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LotjaGi3g1v0298500.1

Overview

Field Value
Gene ID LotjaGi3g1v0298500
Transcript ID LotjaGi3g1v0298500.1
Related isoforms 3
Lotus japonicus genome version Gifu v1.2
Description Ribosomal RNA large subunit methyltransferase I; TAIR: AT1G54310.2 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein; Swiss-Prot: sp|B4RRY8|RLMI_ALTMD Ribosomal RNA large subunit methyltransferase I; TrEMBL-Plants: tr|A0A151SMM6|A0A151SMM6_CAJCA Ribosomal RNA large subunit methyltransferase I; Found in the gene: LotjaGi3g1v0298500
Working Lj name n.a.

Sequence information

Genomic sequence (LjG1.1_chr3:62140854..62147005) extracted from Lotus japonicus Gifu genome v1.2.

TGAAATTGGGCTGGGTGATATAGATAAAGCCCAAACCAGTAACCTCGCGGCCCTTTTTCTCTCATAACAGAGCTCAGTTC ACCGTCTTCTCCCAAGACGGATGAAGAAATGAAGCTGCTTCCAACGCTCCTCATGAGGTCCCTCTCAACGTGTTCTTTGC CTGCTACTACAACCGCCCTTCAAGAAATTGCTTCATTTCAACCCAAAGGTTGTCGTCACTTCCCTCTATCTGTATCACTG AATGCTTTATAACTCAGAAAAGCTTGTTTTTTATTTACAAGTGCATTAACTATAAAAAGAAGATGAATTTTGGCTCAAAT GCATAGATGGACATGGTCATTTTTTTTTACTAATTCTTTTACCAAATTTTCAAAATATAAATAAAAATGATTGATGTGTA AAGTAGTACTGTTGTTAGTAAATAGATTAATTCAACTAGATTCTTAGCTCTAACTTTGGTTTGTCTCATTGTCTGTCTAG GCTTGTTACATGTTTAATGTTTTCCCCTATGTATTTTAAGCAAAATGTCATATAACAGTTGCAATTGTTTTGAATTGTGT CTATCATTTCTAAATTAGTTGCTGGTGCTCCACATTAAAAAAAGAAGGAAAAAGGACCCTAGAAGCACCAACTTTGATGG CTTCATGTATGTGTTCTAAATATACATACTTGCATATAGTAATATTGGTTGCATCAACAGTCAATGTCATACATGGGGAA AGTCATTCTTTTAAACTCACTGAAACATTTTATGAATAGTTTTGGTTTGGTAGGTGTTGCAAAGGTTGTTCTGAAAAAGG GGAAGACACAACTCTTCAAGGATGGAAACCCAATGGTGTACAGCGGAGCCGTTGATAGAATTATTGGGAGGCCGCCTCCG AAGACTGGAGATATTGTTGTGGTAGCAGATGGGACTGAGAAGCCAATAGGATGGGGCTTGTACAACTCAGTTTCTATGTT CTGTGTTCGGCTTATGCAGTTTGAGGATGAAGCTATCAGGTTTATGGATATGATTAGTCATTTCTTTCGTTTCCATCTTA GCCCATGGACCAGACCATTGATCTATAATTTTTTATATACAGCGATTCATCATTTCCATTGAACATGGAAAAACTGCTTG AAACTAGAATTCATGCTGCCGTTGAATTGCGTAGAAGGCTGGGTCTTCCTTCAGTCCATACAAATGCATATCGTTTAATC AATAGTGAGGGTGACAGGTGAGAGATGAATGGTTTAACTTTTCTTCTTTATGTTAATTTTTAATGTACCCACCTCACTAA ATGATTGGTCTATTTGAGCATTACAGTTGAGGATGCAATATATTATATTTTATTTCAACAATGATGCCTTCTAGTTCTAG CTCTTTAATGATACATATATGCATAGCCAACATTCTTCATTTTGGTTAACCATCCTTTTGCAAATAAATGCATTATATTA TTTATTTACTGTCATCTTGGAAAATTGCTATGGAGAATATCCTTGATGCATTGTGCTCCTAGTGATCCTTTTGCATATCT