Your browser is unable to support new features implemented in HTML5 and CSS3 to render this site as intended. Your experience may suffer from functionality degradation but the site should remain usable. We strongly recommend the latest version of Google Chrome, OS X Safari or Mozilla Firefox. As Safari is bundled with OS X, if you are unable to upgrade to a newer version of OS X, we recommend using an open source browser. Dismiss message

LotjaGi3g1v0298500.2

Overview

Field Value
Gene ID LotjaGi3g1v0298500
Transcript ID LotjaGi3g1v0298500.2
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Ribosomal RNA large subunit methyltransferase I; TAIR: AT1G54310.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|B4RRY8|RLMI_ALTMD Ribosomal RNA large subunit methyltransferase I; TrEMBL-Plants: tr|A0A151SMM6|A0A151SMM6_CAJCA Ribosomal RNA large subunit methyltransferase I; Found in the gene: LotjaGi3g1v0298500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:62140854..62147005) extracted from Lotus japonicus Gifu genome v1.2.

TGAAATTGGGCTGGGTGATATAGATAAAGCCCAAACCAGTAACCTCGCGGCCCTTTTTCTCTCATAACAGAGCTCAGTTC ACCGTCTTCTCCCAAGACGGATGAAGAAATGAAGCTGCTTCCAACGCTCCTCATGAGGTCCCTCTCAACGTGTTCTTTGC CTGCTACTACAACCGCCCTTCAAGAAATTGCTTCATTTCAACCCAAAGGTTGTCGTCACTTCCCTCTATCTGTATCACTG AATGCTTTATAACTCAGAAAAGCTTGTTTTTTATTTACAAGTGCATTAACTATAAAAAGAAGATGAATTTTGGCTCAAAT GCATAGATGGACATGGTCATTTTTTTTTACTAATTCTTTTACCAAATTTTCAAAATATAAATAAAAATGATTGATGTGTA AAGTAGTACTGTTGTTAGTAAATAGATTAATTCAACTAGATTCTTAGCTCTAACTTTGGTTTGTCTCATTGTCTGTCTAG GCTTGTTACATGTTTAATGTTTTCCCCTATGTATTTTAAGCAAAATGTCATATAACAGTTGCAATTGTTTTGAATTGTGT CTATCATTTCTAAATTAGTTGCTGGTGCTCCACATTAAAAAAAGAAGGAAAAAGGACCCTAGAAGCACCAACTTTGATGG CTTCATGTATGTGTTCTAAATATACATACTTGCATATAGTAATATTGGTTGCATCAACAGTCAATGTCATACATGGGGAA AGTCATTCTTTTAAACTCACTGAAACATTTTATGAATAGTTTTGGTTTGGTAGGTGTTGCAAAGGTTGTTCTGAAAAAGG GGAAGACACAACTCTTCAAGGATGGAAACCCAATGGTGTACAGCGGAGCCGTTGATAGAATTATTGGGAGGCCGCCTCCG AAGACTGGAGATATTGTTGTGGTAGCAGATGGGACTGAGAAGCCAATAGGATGGGGCTTGTACAACTCAGTTTCTATGTT CTGTGTTCGGCTTATGCAGTTTGAGGATGAAGCTATCAGGTTTATGGATATGATTAGTCATTTCTTTCGTTTCCATCTTA GCCCATGGACCAGACCATTGATCTATAATTTTTTATATACAGCGATTCATCATTTCCATTGAACATGGAAAAACTGCTTG