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| Field | Value |
|---|---|
| Gene ID | LotjaGi1g1v0290800 |
| Transcript ID | LotjaGi1g1v0290800.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Malignant T-cell-amplified sequence 1; TAIR: AT1G09150.1 pseudouridine synthase and archaeosine transglycosylase (PUA) domain-containing protein; Swiss-Prot: sp|Q2KIE4|MCTS1_BOVIN Malignant T-cell-amplified sequence 1; TrEMBL-Plants: tr|I3SF98|I3SF98_LOTJA Uncharacterized protein; Found in the gene: LotjaGi1g1v0290800 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr1:70646508..70650751) extracted from Lotus japonicus Gifu genome v1.2.
GGTTAAAAAAATATGAAGAAGGCCCACAATGGTCCAAATACAGAAACATGGATGTGTGCTGTTAGCATCTCTTTTCTCTC TTTACAGTGCAGTTCATGATACAGAGATTCACTCCAAACAGAACCTCCCTTCAGATCAACGCAACAGAAGAAGATGTTCA AAAAGTATGCTCCCTCGTTCTACATTCATTTCTGCAAATTCATGCTTTGTGATTCTCTTTGCACTTGCACCTTTGCTGGT GCTTCTGGGGCCTTAAACCCTAATTTTTCATGTGTCGCATGCCCAATTTCAAGGGCATGAACATGATCTTATTGCTACCC ACAACAATTTTTCATTGAATATTGGATTTTCAATGCGTGTCTTTAGATTTACGTGTGAAAAGATTTGAACTTTTTGGATT TTTTTTTTTTGCAGATTTTCAGGTGAAGAGGTTTCTGCGCAGAATCAAGTGAAGGCGTCTGTTCAACGAAGAATACGGCA AAGCATCGCGGAAGAGGTGATTTCATGTTCTGAAATTGGTTTTTTGATGTTAATTTTTCTCTATGTTTTTCAATTTTGTA CTAACCTCAGTCACTCACTTCACTGCTGCAGTACCCAGGTCTTGAACCAGTGTTGGATGATATACTCCCTAAGAAGTCTC CTCTTATAGTTGCTAAATGGTTAGTCTTTTTCGCGGTGTTTTTTTGCGGCGTTGTGATTTTTATGGTTGCTAACTGTTTG CTTTTTTTTTCCCTTGATGTTTGTAGTCAGAACCATCTCAATCTTGTTCTGGTGAACAATGTGCCTTTGTTTTTCAGTAT CCGGGATGGACCATACATGCCCACGTTGCGACTTCTCCATCAATGTAAAGTTTATATTTCTTGCAATGTTTAACTTGTCT AAAATACTTATTCTTCTGGGAAGTGGTACAAGCTGATGAATTATGAATATTTTAATGTTTTGGATAATGCATACTTGCTG AATAATTTTCAATTAGGATAGGGAAATACATTTTAGGGAAAAATTATAGTTGCTTGTTTTGCATGGTGCAACCAATAACT CTATGAGCTTTTCTAGAAATTGGTTTACAAAGCTTGAAGAAAATAATGTTTAGTTGCATTGTAATTCTTCAACTAAACTA CTGTATACAAAAGGATATGTGGTGAGGAGAACCAAAGTTCTGATTTGTATGATTGTTGTGGCTCTTAAGCAGTTGGCCTA GGCTTTTTCATTTCCTTTTATCGCATCTTTATGTCTAGTCACTAGTGTGGTAATGGAAATTTGGGGGTGTAATTTGGTTC TGTGATAGCAAGAGATCAGGAACATCTGAAAATTGATGTGGTTTATTAACTCCTATTATGCTTATAATATTGTAGTGCTC CAGAATCCAGATCATTTTTTCAAACATATGATAAAATATTAAACTTATGCTTTTGTCTGTTTAGTGGTGGGTGGGAGCCA TAGGATTCATGGTATGACAAGTTATCCTGAACAATATAGAACATGAAGGTCATATGGTTTGTCATCCATTGATGATATAT