CTTTTAATTTGAATGCCTTTCCTTGTACAGCTTCACAGTTAACACTCTAAGTATGTCTGATCACTGATAATCGCTCTTTC TAGTTCAAATAATAATGCCCCCAAGAAGTTCACTTGCATAATTTTCAATTGGGTTTTACTGGTTCCCTGCAGATTATCAG GATTAATAATTGATGTCTTTGGAGATGTAGCTGTGGTAGCATCATCTGCTGCTTGGGTTGAGAAGTACAAGTCAGAGATA GAGGCATGCATCAGGAAAATTGATTATATCAATTATATAAATTGGAGGCCATCTATTGATATATTAAAGGAAGATGGAGT TGATGTGTCTGATTTAGAGGATTTGAATTCATCTACTTGTCCTGAAAGAACAAAGGTATGAGATGATCCATCAAAATGCT GTTCATCAAAATTTTGTATTGTTTTTAATGTACTTTTCCTTGGTAGCTTTTTATGGAATGCTTAAGCCTGATATTGCACT TGATAATTAAACAGGTACTGCTAGACAATAGCCTTATATGCCCTCCATTTATTTTTAGTCTTTTATCACATAGATGCATG GCACAAGATAGAATATCTGCAATAAATGATAAATGCTCCTTAAGGGTCGTCACAAAGTTGAAAAATAGCTGAACCAACCT TTCTACTTTATATTATGTCTAAAGAAGTTTTAATTGGACCTTATCAGTTAAATGGTAACTGTTTTGTGTTCTGTACAGAA AACACACGCTGAAATTTTTATTTGGATCGCAATAAATTAATCTGAAGTTTTTTGTTATTCTTTCATTGTACACATTATAT ATTTTGCTCCATAAATTATGCTATTATGTCTCTAGAGCTACAGGCCTTAAAAGATAGGGCCTGCAGATTCACCACTAGAA CTTTTTGTGTATGTGTTTTATTTTGTGGGGGAGGGGGGTGGGCGGGGAATCAAAAGCTAGTAGATATGGAATTTACTGAG TTTGAGATTTTTGGGGCATGTTTTTCCTATTTGACAGATCATGGAAAATGGAATTGTGTACACAATTTCACTGAACGGCC AGAAGACTGGATTCTATGCAGATCAGCGTGAGAATCGTCAATGTATATCAAGTATATCAGATGGTCAAAAGGTTCTTGAT CTATGTTGCTATAGTGGTGGTTTTGCTTTAAACGCAGTGACTGGAGGTGCTCTTGATGTTACTGGTACATTATATGTTGC TGATTCATTTAATAATTAGGTTGTTCAACTGAGTCATGCTTGAAATTAAGATGGAAATGATGCATACATCGAACCATCAT TTAACAAGTCCAGTATGATTGATTGTAATCAAGTTCTGGAATTAAACTTGTATTAGGAAAATTTAAGGCACTTAAACCTA CCAATCCTGGCTTTACTTTATACTGTATTTATTTGTATATCAGCTTTTAGTGTATCCCTGGTGGTTAGAGAAAATTATGA ATGGCAATGAGCCACTGGCTAACTCAATATTTTTAGTCTTACTGCTCTATTTATTCAAATAAATAAAGAGTAGTACAAGA AAGATTTGCCTGGCCCAGTAACTCCTAATAACCTGAAGCTATTCTCTATCGCTGCTAATAGGATTACTTATATTAGGTGA ACTTCTTAACCATGTATGGAATACTCCAAGTAGATTTTAGATTCGTCACGAGAAATGGAGAATAAAATTAGAGTTTATAT TATAACTTGATCTTTTCAAAAATACTTTGCAGGAAAAGAACATATACAGGGATATTTTAACTGATTTTTACTATATCATT ATTATGAGTACTAGACTGATTTTATTACTCTGATTATGGCCACGATTTTGATAGGTGTTTATGACTACTAGACTGATTTA ATTACTCTGATTATGGCCACGATTTTGATAGGTGTTGACACATCACTACCAGCTCTAGAGCTTGCTAAAGAAAATGTTGT ACTTAACAACATTGATCCAGGAAGAATATCCTTTTTGAAACAAGATGCAACAAAGTTTATGAAGAATGCTCTCTTGAGAG ATGAATCCTGGGATATTGTCATCATTGATCCTCCTAAAATGGCACCATCAAAAAAGGTATCAATTATGGTGGCAAACATA TATTTTGCTATGTTTTGACATAATTTGCAACTTGTGTTCAGTTAACTAAAGGAGTGCCTTTTGAATTATATTAAATTAAT ACTCGTAGCCTACCCCAACCTAAATGATTTTTTGTAAGAAAATTTTGAACCATGTCTTCTTTCATGAACCTACTATCTCA AAAGCTTAAATTGTTGGATAAAGATACATGGGTGGTTTTGTATATATTTCTAACACGCTCTCTCAAGTAAGAGCTCATCG