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| Field | Value |
|---|---|
| Gene ID | LotjaGi6g1v0357900 |
| Transcript ID | LotjaGi6g1v0357900.1 |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | 60S ribosome subunit biogenesis protein NIP7 homolog; TAIR: AT4G15770.1 RNA binding protein; Swiss-Prot: sp|Q6DFH9|NIP7_XENLA 60S ribosome subunit biogenesis protein NIP7 homolog; TrEMBL-Plants: tr|V7CA90|V7CA90_PHAVU 60S ribosome subunit biogenesis protein NIP7 homolog; Found in the gene: LotjaGi6g1v0357900 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr6:66997450..66999474) extracted from Lotus japonicus Gifu genome v1.2.
AATAGTTTAAGACCACCGTTCAGTTGATTTTTATCATTTGTTTTTCCCCCACCCTCCAATTGAGGATAAAATCAACACAA CGAAAAACCCTAATTCCATTAAACCCTGTTGCTAGAGAGAAAGGGAGGAAGAAGAAAGATGAGGCCATTGGACGAGACGG AAACGAGCGTGGTGTTCGAGAAGCTCTTCAAATTCGTCGGCAACAACCTCAAGAACATCGTCGATAATCCTTCTCACGAA GGCCCCGATTCCACCCCTGGCCGCTACTGCTTCCGCCTCCACAAGAACAGGATCTTCTACGCCAGCGAGTCCCTCGTTAA GCGAGCCACCAACGTCGCTCGACCCAGCCTCGTTTCCCTCGGAATCTGCATCGGCAAGTACACTCACAGCGGCAGCTTCC ACCTCACCGTTCAAGCCCTCAACCTGCTCGCTGCTAACGCCAAGCACAAGGTGTGGTTGAAACCCCAGTCTGAGATGTCG TTTCTGTATGGTAATCATGTTCTCAAGGGTGCTCTAGGTCGAATCACCGAGAATATTGCTGCTGGTGATGGGGTTGTTGT GTTTTCCATGGCTGATGTGCCTTTGGGATTTGGGATCGCTGCCAAGTCTACTCAGGATTGCAGGAAGTTGGACCCTAATG GGATTGTTGTGCTGCACCAAGGTGACATTGGAGAGTACTTGAGAATGGAAGATGAGCTTTGAAAGGTTTTTGGTTAGTGG GTTTTTGTTGTGTTCTGTTTAAGCATGATTGATGTGAAATTTTGTTACTTATTGCTGTGTGACAATGGTTATGATTACAT GATTAATTAGAAAGTTGTTTTACTTTTTATATGCTTTATGTAAAATTCCTGAGGATTGGTTATGTTTTCTGATTTGATGA ATGATTAGTAAAGTAGTTTTAACTTTTAAGCTTTCATTTATAAATGTTGGGGCAAAAACCTGAATGATTCTCCATGCATG AATCATGCATGGTTCTTTATGCATTTTGGAGAACATGTGTCATTTAAATGATGTACTTTGCCAATTAACTGTCAATTCTC TCAACTCAGGACATACAGAATATGTTGCTGTTGTTCCAATCCAAATTTATGAGTTGGCAAGTATCTTTTAATGCAAGAAA AGCCGTGTGTCATTCAATAAGAGTTAACACTTAACACCACTCTAATATCATCATTGCTCCATTGTCATGAGTTGTCTTCT TAGCTGCTTGCTTGTGTTGTATTCTTCTTTTCTTTTGGTTTGTGGAGGAAACAATGGCTCTGTTCTGATCAGCTGGATGT TCCTTTCAGTTAGCTTCAATGTTTCAGGTCTTGCTTTGGGAGCATATCTCCCTTGTGCTATGGCACATGTTGACACCATG CTTCTTTAATAGCTATAGCAAATGGTATATTATCTAATATATATATTTTTTCTAGATAGAATTATTCTGGTCACAGGTGG GCTGAATTATTGACTACAGCCTTTGTGTGAAAAGCCTCATATATTGGAAATGAAGTAATGAACTGCTAAATGCTCGCATG AGATGAGATAAATTTTACTCCATGAGTGTCCATTCCAATCCTAGATTTGGAAGCAGCTTCAAAGCATTGCCTAGTCTTTT