ATTCAAGCATTAGATTCCTCTGATACCTTGAGAATTGAAAAACTTACCTTCTATTTGCACTCCTCAATCCTTTGCATCGA GATATTGTATATTATTTGTGTTGATATTTTTACCCTACAATATAGAGAATCATGATATGGAATAGGATATAAGTGAAAAA TATGAACTTGGAGAGATGGAGAGACACTCGGAGGAGGGGGGGGGACAAATCATTGTTTTCCTTATTGATACCAGTTTATC ACTTTAGTCATCAATTACGTCCATCTTCACCTTTAAATGCAGGGGTAATTTAGTAATTTGTAAATATGATCATTTCACTT TCTTGGCTTTGACCAAAAGCACTTATGAAGCATCAATAGTTTCTAGGCTCACACGTGGACTTTATGCAATCTGCAATTGT TCATTCATTATATTGCATGTTAACGGTACTATTGATTTGAATTTCACAGATCCAGATATAATGAAGAAATTACAAGTTGA CCGTGGTGCAATAAGATTTGTCTTGGCTGGTGCAAACATAATGTGTCCTGGTCTTACATCTCCTGGAGGTGTTTTGGATG AGGAAGTGGGGGCAGAATGTCCTGTGGTACTGCCATTATAATTTGCATTGATTGTCAATTGTAATGCACAACATAAGCAT CTTGTAGTGAATTTATATTAACTTCCATCCCATATGTATTTATCTGATTTCAGGCCATCATGGCTGAAGGAAAACAGCAT GCTCTTGCTATTGGCTTTACGAAAATGTCAGCAAAAGACATGTAAGAAACTTATCTTATCTCATCTTTTGACTTGACAGG AATGTTGAATGAAATAAATATGATTTTTTTCTTAAATAAATGGAGAACTCTGTCCGATATTCAACATTCGAAGAAAAATT TATGTAAATAGTTGTAGCCTAGGAAGCACGGGTACTTAAAAAATGGTGAAGTACCCATACCGGGTACGTAGCGATGGGTA CGTTCTCCATACGTACCCAAAGATGATTTCAAACAAAAAAATATGGGTACTTATTGGGTACGTTTTTTGTACTGTTTGGG TACTCCATAAGTATTTTTGGGTACTTTTAGGTTATAACTTCAGTTTCATAATGGAACCCTATTTTAATACACATTAGTGG TAATCTTGAATATCTTCAATGTTAAAATGTTTCACTCCATACTCTGCTTAAGGACTTGTTATAATCTATCCTTTAATTTT TTTTGGATCAATATTGTGATATCTTTATTGAATGTTATTTTACTTTAAGCTTTTTCTATATTTTATATATATTTCAATTT TTAGATATATATATATATATATATTAAAAAATATACATATATACTAGCGTATCTGTACTCAGGATTTTATAAAATTGCCG TACCCCGTACCTGCATCCGGTACCGTACCCGTATCTGTGCAACCTAGGTTGTAGCATATCTCTTTATCAGGCGACAACCT CTCGTGTGCAATGCAATCTAGGGCCTAACTACATGTCTAGGTCAGGGTGCAACTGTATCTCAAACAATTTTCTCCCACAA TTGGATAAATTTTTAAGCAAGATCGCTCAGTTAGATAAATCTTCCCCTTGTTTGAAAGCTTTATAGTGTTTACCTGAGTA TGCATTTAGCATCTCCACCTAATTTTTACTTCCTTCCTGTGTGCTGTGGTGGACTTCAACTAGTGGAGTACAAAGCGATT AAGCGAATGATTCACTACTTTTATAGATGACTATTGTGTTGGGTAGCATGTAGATTACTCCCCCCATATGTTGGTAAGGT GCAACTGGAACTAGCTCAACTGAAAATTCAACATTGTACCTCAGTCTTTAAACCTGGAACATCGACTTTACTACCACTTG TATCAATGTTGCTTGCATATGCCTTAGCATTTGTTTTTTATTCAAGAATATAACTTATGGAAACACAGAAATCATGTTCA TCTTCCTTGGTTGATTGTTCTCAAGTTTAACTACTTTCATGGTTTCAGAAAAGCAATCAACAAGGGAATTGGGGTCGACA ACTTGCATTATCTCAATGATGGTCTTTGGAAGGTACTGATTAATATGTGTTTTCCTTCTTATATGTATCATTATTAATAA ATAAGTTTATATAGATATCATATATTTGTTCTTTAATGCACTACCAGCAATAAATACCATGGCTTTTCTTATCCTTTTTT