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| Field | Value |
|---|---|
| Gene ID | LotjaGi3g1v0298500 |
| Transcript ID | LotjaGi3g1v0298500.3 |
| Related isoforms 3 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Ribosomal RNA large subunit methyltransferase I; TAIR: AT1G54310.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|B4RRY8|RLMI_ALTMD Ribosomal RNA large subunit methyltransferase I; TrEMBL-Plants: tr|A0A151SMM6|A0A151SMM6_CAJCA Ribosomal RNA large subunit methyltransferase I; Found in the gene: LotjaGi3g1v0298500 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr3:62141164..62146897) extracted from Lotus japonicus Gifu genome v1.2.
ATGAAGCTGCTTCCAACGCTCCTCATGAGGTCCCTCTCAACGTGTTCTTTGCCTGCTACTACAACCGCCCTTCAAGAAAT TGCTTCATTTCAACCCAAAGGTTGTCGTCACTTCCCTCTATCTGTATCACTGAATGCTTTATAACTCAGAAAAGCTTGTT TTTTATTTACAAGTGCATTAACTATAAAAAGAAGATGAATTTTGGCTCAAATGCATAGATGGACATGGTCATTTTTTTTT ACTAATTCTTTTACCAAATTTTCAAAATATAAATAAAAATGATTGATGTGTAAAGTAGTACTGTTGTTAGTAAATAGATT AATTCAACTAGATTCTTAGCTCTAACTTTGGTTTGTCTCATTGTCTGTCTAGGCTTGTTACATGTTTAATGTTTTCCCCT ATGTATTTTAAGCAAAATGTCATATAACAGTTGCAATTGTTTTGAATTGTGTCTATCATTTCTAAATTAGTTGCTGGTGC TCCACATTAAAAAAAGAAGGAAAAAGGACCCTAGAAGCACCAACTTTGATGGCTTCATGTATGTGTTCTAAATATACATA CTTGCATATAGTAATATTGGTTGCATCAACAGTCAATGTCATACATGGGGAAAGTCATTCTTTTAAACTCACTGAAACAT TTTATGAATAGTTTTGGTTTGGTAGGTGTTGCAAAGGTTGTTCTGAAAAAGGGGAAGACACAACTCTTCAAGGATGGAAA CCCAATGGTGTACAGCGGAGCCGTTGATAGAATTATTGGGAGGCCGCCTCCGAAGACTGGAGATATTGTTGTGGTAGCAG ATGGGACTGAGAAGCCAATAGGATGGGGCTTGTACAACTCAGTTTCTATGTTCTGTGTTCGGCTTATGCAGTTTGAGGAT GAAGCTATCAGGTTTATGGATATGATTAGTCATTTCTTTCGTTTCCATCTTAGCCCATGGACCAGACCATTGATCTATAA TTTTTTATATACAGCGATTCATCATTTCCATTGAACATGGAAAAACTGCTTGAAACTAGAATTCATGCTGCCGTTGAATT GCGTAGAAGGCTGGGTCTTCCTTCAGTCCATACAAATGCATATCGTTTAATCAATAGTGAGGGTGACAGGTGAGAGATGA ATGGTTTAACTTTTCTTCTTTATGTTAATTTTTAATGTACCCACCTCACTAAATGATTGGTCTATTTGAGCATTACAGTT GAGGATGCAATATATTATATTTTATTTCAACAATGATGCCTTCTAGTTCTAGCTCTTTAATGATACATATATGCATAGCC AACATTCTTCATTTTGGTTAACCATCCTTTTGCAAATAAATGCATTATATTATTTATTTACTGTCATCTTGGAAAATTGC TATGGAGAATATCCTTGATGCATTGTGCTCCTAGTGATCCTTTTGCATATCTCTTTTAATTTGAATGCCTTTCCTTGTAC AGCTTCACAGTTAACACTCTAAGTATGTCTGATCACTGATAATCGCTCTTTCTAGTTCAAATAATAATGCCCCCAAGAAG TTCACTTGCATAATTTTCAATTGGGTTTTACTGGTTCCCTGCAGATTATCAGGATTAATAATTGATGTCTTTGGAGATGT AGCTGTGGTAGCATCATCTGCTGCTTGGGTTGAGAAGTACAAGTCAGAGATAGAGGCATGCATCAGGAAAATTGATTATA TCAATTATATAAATTGGAGGCCATCTATTGATATATTAAAGGAAGATGGAGTTGATGTGTCTGATTTAGAGGATTTGAAT