CTCTAGCTGAGCCGTTTACAGCTCAACAGCAGAAGTCTCCTTTTAGATAATATTACCAAGTAGTGACCAATGGATATAAT TAATTTAGTAGTTGTGAAGGTTGAGGAAGAGGCGGTTGTTGAAGAAGAGGAAGGTGGCATAGGGGGAATAAGTGCTTGTA TCACCTATAAGGTTATGGCCCCGTTTGGAGGAGCTTATTTGAGCTTATCTGATAGCATAAGCTCTTATGTCAGTGTTTGG GAGAGCTTATGCAAACAGCTTATGACATACCATAAGCTGTTTTGAGCTTATTTTCATAAGTTATTCAGGATAGCTTATGA AAAAGAGCTTATGCTTATATGTAGTTTATTTTTAACTTATTTCGATAATAAATTTAAAATAGCTTATGAATAAGCGCTTA TTACCGACATAAGCGCTTAATTAAG
CDS sequence (LotjaGi6g1v0357900.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAGGCCATTGGACGAGACGGAAACGAGCGTGGTGTTCGAGAAGCTCTTCAAATTCGTCGGCAACAACCTCAAGAACAT CGTCGATAATCCTTCTCACGAAGGCCCCGATTCCACCCCTGGCCGCTACTGCTTCCGCCTCCACAAGAACAGGATCTTCT ACGCCAGCGAGTCCCTCGTTAAGCGAGCCACCAACGTCGCTCGACCCAGCCTCGTTTCCCTCGGAATCTGCATCGGCAAG TACACTCACAGCGGCAGCTTCCACCTCACCGTTCAAGCCCTCAACCTGCTCGCTGCTAACGCCAAGCACAAGGTGTGGTT GAAACCCCAGTCTGAGATGTCGTTTCTGTATGGTAATCATGTTCTCAAGGGTGCTCTAGGTCGAATCACCGAGAATATTG CTGCTGGTGATGGGGTTGTTGTGTTTTCCATGGCTGATGTGCCTTTGGGATTTGGGATCGCTGCCAAGTCTACTCAGGAT TGCAGGAAGTTGGACCCTAATGGGATTGTTGTGCTGCACCAAGGTGACATTGGAGAGTACTTGAGAATGGAAGATGAGCT TTGA
Protein sequence (LotjaGi6g1v0357900.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MRPLDETETSVVFEKLFKFVGNNLKNIVDNPSHEGPDSTPGRYCFRLHKNRIFYASESLVKRATNVARPSLVSLGICIGK YTHSGSFHLTVQALNLLAANAKHKVWLKPQSEMSFLYGNHVLKGALGRITENIAAGDGVVVFSMADVPLGFGIAAKSTQD CRKLDPNGIVVLHQGDIGEYLRMEDEL
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 187 | 187 | 9.7E-126 | – | |
| SUPERFAMILY | 1 | 101 | 101 | 1.5E-31 | – | |
| PANTHER | 1 | 187 | 187 | 9.7E-126 | – | |
| Gene3D | 1 | 101 | 101 | 1.9E-36 | – | |
| PIRSF | 1 | 187 | 187 | 1.6E-79 | ||
| Pfam | 2 | 90 | 89 | 3.1E-21 | ||
| ProSiteProfiles | 102 | 178 | 77 | 13.985 | ||
| Gene3D | 102 | 187 | 86 | 8.0E-43 | ||
| SUPERFAMILY | 103 | 178 | 76 | 3.09E-23 | ||
| SMART | 103 | 178 | 76 | 4.0E-17 | ||
| Pfam | 104 | 182 | 79 | 6.3E-23 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Cellular component | Nucleus | A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent. | ||
| Biological process | Ribosome assembly | The aggregation, arrangement and bonding together of the mature ribosome and of its subunits. |
Expression pattern of LotjaGi6g1v0357900.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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