AAACTAGAATTCATGCTGCCGTTGAATTGCGTAGAAGGCTGGGTCTTCCTTCAGTCCATACAAATGCATATCGTTTAATC AATAGTGAGGGTGACAGGTGAGAGATGAATGGTTTAACTTTTCTTCTTTATGTTAATTTTTAATGTACCCACCTCACTAA ATGATTGGTCTATTTGAGCATTACAGTTGAGGATGCAATATATTATATTTTATTTCAACAATGATGCCTTCTAGTTCTAG CTCTTTAATGATACATATATGCATAGCCAACATTCTTCATTTTGGTTAACCATCCTTTTGCAAATAAATGCATTATATTA TTTATTTACTGTCATCTTGGAAAATTGCTATGGAGAATATCCTTGATGCATTGTGCTCCTAGTGATCCTTTTGCATATCT CTTTTAATTTGAATGCCTTTCCTTGTACAGCTTCACAGTTAACACTCTAAGTATGTCTGATCACTGATAATCGCTCTTTC TAGTTCAAATAATAATGCCCCCAAGAAGTTCACTTGCATAATTTTCAATTGGGTTTTACTGGTTCCCTGCAGATTATCAG GATTAATAATTGATGTCTTTGGAGATGTAGCTGTGGTAGCATCATCTGCTGCTTGGGTTGAGAAGTACAAGTCAGAGATA GAGGCATGCATCAGGAAAATTGATTATATCAATTATATAAATTGGAGGCCATCTATTGATATATTAAAGGAAGATGGAGT TGATGTGTCTGATTTAGAGGATTTGAATTCATCTACTTGTCCTGAAAGAACAAAGGTATGAGATGATCCATCAAAATGCT GTTCATCAAAATTTTGTATTGTTTTTAATGTACTTTTCCTTGGTAGCTTTTTATGGAATGCTTAAGCCTGATATTGCACT TGATAATTAAACAGGTACTGCTAGACAATAGCCTTATATGCCCTCCATTTATTTTTAGTCTTTTATCACATAGATGCATG GCACAAGATAGAATATCTGCAATAAATGATAAATGCTCCTTAAGGGTCGTCACAAAGTTGAAAAATAGCTGAACCAACCT TTCTACTTTATATTATGTCTAAAGAAGTTTTAATTGGACCTTATCAGTTAAATGGTAACTGTTTTGTGTTCTGTACAGAA AACACACGCTGAAATTTTTATTTGGATCGCAATAAATTAATCTGAAGTTTTTTGTTATTCTTTCATTGTACACATTATAT ATTTTGCTCCATAAATTATGCTATTATGTCTCTAGAGCTACAGGCCTTAAAAGATAGGGCCTGCAGATTCACCACTAGAA CTTTTTGTGTATGTGTTTTATTTTGTGGGGGAGGGGGGTGGGCGGGGAATCAAAAGCTAGTAGATATGGAATTTACTGAG TTTGAGATTTTTGGGGCATGTTTTTCCTATTTGACAGATCATGGAAAATGGAATTGTGTACACAATTTCACTGAACGGCC AGAAGACTGGATTCTATGCAGATCAGCGTGAGAATCGTCAATGTATATCAAGTATATCAGATGGTCAAAAGGTTCTTGAT CTATGTTGCTATAGTGGTGGTTTTGCTTTAAACGCAGTGACTGGAGGTGCTCTTGATGTTACTGGTACATTATATGTTGC TGATTCATTTAATAATTAGGTTGTTCAACTGAGTCATGCTTGAAATTAAGATGGAAATGATGCATACATCGAACCATCAT TTAACAAGTCCAGTATGATTGATTGTAATCAAGTTCTGGAATTAAACTTGTATTAGGAAAATTTAAGGCACTTAAACCTA CCAATCCTGGCTTTACTTTATACTGTATTTATTTGTATATCAGCTTTTAGTGTATCCCTGGTGGTTAGAGAAAATTATGA ATGGCAATGAGCCACTGGCTAACTCAATATTTTTAGTCTTACTGCTCTATTTATTCAAATAAATAAAGAGTAGTACAAGA AAGATTTGCCTGGCCCAGTAACTCCTAATAACCTGAAGCTATTCTCTATCGCTGCTAATAGGATTACTTATATTAGGTGA ACTTCTTAACCATGTATGGAATACTCCAAGTAGATTTTAGATTCGTCACGAGAAATGGAGAATAAAATTAGAGTTTATAT TATAACTTGATCTTTTCAAAAATACTTTGCAGGAAAAGAACATATACAGGGATATTTTAACTGATTTTTACTATATCATT ATTATGAGTACTAGACTGATTTTATTACTCTGATTATGGCCACGATTTTGATAGGTGTTTATGACTACTAGACTGATTTA