TCATCTACTTGTCCTGAAAGAACAAAGGTATGAGATGATCCATCAAAATGCTGTTCATCAAAATTTTGTATTGTTTTTAA TGTACTTTTCCTTGGTAGCTTTTTATGGAATGCTTAAGCCTGATATTGCACTTGATAATTAAACAGGTACTGCTAGACAA TAGCCTTATATGCCCTCCATTTATTTTTAGTCTTTTATCACATAGATGCATGGCACAAGATAGAATATCTGCAATAAATG ATAAATGCTCCTTAAGGGTCGTCACAAAGTTGAAAAATAGCTGAACCAACCTTTCTACTTTATATTATGTCTAAAGAAGT TTTAATTGGACCTTATCAGTTAAATGGTAACTGTTTTGTGTTCTGTACAGAAAACACACGCTGAAATTTTTATTTGGATC GCAATAAATTAATCTGAAGTTTTTTGTTATTCTTTCATTGTACACATTATATATTTTGCTCCATAAATTATGCTATTATG TCTCTAGAGCTACAGGCCTTAAAAGATAGGGCCTGCAGATTCACCACTAGAACTTTTTGTGTATGTGTTTTATTTTGTGG GGGAGGGGGGTGGGCGGGGAATCAAAAGCTAGTAGATATGGAATTTACTGAGTTTGAGATTTTTGGGGCATGTTTTTCCT ATTTGACAGATCATGGAAAATGGAATTGTGTACACAATTTCACTGAACGGCCAGAAGACTGGATTCTATGCAGATCAGCG TGAGAATCGTCAATGTATATCAAGTATATCAGATGGTCAAAAGGTTCTTGATCTATGTTGCTATAGTGGTGGTTTTGCTT TAAACGCAGTGACTGGAGGTGCTCTTGATGTTACTGGTACATTATATGTTGCTGATTCATTTAATAATTAGGTTGTTCAA CTGAGTCATGCTTGAAATTAAGATGGAAATGATGCATACATCGAACCATCATTTAACAAGTCCAGTATGATTGATTGTAA TCAAGTTCTGGAATTAAACTTGTATTAGGAAAATTTAAGGCACTTAAACCTACCAATCCTGGCTTTACTTTATACTGTAT TTATTTGTATATCAGCTTTTAGTGTATCCCTGGTGGTTAGAGAAAATTATGAATGGCAATGAGCCACTGGCTAACTCAAT ATTTTTAGTCTTACTGCTCTATTTATTCAAATAAATAAAGAGTAGTACAAGAAAGATTTGCCTGGCCCAGTAACTCCTAA TAACCTGAAGCTATTCTCTATCGCTGCTAATAGGATTACTTATATTAGGTGAACTTCTTAACCATGTATGGAATACTCCA AGTAGATTTTAGATTCGTCACGAGAAATGGAGAATAAAATTAGAGTTTATATTATAACTTGATCTTTTCAAAAATACTTT GCAGGAAAAGAACATATACAGGGATATTTTAACTGATTTTTACTATATCATTATTATGAGTACTAGACTGATTTTATTAC TCTGATTATGGCCACGATTTTGATAGGTGTTTATGACTACTAGACTGATTTAATTACTCTGATTATGGCCACGATTTTGA TAGGTGTTGACACATCACTACCAGCTCTAGAGCTTGCTAAAGAAAATGTTGTACTTAACAACATTGATCCAGGAAGAATA TCCTTTTTGAAACAAGATGCAACAAAGTTTATGAAGAATGCTCTCTTGAGAGATGAATCCTGGGATATTGTCATCATTGA TCCTCCTAAAATGGCACCATCAAAAAAGGTATCAATTATGGTGGCAAACATATATTTTGCTATGTTTTGACATAATTTGC AACTTGTGTTCAGTTAACTAAAGGAGTGCCTTTTGAATTATATTAAATTAATACTCGTAGCCTACCCCAACCTAAATGAT TTTTTGTAAGAAAATTTTGAACCATGTCTTCTTTCATGAACCTACTATCTCAAAAGCTTAAATTGTTGGATAAAGATACA TGGGTGGTTTTGTATATATTTCTAACACGCTCTCTCAAGTAAGAGCTCATCGGGCATGATGCATGGACAATGTAGAGGCC GACATTCCGTGTGCTGAAACACAAAATCTATACAATAATTTGGGGTGGGGGGGGGGGAATAAGGATCAAACTCTAGACTA CTTGGTCACAGAGGCTCTTTGATTCAATGTCATGATCCTGCTATCCCAAAAGCTCAAACTGTTGGGTGAAGACATATGAA TGGTTTTATATTATATTTCTAACATCTTCTAACATAATTAAAGAGGATGAGTTCCCTATAATTAGGGTTCTTCCCTAAGC TGCAGTTTTTTTATGGAATTTCTTATTTGGCATTTTCAATGGAAGTTGAGTGTGTACTATGTCCCTAGATCAGTTCTTTG TCATTAGCTTTCGAAGTATACGTAGAAGTAAAGAAGCTAAATTTTTGTGGCAATGTGCAATCTATTCCACACTTTGATGC