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TREX

Transcript Explorer
for L. japonicus reference genomes

The Transcript Explorer tool can be used to search for candidate Lotus genes using user-defined keywords, or to comb a specific genomic interval—a combination of chromosome and position range—for genes/transcripts of interest.

Repeat Search

  • IPR036097
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We have found 37 results. Now displaying 1 of 1 with 50 rows per page. This search has taken 6.362s to perform.

Transcript Name Description Chr Start End Strand Domain predictions GO predictions
LotjaGi1g1v0008500.1
n.a. Histidine kinase; TAIR: AT5G35750.1 histidine kinase 2; Swiss-Prot: sp|Q9C5U2|AHK2_ARATH Histidine kinase 2; TrEMBL-Plants: tr|A0A023W2C6|A0A023W2C6_LOTJA Histidine kinase 2; Found in the gene: LotjaGi1g1v0008500 LjG1.1_chr1 1114796 1127418 -
2 domain predictions
2 GO terms
LotjaGi1g1v0060100.1
n.a. Histidine kinase; TAIR: AT2G47430.1 Signal transduction histidine kinase; Swiss-Prot: sp|O22267|CKI1_ARATH Histidine kinase CKI1; TrEMBL-Plants: tr|V7BJF4|V7BJF4_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0060100 LjG1.1_chr1 8368323 8373712 -
2 domain predictions
2 GO terms
LotjaGi1g1v0373800.1
n.a. Histidine kinase; TAIR: AT5G10720.1 histidine kinase 5; Swiss-Prot: sp|A3BE68|OHK1_ORYSJ Probable histidine kinase 1; TrEMBL-Plants: tr|V7AWB7|V7AWB7_PHAVU Uncharacterized protein; Found in the gene: LotjaGi1g1v0373800 LjG1.1_chr1 85209589 85215639 +
2 domain predictions
2 GO terms
LotjaGi1g1v0762500.1
n.a. Ethylene receptor; TAIR: AT2G40940.1 ethylene response sensor 1; Swiss-Prot: sp|Q38846|ERS1_ARATH Ethylene response sensor 1; TrEMBL-Plants: tr|A0A151S8B3|A0A151S8B3_CAJCA Ethylene receptor; Found in the gene: LotjaGi1g1v0762500 LjG1.1_chr1 133514685 133519558 +
2 domain predictions
2 GO terms
LotjaGi1g1v0762500.2
n.a. Ethylene receptor; TAIR: AT2G40940.1 ethylene response sensor 1; Swiss-Prot: sp|Q38846|ERS1_ARATH Ethylene response sensor 1; TrEMBL-Plants: tr|A0A151S8B3|A0A151S8B3_CAJCA Ethylene receptor; Found in the gene: LotjaGi1g1v0762500 LjG1.1_chr1 133515378 133519076 +
2 domain predictions
2 GO terms
LotjaGi1g1v0786100.1
n.a. Ethylene receptor; TAIR: AT3G04580.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q9ZTP3|EIN4_ARATH Protein EIN4; TrEMBL-Plants: tr|G7L2X0|G7L2X0_MEDTR Ethylene receptor; Found in the gene: LotjaGi1g1v0786100 LjG1.1_chr1 135852775 135857792 -
2 domain predictions
2 GO terms
LotjaGi1g1v0786100.2
n.a. Ethylene receptor; TAIR: AT3G04580.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q9ZTP3|EIN4_ARATH Protein EIN4; TrEMBL-Plants: tr|G7L2X0|G7L2X0_MEDTR Ethylene receptor; Found in the gene: LotjaGi1g1v0786100 LjG1.1_chr1 135853281 135857597 -
2 domain predictions
2 GO terms
LotjaGi1g1v0786100.3
n.a. Ethylene receptor; TAIR: AT3G04580.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q9ZTP3|EIN4_ARATH Protein EIN4; TrEMBL-Plants: tr|G7L2X0|G7L2X0_MEDTR Ethylene receptor; Found in the gene: LotjaGi1g1v0786100 LjG1.1_chr1 135853494 135857299 -
2 domain predictions
2 GO terms
LotjaGi2g1v0003400.1
n.a. Histidine kinase; TAIR: AT2G01830.2 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1439325 1457042 -
2 domain predictions
2 GO terms
LotjaGi2g1v0003400.2
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1439325 1457042 -
2 domain predictions
2 GO terms
LotjaGi2g1v0003400.3
n.a. Histidine kinase; TAIR: AT2G01830.2 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1440759 1456175 -
2 domain predictions
2 GO terms
LotjaGi2g1v0003400.4