ATTACTCTGATTATGGCCACGATTTTGATAGGTGTTGACACATCACTACCAGCTCTAGAGCTTGCTAAAGAAAATGTTGT ACTTAACAACATTGATCCAGGAAGAATATCCTTTTTGAAACAAGATGCAACAAAGTTTATGAAGAATGCTCTCTTGAGAG ATGAATCCTGGGATATTGTCATCATTGATCCTCCTAAAATGGCACCATCAAAAAAGGTATCAATTATGGTGGCAAACATA TATTTTGCTATGTTTTGACATAATTTGCAACTTGTGTTCAGTTAACTAAAGGAGTGCCTTTTGAATTATATTAAATTAAT ACTCGTAGCCTACCCCAACCTAAATGATTTTTTGTAAGAAAATTTTGAACCATGTCTTCTTTCATGAACCTACTATCTCA AAAGCTTAAATTGTTGGATAAAGATACATGGGTGGTTTTGTATATATTTCTAACACGCTCTCTCAAGTAAGAGCTCATCG GGCATGATGCATGGACAATGTAGAGGCCGACATTCCGTGTGCTGAAACACAAAATCTATACAATAATTTGGGGTGGGGGG GGGGGAATAAGGATCAAACTCTAGACTACTTGGTCACAGAGGCTCTTTGATTCAATGTCATGATCCTGCTATCCCAAAAG CTCAAACTGTTGGGTGAAGACATATGAATGGTTTTATATTATATTTCTAACATCTTCTAACATAATTAAAGAGGATGAGT TCCCTATAATTAGGGTTCTTCCCTAAGCTGCAGTTTTTTTATGGAATTTCTTATTTGGCATTTTCAATGGAAGTTGAGTG TGTACTATGTCCCTAGATCAGTTCTTTGTCATTAGCTTTCGAAGTATACGTAGAAGTAAAGAAGCTAAATTTTTGTGGCA ATGTGCAATCTATTCCACACTTTGATGCATTTTGTTGCCATGAAAGTTAGTATGCATGAGGAGGTTTCTTTTGTACAACA TTCATTAGGTGCTTGGTATTTGGTGTAAAGTACATGATCTTTTTAATGGTGGTTCTGATATGACGAGGGATTGAGCAGGT TTATCTGTTGATTTTTCCTTTTATTTTTCTTGTTTTTTTTTTTTGTTTAGCGAATTCCTTATCTTCCCATCTCTTTTGTA ATTTTTTTCTTCATCTTAATGAAGTTCTTTTAATAAAATAAAAATGTTTTGTATGATTGTTCCATTTTTACACCTGTTTT TGGAGTAGTTGATTTTGAAACAGTACTAGTGGAAATTGCAAAAGCAGCTCTGACTTCATGTGATGGACGTAGACATGCTT ACTGCATGGGAAATATGATTGAGAACAAGGATAAGAATAAGATTATGACTGATTATGACTTTTATGAGCCATTGATTTTC AATGACATTGAGATATATGATTACTTGTGTTCTAAATATAATATTAAACCATTCATATGTCTTACTCAACAGTTTAAGCA TTTGGGATAGTTGGTTTCATGACACACTATGGAATTATGCAGTTAGTGCTTTACTTCAATTTCCTTGGAACTAAAAGCAA TTACACGAGAGTAGATCTAGCAAATTCTTGTATGATCTGATGTTGTCTCCAAAATTTTGCAATTTGCAATACCATTGTTG CTTCTGCTCATTTTCAGCTTTCATCTTTCTATCTTCGAAATGTTTGATTAAGATTATGTTACAGGTTCTACATAGTGCAT CTGGTATGTACAGAAGTATGAATTCGCTTGCGATGCAACTTACAAAAAGAGGTGGTCTTCTGATGACCTGTTCTTGTTCT GGAGCTGTGACCCAGAGTGGGATATTCCTGCGTATCCTTCAGGTATTAACCTATATGCTGGAGGTTTTATCTGAGATTTA TCACCCAATCACTATTTTATTACAGAGAAATTCTTATAGGTCATAATTTTATGTTCATGCTTGAACAGTAGATAATTCTG AAAATAAACAAAATGATTAGTGTAATATCACTATTATATTAATCTGTCTTCCCATGCGCGATTACTTTACTGGGAAGGCC TTGCAAGTTGCTTAGTGGATAGAAATTTCATGACTAAGAGTAACCTGTCAAATCTAAATCAATGAAATGTTTCTATTCTT TCATTTTACCAGGGTGCAGCATCTATGGCAGGGAGGAAAATCACTGTTCTAAGACAGGCTGGAGCAGCTTGTGATCATCC