ATTTTGTTGCCATGAAAGTTAGTATGCATGAGGAGGTTTCTTTTGTACAACATTCATTAGGTGCTTGGTATTTGGTGTAA AGTACATGATCTTTTTAATGGTGGTTCTGATATGACGAGGGATTGAGCAGGTTTATCTGTTGATTTTTCCTTTTATTTTT CTTGTTTTTTTTTTTTGTTTAGCGAATTCCTTATCTTCCCATCTCTTTTGTAATTTTTTTCTTCATCTTAATGAAGTTCT TTTAATAAAATAAAAATGTTTTGTATGATTGTTCCATTTTTACACCTGTTTTTGGAGTAGTTGATTTTGAAACAGTACTA GTGGAAATTGCAAAAGCAGCTCTGACTTCATGTGATGGACGTAGACATGCTTACTGCATGGGAAATATGATTGAGAACAA GGATAAGAATAAGATTATGACTGATTATGACTTTTATGAGCCATTGATTTTCAATGACATTGAGATATATGATTACTTGT GTTCTAAATATAATATTAAACCATTCATATGTCTTACTCAACAGTTTAAGCATTTGGGATAGTTGGTTTCATGACACACT ATGGAATTATGCAGTTAGTGCTTTACTTCAATTTCCTTGGAACTAAAAGCAATTACACGAGAGTAGATCTAGCAAATTCT TGTATGATCTGATGTTGTCTCCAAAATTTTGCAATTTGCAATACCATTGTTGCTTCTGCTCATTTTCAGCTTTCATCTTT CTATCTTCGAAATGTTTGATTAAGATTATGTTACAGGTTCTACATAGTGCATCTGGTATGTACAGAAGTATGAATTCGCT TGCGATGCAACTTACAAAAAGAGGTGGTCTTCTGATGACCTGTTCTTGTTCTGGAGCTGTGACCCAGAGTGGGATATTCC TGCGTATCCTTCAGGTATTAACCTATATGCTGGAGGTTTTATCTGAGATTTATCACCCAATCACTATTTTATTACAGAGA AATTCTTATAGGTCATAATTTTATGTTCATGCTTGAACAGTAGATAATTCTGAAAATAAACAAAATGATTAGTGTAATAT CACTATTATATTAATCTGTCTTCCCATGCGCGATTACTTTACTGGGAAGGCCTTGCAAGTTGCTTAGTGGATAGAAATTT CATGACTAAGAGTAACCTGTCAAATCTAAATCAATGAAATGTTTCTATTCTTTCATTTTACCAGGGTGCAGCATCTATGG CAGGGAGGAAAATCACTGTTCTAAGACAGGCTGGAGCAGCTTGTGATCATCCTATTGATCCGTCATACCCAGAAGGCGCA TACCTATCCAACGTTCTATTAAGAGTTTCATGACTATTACATCAATTAAATTTCTCATATGTAACTTAATATTTTGATGC AATTTTGCAGGGTTTTTTTTTTTTTTTTTTTTTTTATGTTAGAAGAAATGTCTTTTACTCAAATTAATTGAAAAAAAAGA ATCGGTTTATTTCATTTGATTATCTATCATCAAACTGATTTATTCATCATTGAAGTCAAGGTCATGATCCTTAGCATAAC ATGCTCAGCCGCAACATTAGATGAACAAGGGATGAAATCAGCATGAAACCTTGT
CDS sequence (LotjaGi3g1v0298500.3) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGAAGCTGCTTCCAACGCTCCTCATGAGGTCCCTCTCAACGTGTTCTTTGCCTGCTACTACAACCGCCCTTCAAGAAAT TGCTTCATTTCAACCCAAAGGTGTTGCAAAGGTTGTTCTGAAAAAGGGGAAGACACAACTCTTCAAGGATGGAAACCCAA TGGTGTACAGCGGAGCCGTTGATAGAATTATTGGGAGGCCGCCTCCGAAGACTGGAGATATTGTTGTGGTAGCAGATGGG ACTGAGAAGCCAATAGGATGGGGCTTGTACAACTCAGTTTCTATGTTCTGTGTTCGGCTTATGCAGTTTGAGGATGAAGC TATCAGCGATTCATCATTTCCATTGAACATGGAAAAACTGCTTGAAACTAGAATTCATGCTGCCGTTGAATTGCGTAGAA GGCTGGGTCTTCCTTCAGTCCATACAAATGCATATCGTTTAATCAATAGTGAGGGTGACAGATTATCAGGATTAATAATT GATGTCTTTGGAGATGTAGCTGTGGTAGCATCATCTGCTGCTTGGGTTGAGAAGTACAAGTCAGAGATAGAGGCATGCAT CAGGAAAATTGATTATATCAATTATATAAATTGGAGGCCATCTATTGATATATTAAAGGAAGATGGAGTTGATGTGTCTG ATTTAGAGGATTTGAATTCATCTACTTGTCCTGAAAGAACAAAGATCATGGAAAATGGAATTGTGTACACAATTTCACTG