n.a. Histidine kinase; TAIR: AT2G01830.2 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1440759 1456800 -
2 domain predictions
2 GO terms
LotjaGi2g1v0003400.5
n.a. Histidine kinase; TAIR: AT2G01830.2 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1440759 1456800 -
2 domain predictions
2 GO terms
LotjaGi2g1v0003400.6
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1443526 1456488 -
2 domain predictions
2 GO terms
LotjaGi2g1v0003400.7
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1448519 1456009 -
2 domain predictions
2 GO terms
LotjaGi2g1v0003400.8
n.a. Histidine kinase; TAIR: AT2G01830.2 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A3QVR9|A3QVR9_LOTJA Histidine kinase 1A; Found in the gene: LotjaGi2g1v0003400 LjG1.1_chr2 1448519 1456009 -
2 domain predictions
2 GO terms
LotjaGi2g1v0379900.1
n.a. Histidine kinase; TAIR: AT2G17820.1 histidine kinase 1; Swiss-Prot: sp|Q9SXL4|AHK1_ARATH Histidine kinase 1; TrEMBL-Plants: tr|A0A0B2RSC6|A0A0B2RSC6_GLYSO Histidine kinase 1; Found in the gene: LotjaGi2g1v0379900 LjG1.1_chr2 87654085 87670051 -
2 domain predictions
2 GO terms
LotjaGi2g1v0379900.2
n.a. Histidine kinase; TAIR: AT2G17820.1 histidine kinase 1; Swiss-Prot: sp|Q9SXL4|AHK1_ARATH Histidine kinase 1; TrEMBL-Plants: tr|A0A0B2RSC6|A0A0B2RSC6_GLYSO Histidine kinase 1; Found in the gene: LotjaGi2g1v0379900 LjG1.1_chr2 87658002 87669871 -
2 domain predictions
2 GO terms
LotjaGi3g1v0054100.1
n.a. Ethylene receptor; TAIR: AT1G66340.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|O81122|ETR1_MALDO Ethylene receptor; TrEMBL-Plants: tr|I1LVH5|I1LVH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0054100 LjG1.1_chr3 5632820 5638974 -
2 domain predictions
2 GO terms
LotjaGi3g1v0054100.2
n.a. Ethylene receptor; TAIR: AT1G66340.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|O81122|ETR1_MALDO Ethylene receptor; TrEMBL-Plants: tr|I1LVH5|I1LVH5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0054100 LjG1.1_chr3 5632920 5639127 -
2 domain predictions
2 GO terms
LotjaGi3g1v0054100.3
n.a. Ethylene receptor; TAIR: AT1G66340.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q9M7M1|ETR1_PRUPE Ethylene receptor; TrEMBL-Plants: tr|K7LB32|K7LB32_SOYBN Uncharacterized protein; Found in the gene: LotjaGi3g1v0054100 LjG1.1_chr3 5633226 5637461 -
2 domain predictions
2 GO terms
LotjaGi3g1v0054100.4
n.a. Ethylene receptor; TAIR: AT1G66340.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|O81122|ETR1_MALDO Ethylene receptor; TrEMBL-Plants: tr|A0A1J7HIG6|A0A1J7HIG6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi3g1v0054100 LjG1.1_chr3 5633226 5637461 -
2 domain predictions
2 GO terms
LotjaGi3g1v0084800_LC.1
n.a. Histidine kinase; TAIR: AT2G17820.1 histidine kinase 1; Swiss-Prot: sp|Q9SXL4|AHK1_ARATH Histidine kinase 1; TrEMBL-Plants: tr|G7JXI9|G7JXI9_MEDTR Osmosensor histidine kinase; Found in the gene: LotjaGi3g1v0084800_LC LjG1.1_chr3 9561114 9561912 -
2 domain predictions
2 GO terms
LotjaGi4g1v0129800.1
n.a. Histidine kinase; TAIR: AT2G17820.1 histidine kinase 1; Swiss-Prot: sp|Q9SXL4|AHK1_ARATH Histidine kinase 1; TrEMBL-Plants: tr|K7MGY5|K7MGY5_SOYBN Uncharacterized protein; Found in the gene: LotjaGi4g1v0129800 LjG1.1_chr4 18987983 18994802 +
2 domain predictions
2 GO terms
LotjaGi4g1v0366900.1
n.a. Histidine kinase; TAIR: AT1G27320.1 histidine kinase 3; Swiss-Prot: sp|Q9C5U1|AHK3_ARATH Histidine kinase 3; TrEMBL-Plants: tr|A0A023W3N9|A0A023W3N9_LOTJA Histidine kinase 3 variant 1; Found in the gene: LotjaGi4g1v0366900 LjG1.1_chr4 74675995 74684564 +
2 domain predictions
2 GO terms