TATTGATCCGTCATACCCAGAAGGCGCATACCTATCCAACGTTCTATTAAGAGTTTCATGACTATTACATCAATTAAATT TCTCATATGTAACTTAATATTTTGATGCAATTTTGCAGGGTTTTTTTTTTTTTTTTTTTTTTTATGTTAGAAGAAATGTC TTTTACTCAAATTAATTGAAAAAAAAGAATCGGTTTATTTCATTTGATTATCTATCATCAAACTGATTTATTCATCATTG AAGTCAAGGTCATGATCCTTAGCATAACATGCTCAGCCGCAACATTAGATGAACAAGGGATGAAATCAGCATGAAACCTT GTAAATCAGGATGCAATCTCAAAGATGTCTCGGAAGATTGTTCAGTTATATATTGAGATCCAAATACAATATTGCTGTTA ACATTATTTTGGGTTGCCCTGCAACTATATGTCTGAATTCCATTTATAAATTAGCCTCTCTTTCTACCTCTTATTTCTTA AGCTTTTGTTGCCATGAAGTCACGAAGAATAATGATCTATAGAGGGGCTCATTTGGTATGTTGCATACACTAGATAACCT ATCATATCGTTTAAACAAAATTTATCAAATAATTAACTTTTAAAAATACTTGATAATGTTATTAAATAGTGG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0298500.2) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGAAGCTGCTTCCAACGCTCCTCATGAGGTCCCTCTCAACGTGTTCTTTGCCTGCTACTACAACCGCCCTTCAAGAAAT TGCTTCATTTCAACCCAAAGGTGTTGCAAAGGTTGTTCTGAAAAAGGGGAAGACACAACTCTTCAAGGATGGAAACCCAA TGGTGTACAGCGGAGCCGTTGATAGAATTATTGGGAGGCCGCCTCCGAAGACTGGAGATATTGTTGTGGTAGCAGATGGG ACTGAGAAGCCAATAGGATGGGGCTTGTACAACTCAGTTTCTATGTTCTGTGTTCGGCTTATGCAGTTTGAGGATGAAGC TATCAGCGATTCATCATTTCCATTGAACATGGAAAAACTGCTTGAAACTAGAATTCATGCTGCCGTTGAATTGCGTAGAA GGCTGGGTCTTCCTTCAGTCCATACAAATGCATATCGTTTAATCAATAGTGAGGGTGACAGATTATCAGGATTAATAATT GATGTCTTTGGAGATGTAGCTGTGGTAGCATCATCTGCTGCTTGGGTTGAGAAGTACAAGTCAGAGATAGAGGCATGCAT CAGGAAAATTGATTATATCAATTATATAAATTGGAGGCCATCTATTGATATATTAAAGGAAGATGGAGTTGATGTGTCTG ATTTAGAGGATTTGAATTCATCTACTTGTCCTGAAAGAACAAAGATCATGGAAAATGGAATTGTGTACACAATTTCACTG AACGGCCAGAAGACTGGATTCTATGCAGATCAGCGTGAGAATCGTCAATGTATATCAAGTATATCAGATGGTCAAAAGGT TCTTGATCTATGTTGCTATAGTGGTGGTTTTGCTTTAAACGCAGTGACTGGAGGTGCTCTTGATGTTACTGGTGTTGACA CATCACTACCAGCTCTAGAGCTTGCTAAAGAAAATGTTGTACTTAACAACATTGATCCAGGAAGAATATCCTTTTTGAAA CAAGATGCAACAAAGTTTATGAAGAATGCTCTCTTGAGAGATGAATCCTGGGATATTGTCATCATTGATCCTCCTAAAAT GGCACCATCAAAAAAGGTTCTACATAGTGCATCTGGTATGTACAGAAGTATGAATTCGCTTGCGATGCAACTTACAAAAA GAGGTGGTCTTCTGATGACCTGTTCTTGTTCTGGAGCTGTGACCCAGAGTGGGATATTCCTGCGTATCCTTCAGGGTGCA GCATCTATGGCAGGGAGGAAAATCACTGTTCTAAGACAGGCTGGAGCAGCTTGTGATCATCCTATTGATCCGTCATACCC AGAAGGCGCATACCTATCCAACGTTCTATTAAGAGTTTCATGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0298500.2) extracted from Lotus japonicus Gifu v1.2 Proteins.