TATTTTTTTTGTTTATGCTTGGATCTTATATATAATAATTATACATGAAAACCAAATCAAGTTTCTAAAGTAACACTTTG ATCCTCCTGAATTCTGCATTCTATACCTAGTGCTTGAGATATTTTCTGCTAATTTCTGATTTATTGTCATTATCCATGCT TACAGATGGAGCAACTTGATTGAAGATGTTGGAAGAGCTACAATGCCTATTAATGATGAATTCCTGTTGTCTAGACCTTG GTCCAGATTTAGGGATCATTGTGGTGCTTTATTTTCTCATACCCTTGTAATCATCAGTAAAGAAATGGATTGTTATACAA ATTGCTGCTCTCTTGGTAATCATGTAGATTTTATGTAACTTATGGAGTACACTATGCATGTTGACAAATACAAAGTTTTG TTCATTTAAGGACTCCAATTGAATGTCGGATCCACGCAAGTAAATTCATTATGTTTGGAAATTTTTTTACCATTGATTCT AACGTCAAAATCAATCATGTAGAGAAGTTTATGTGAATAGCTTTTCGGTAGCATAATTGATTTTGAGAAAAAATTCATCC AAAG
CDS sequence (LotjaGi1g1v0290800.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGTTCAAAAAATTTTCAGGTGAAGAGGTTTCTGCGCAGAATCAAGTGAAGGCGTCTGTTCAACGAAGAATACGGCAAAG CATCGCGGAAGAGTACCCAGGTCTTGAACCAGTGTTGGATGATATACTCCCTAAGAAGTCTCCTCTTATAGTTGCTAAAT GTCAGAACCATCTCAATCTTGTTCTGGTGAACAATGTGCCTTTGTTTTTCAGTATCCGGGATGGACCATACATGCCCACG TTGCGACTTCTCCATCAATATCCAGATATAATGAAGAAATTACAAGTTGACCGTGGTGCAATAAGATTTGTCTTGGCTGG TGCAAACATAATGTGTCCTGGTCTTACATCTCCTGGAGGTGTTTTGGATGAGGAAGTGGGGGCAGAATGTCCTGTGGCCA TCATGGCTGAAGGAAAACAGCATGCTCTTGCTATTGGCTTTACGAAAATGTCAGCAAAAGACATAAAAGCAATCAACAAG GGAATTGGGGTCGACAACTTGCATTATCTCAATGATGGTCTTTGGAAGATGGAGCAACTTGATTGA
Protein sequence (LotjaGi1g1v0290800.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MFKKFSGEEVSAQNQVKASVQRRIRQSIAEEYPGLEPVLDDILPKKSPLIVAKCQNHLNLVLVNNVPLFFSIRDGPYMPT LRLLHQYPDIMKKLQVDRGAIRFVLAGANIMCPGLTSPGGVLDEEVGAECPVAIMAEGKQHALAIGFTKMSAKDIKAINK GIGVDNLHYLNDGLWKMEQLD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 1 | 179 | 179 | 6.0E-97 | – | |
| PIRSF | 1 | 181 | 181 | 1.9E-60 | ||
| PANTHER | 1 | 179 | 179 | 6.0E-97 | ||
| CDD | 3 | 79 | 77 | 1.8078E-44 | – | |
| Pfam | 8 | 88 | 81 | 3.0E-28 | ||
| TIGRFAM | 62 | 172 | 111 | 1.3E-23 | ||
| Gene3D | 85 | 179 | 95 | 3.5E-34 | ||
| ProSiteProfiles | 91 | 171 | 81 | 14.154 | ||
| SUPERFAMILY | 91 | 177 | 87 | 2.61E-18 | ||
| SMART | 92 | 171 | 80 | 6.9E-12 | ||
| Pfam | 93 | 170 | 78 | 5.4E-17 |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. |
Expression pattern of LotjaGi1g1v0290800.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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