236
83 189 107 1.09E-19
IPR029071
SMART
SM00213
116 188 73 1.6
IPR000626
ProSiteProfiles
PS50053
116 192 77 12.422
IPR000626
Pfam
PF00240
118 189 72 3.50E-05
IPR000626
Gene3D
G3DSA:3.10.20.90
118 188 71 2.60E-11 –
CDD
cd01769
120 188 69 4.20E-04 –
PANTHER
PTHR10666
225 572 348 0 –
PANTHER
PTHR10666:SF134
225 572 348 0 –
Pfam
PF00454
266 519 254 1.20E-52
IPR000403
SUPERFAMILY
SSF56112
413 570 158 4.08E-08
IPR011009

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 4

Expression data

Expression pattern

Expression pattern of Lj0g3v0201989.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0201989.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.