LotjaGi4g1v0366900.2
n.a. Histidine kinase; TAIR: AT1G27320.1 histidine kinase 3; Swiss-Prot: sp|Q9C5U1|AHK3_ARATH Histidine kinase 3; TrEMBL-Plants: tr|A0A023W2K9|A0A023W2K9_LOTJA Histidine kinase 3 variant 2; Found in the gene: LotjaGi4g1v0366900 LjG1.1_chr4 74676046 74684422 +
2 domain predictions
2 GO terms
LotjaGi4g1v0366900.3
n.a. Histidine kinase; TAIR: AT1G27320.1 histidine kinase 3; Swiss-Prot: sp|Q9C5U1|AHK3_ARATH Histidine kinase 3; TrEMBL-Plants: tr|A0A023W2K9|A0A023W2K9_LOTJA Histidine kinase 3 variant 2; Found in the gene: LotjaGi4g1v0366900 LjG1.1_chr4 74676694 74683363 +
2 domain predictions
2 GO terms
LotjaGi4g1v0459800.1
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A0PEY0|A0PEY0_LOTJA Cytokinin receptor 1; Found in the gene: LotjaGi4g1v0459800 LjG1.1_chr4 83061838 83069902 -
2 domain predictions
2 GO terms
LotjaGi4g1v0459800.2
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A0PEY0|A0PEY0_LOTJA Cytokinin receptor 1; Found in the gene: LotjaGi4g1v0459800 LjG1.1_chr4 83061938 83069826 -
2 domain predictions
2 GO terms
LotjaGi4g1v0459800.3
n.a. Histidine kinase; TAIR: AT2G01830.1 CHASE domain containing histidine kinase protein; Swiss-Prot: sp|Q9C5U0|AHK4_ARATH Histidine kinase 4; TrEMBL-Plants: tr|A0PEY0|A0PEY0_LOTJA Cytokinin receptor 1; Found in the gene: LotjaGi4g1v0459800 LjG1.1_chr4 83061985 83069668 -
2 domain predictions
2 GO terms
LotjaGi5g1v0050100.1
n.a. Histidine kinase; TAIR: AT5G10720.1 histidine kinase 5; Swiss-Prot: sp|Q3S4A7|AHK5_ARATH Histidine kinase 5; TrEMBL-Plants: tr|A0A0L9V1D7|A0A0L9V1D7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0050100 LjG1.1_chr5 8435089 8444095 +
2 domain predictions
2 GO terms
LotjaGi5g1v0050100.2
n.a. Histidine kinase; TAIR: AT5G10720.1 histidine kinase 5; Swiss-Prot: sp|Q3S4A7|AHK5_ARATH Histidine kinase 5; TrEMBL-Plants: tr|A0A0L9V1D7|A0A0L9V1D7_PHAAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0050100 LjG1.1_chr5 8436374 8442779 +
2 domain predictions
2 GO terms
LotjaGi5g1v0182400.1
n.a. Ethylene receptor; TAIR: AT3G23150.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q0WPQ2|ETR2_ARATH Ethylene receptor 2; TrEMBL-Plants: tr|A0A1J7GKM4|A0A1J7GKM4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0182400 LjG1.1_chr5 46462080 46466555 +
2 domain predictions
2 GO terms
LotjaGi5g1v0182400.2
n.a. Ethylene receptor; TAIR: AT3G23150.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q0WPQ2|ETR2_ARATH Ethylene receptor 2; TrEMBL-Plants: tr|A0A1J7GKM4|A0A1J7GKM4_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0182400 LjG1.1_chr5 46463053 46466053 +
2 domain predictions
2 GO terms
LotjaGi5g1v0206300.1
n.a. Ethylene receptor like-protein; TAIR: AT3G04580.1 Signal transduction histidine kinase, hybrid-type, ethylene sensor; Swiss-Prot: sp|Q9ZTP3|EIN4_ARATH Protein EIN4; TrEMBL-Plants: tr|A0A0B2Q4A5|A0A0B2Q4A5_GLYSO Protein EIN4; Found in the gene: LotjaGi5g1v0206300 LjG1.1_chr5 50864567 50868817 +
2 domain predictions
2 GO terms
LotjaGi5g1v0245400_LC.1
n.a. Histidine kinase 1; TAIR: AT2G47430.1 Signal transduction histidine kinase; Swiss-Prot: sp|O22267|CKI1_ARATH Histidine kinase CKI1; TrEMBL-Plants: tr|A0A1J7HYZ6|A0A1J7HYZ6_LUPAN Uncharacterized protein; Found in the gene: LotjaGi5g1v0245400_LC LjG1.1_chr5 55377610 55377987 -
2 domain predictions
2 GO terms
LotjaGi6g1v0258900.1
n.a. Phytochrome; TAIR: AT2G18790.1 phytochrome B; Swiss-Prot: sp|P42499|PHYB_SOYBN Phytochrome B; TrEMBL-Plants: tr|A1IIA2|A1IIA2_LOTJA Phytochrome; Found in the gene: LotjaGi6g1v0258900 LjG1.1_chr6 57180524 57188840 +
2 domain predictions
2 GO terms