AACGGCCAGAAGACTGGATTCTATGCAGATCAGCGTGAGAATCGTCAATGTATATCAAGTATATCAGATGGTCAAAAGGT TCTTGATCTATGTTGCTATAGTGGTGGTTTTGCTTTAAACGCAGTGACTGGAGGTGCTCTTGATGTTACTGGTGTTGACA CATCACTACCAGCTCTAGAGCTTGCTAAAGAAAATGTTGTACTTAACAACATTGATCCAGGAAGAATATCCTTTTTGAAA CAAGATGCAACAAAGTTTATGAAGAATGCTCTCTTGAGAGATGAATCCTGGGATATTGTCATCATTGATCCTCCTAAAAT GGCACCATCAAAAAAGGTTCTACATAGTGCATCTGGTATGTACAGAAGTATGAATTCGCTTGCGATGCAACTTACAAAAA GAGGTGGTCTTCTGATGACCTGTTCTTGTTCTGGAGCTGTGACCCAGAGTGGGATATTCCTGCGTATCCTTCAGGGTGCA GCATCTATGGCAGGGAGGAAAATCACTGTTCTAAGACAGGCTGGAGCAGCTTGTGATCATCCTATTGATCCGTCATACCC AGAAGGCGCATACCTATCCAACTCAAGGTCATGA
Protein sequence (LotjaGi3g1v0298500.3) extracted from Lotus japonicus Gifu v1.2 Proteins.
MKLLPTLLMRSLSTCSLPATTTALQEIASFQPKGVAKVVLKKGKTQLFKDGNPMVYSGAVDRIIGRPPPKTGDIVVVADG TEKPIGWGLYNSVSMFCVRLMQFEDEAISDSSFPLNMEKLLETRIHAAVELRRRLGLPSVHTNAYRLINSEGDRLSGLII DVFGDVAVVASSAAWVEKYKSEIEACIRKIDYINYINWRPSIDILKEDGVDVSDLEDLNSSTCPERTKIMENGIVYTISL NGQKTGFYADQRENRQCISSISDGQKVLDLCCYSGGFALNAVTGGALDVTGVDTSLPALELAKENVVLNNIDPGRISFLK QDATKFMKNALLRDESWDIVIIDPPKMAPSKKVLHSASGMYRSMNSLAMQLTKRGGLLMTCSCSGAVTQSGIFLRILQGA ASMAGRKITVLRQAGAACDHPIDPSYPEGAYLSNSRS
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Phobius | 1 | 23 | 23 | - | – | |
| SignalP_EUK | 1 | 23 | 23 | - | – | |
| Phobius | 1 | 2 | 2 | - | – | |
| SignalP_GRAM_POSITIVE | 1 | 18 | 18 | - | – | |
| SignalP_GRAM_NEGATIVE | 1 | 18 | 18 | - | – | |
| Phobius | 3 | 15 | 13 | - | – | |
| Phobius | 16 | 23 | 8 | - | – | |
| Phobius | 24 | 437 | 414 | - | – | |
| Gene3D | 35 | 106 | 72 | 2.1E-19 | ||
| PANTHER | 36 | 434 | 399 | 3.2E-164 | – | |
| SMART | 36 | 122 | 87 | 1.6E-13 | ||
| SUPERFAMILY | 37 | 107 | 71 | 2.19E-10 | ||
| Pfam | 38 | 102 | 65 | 5.5E-12 | ||
| Gene3D | 117 | 217 | 101 | 5.2E-18 | – | |
| CDD | 120 | 209 | 90 | 5.14216E-24 | – | |
| SUPERFAMILY | 123 | 432 | 310 | 1.45E-58 | ||
| Pfam | 223 | 396 | 174 | 2.9E-20 | ||
| Gene3D | 227 | 436 | 210 | 2.4E-66 | – | |
| CDD | 266 | 381 | 116 | 1.26239E-11 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | RNA binding | Interacting selectively and non-covalently with an RNA molecule or a portion thereof. | ||
| Molecular function | Methyltransferase activity | Catalysis of the transfer of a methyl group to an acceptor molecule. |
Expression pattern of LotjaGi3g1v0298500.3, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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