MKLLPTLLMRSLSTCSLPATTTALQEIASFQPKGVAKVVLKKGKTQLFKDGNPMVYSGAVDRIIGRPPPKTGDIVVVADG TEKPIGWGLYNSVSMFCVRLMQFEDEAISDSSFPLNMEKLLETRIHAAVELRRRLGLPSVHTNAYRLINSEGDRLSGLII DVFGDVAVVASSAAWVEKYKSEIEACIRKIDYINYINWRPSIDILKEDGVDVSDLEDLNSSTCPERTKIMENGIVYTISL NGQKTGFYADQRENRQCISSISDGQKVLDLCCYSGGFALNAVTGGALDVTGVDTSLPALELAKENVVLNNIDPGRISFLK QDATKFMKNALLRDESWDIVIIDPPKMAPSKKVLHSASGMYRSMNSLAMQLTKRGGLLMTCSCSGAVTQSGIFLRILQGA ASMAGRKITVLRQAGAACDHPIDPSYPEGAYLSNVLLRVS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

Merging data from EBeye. Please wait…

Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Phobius
SIGNAL_PEPTIDE
1 23 23 - –
SignalP_GRAM_NEGATIVE
SignalP-noTM
1 18 18 - –
SignalP_GRAM_POSITIVE
SignalP-TM
1 18 18 - –
Phobius
SIGNAL_PEPTIDE_N_REGION
1 2 2 - –
SignalP_EUK
SignalP-noTM
1 23 23 - –
Phobius
SIGNAL_PEPTIDE_H_REGION
3 15 13 - –
Phobius
SIGNAL_PEPTIDE_C_REGION
16 23 8 - –
Phobius
NON_CYTOPLASMIC_DOMAIN
24 440 417 - –
Gene3D
G3DSA:2.30.130.10
35 106 72 2.2E-19
IPR036974
SMART
SM00359
36 122 87 1.6E-13
IPR002478
PANTHER
PTHR42873
36 439 404 2.3E-166 –
SUPERFAMILY
SSF88697
37 107 71 2.19E-10
IPR015947
Pfam
PF17785
38 102 65 5.6E-12
IPR041532
Gene3D
G3DSA:3.30.750.80
117 217 101 5.3E-18 –
CDD
cd11572
120 209 90 5.26509E-24 –
SUPERFAMILY
SSF53335
123 436 314 4.55E-59
IPR029063
Pfam
PF10672
223 396 174 3.0E-20
IPR019614
Gene3D
G3DSA:3.40.50.150
227 440 214 4.1E-68 –
CDD
cd02440
266 381 116 1.72059E-11 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of

Genome browser

Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0298500.2, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

Loading expression data from ljgea-geneid. Please wait…