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Lj0g3v0358289.1

Overview

Field Value
Gene ID Lj0g3v0358289
Transcript ID Lj0g3v0358289.1
Lotus japonicus genome version MG20 v3.0
Description PREDICTED: E3 ubiquitin-protein ligase UPL5-like [Glycine max] gi|356520102|ref|XP_003528704.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SignalP
SignalP-TM_GRAM_POSITIVE
1 26 26 – –
SUPERFAMILY
SSF54236
27 113 87 2.93E-14
IPR029071
PANTHER
PTHR11254
35 41 7 2.00E-41 –
PANTHER
PTHR11254:SF329
35 41 7 2.00E-41 –
ProSiteProfiles
PS50053
36 112 77 17.126
IPR000626
SMART
SM00213
36 108 73 1.20E-07
IPR000626
Pfam
PF00240
39 110 72 2.30E-16
IPR000626
CDD
cd01769
39 108 70 3.26E-10 –
Gene3D
G3DSA:3.10.20.90
46 112 67 3.30E-13 –
PRINTS
PR00348
47 67 21 8.30E-05
IPR019956
PRINTS
PR00348
68 88 21 8.30E-05
IPR019956
PRINTS
PR00348
89 110 22 8.30E-05
IPR019956
PANTHER
PTHR11254
326 530 205 2.00E-41 –
PANTHER
PTHR11254:SF329
326 530 205 2.00E-41 –
SUPERFAMILY
SSF56204
437 529 93 6.80E-15
IPR000569
ProSiteProfiles
PS50237
473 529 57 13.863
IPR000569

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0004842
Molecular function Ubiquitin-protein transferase activity Catalysis of the transfer of ubiquitin from one protein to another via the reaction X-Ub + Y --> Y-Ub + X, where both X-Ub and Y-Ub are covalent linkages.
Subterm of
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 7

Expression data

Expression pattern

Expression pattern of Lj0g3v0358289.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj0g3v0358289.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.