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Lj1g3v5034840.1

Overview

Field Value
Gene ID Lj1g3v5034840
Transcript ID Lj1g3v5034840.1
Lotus japonicus genome version MG20 v3.0
Description Ubiquitin [Medicago truncatula] gi|358349317|ref|XP_003638685.1|
Working Lj name n.a.

Sequence information

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
SUPERFAMILY
SSF54236
32 110 79 4.37E-13
IPR029071
ProSiteProfiles
PS50053
34 109 76 12.705
IPR000626
SMART
SM00213
36 109 74 0.0039
IPR000626
Pfam
PF00240
42 110 69 2.20E-12
IPR000626
Gene3D
G3DSA:3.10.20.90
42 108 67 5.00E-13 –
CDD
cd01769
43 109 67 1.14E-07 –
PANTHER
PTHR10666:SF138
43 190 148 0 –
PANTHER
PTHR10666
43 190 148 0 –
SUPERFAMILY
SSF54236
109 191 83 1.36E-11
IPR029071
SMART
SM00213
114 188 75 0.013
IPR000626
ProSiteProfiles
PS50053
116 182 67 10.658
IPR000626
Gene3D
G3DSA:3.10.20.90
116 191 76 1.30E-11 –
Pfam
PF00240
116 189 74 1.70E-08
IPR000626
PANTHER
PTHR10666
213 230 18 0 –
PANTHER
PTHR10666:SF138
213 230 18 0 –
PANTHER
PTHR10666
247 589 343 0 –
PANTHER
PTHR10666:SF138
247 589 343 0 –
Pfam
PF00454
288 537 250 7.60E-50
IPR000403
SUPERFAMILY
SSF56112
429 590 162 1.12E-07
IPR011009

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0005515
Molecular function Protein binding Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
Subterm of

Genome browser

LORE1 insertions 3

Expression data

Expression pattern

Expression pattern of Lj1g3v5034840.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…

Co-expressed genes

A list of the top 25 highly co-expressed genes of Lj1g3v5034840.1, powered by CORGI.

Loading co-expressed genes from the dataset ljgea-geneid. This will take 20–30 seconds to construct.