GGCATGATGCATGGACAATGTAGAGGCCGACATTCCGTGTGCTGAAACACAAAATCTATACAATAATTTGGGGTGGGGGG GGGGGAATAAGGATCAAACTCTAGACTACTTGGTCACAGAGGCTCTTTGATTCAATGTCATGATCCTGCTATCCCAAAAG CTCAAACTGTTGGGTGAAGACATATGAATGGTTTTATATTATATTTCTAACATCTTCTAACATAATTAAAGAGGATGAGT TCCCTATAATTAGGGTTCTTCCCTAAGCTGCAGTTTTTTTATGGAATTTCTTATTTGGCATTTTCAATGGAAGTTGAGTG TGTACTATGTCCCTAGATCAGTTCTTTGTCATTAGCTTTCGAAGTATACGTAGAAGTAAAGAAGCTAAATTTTTGTGGCA ATGTGCAATCTATTCCACACTTTGATGCATTTTGTTGCCATGAAAGTTAGTATGCATGAGGAGGTTTCTTTTGTACAACA TTCATTAGGTGCTTGGTATTTGGTGTAAAGTACATGATCTTTTTAATGGTGGTTCTGATATGACGAGGGATTGAGCAGGT TTATCTGTTGATTTTTCCTTTTATTTTTCTTGTTTTTTTTTTTTGTTTAGCGAATTCCTTATCTTCCCATCTCTTTTGTA ATTTTTTTCTTCATCTTAATGAAGTTCTTTTAATAAAATAAAAATGTTTTGTATGATTGTTCCATTTTTACACCTGTTTT TGGAGTAGTTGATTTTGAAACAGTACTAGTGGAAATTGCAAAAGCAGCTCTGACTTCATGTGATGGACGTAGACATGCTT ACTGCATGGGAAATATGATTGAGAACAAGGATAAGAATAAGATTATGACTGATTATGACTTTTATGAGCCATTGATTTTC AATGACATTGAGATATATGATTACTTGTGTTCTAAATATAATATTAAACCATTCATATGTCTTACTCAACAGTTTAAGCA TTTGGGATAGTTGGTTTCATGACACACTATGGAATTATGCAGTTAGTGCTTTACTTCAATTTCCTTGGAACTAAAAGCAA TTACACGAGAGTAGATCTAGCAAATTCTTGTATGATCTGATGTTGTCTCCAAAATTTTGCAATTTGCAATACCATTGTTG CTTCTGCTCATTTTCAGCTTTCATCTTTCTATCTTCGAAATGTTTGATTAAGATTATGTTACAGGTTCTACATAGTGCAT CTGGTATGTACAGAAGTATGAATTCGCTTGCGATGCAACTTACAAAAAGAGGTGGTCTTCTGATGACCTGTTCTTGTTCT GGAGCTGTGACCCAGAGTGGGATATTCCTGCGTATCCTTCAGGTATTAACCTATATGCTGGAGGTTTTATCTGAGATTTA TCACCCAATCACTATTTTATTACAGAGAAATTCTTATAGGTCATAATTTTATGTTCATGCTTGAACAGTAGATAATTCTG AAAATAAACAAAATGATTAGTGTAATATCACTATTATATTAATCTGTCTTCCCATGCGCGATTACTTTACTGGGAAGGCC TTGCAAGTTGCTTAGTGGATAGAAATTTCATGACTAAGAGTAACCTGTCAAATCTAAATCAATGAAATGTTTCTATTCTT TCATTTTACCAGGGTGCAGCATCTATGGCAGGGAGGAAAATCACTGTTCTAAGACAGGCTGGAGCAGCTTGTGATCATCC TATTGATCCGTCATACCCAGAAGGCGCATACCTATCCAACGTTCTATTAAGAGTTTCATGACTATTACATCAATTAAATT TCTCATATGTAACTTAATATTTTGATGCAATTTTGCAGGGTTTTTTTTTTTTTTTTTTTTTTTATGTTAGAAGAAATGTC TTTTACTCAAATTAATTGAAAAAAAAGAATCGGTTTATTTCATTTGATTATCTATCATCAAACTGATTTATTCATCATTG AAGTCAAGGTCATGATCCTTAGCATAACATGCTCAGCCGCAACATTAGATGAACAAGGGATGAAATCAGCATGAAACCTT GTAAATCAGGATGCAATCTCAAAGATGTCTCGGAAGATTGTTCAGTTATATATTGAGATCCAAATACAATATTGCTGTTA ACATTATTTTGGGTTGCCCTGCAACTATATGTCTGAATTCCATTTATAAATTAGCCTCTCTTTCTACCTCTTATTTCTTA AGCTTTTGTTGCCATGAAGTCACGAAGAATAATGATCTATAGAGGGGCTCATTTGGTATGTTGCATACACTAGATAACCT ATCATATCGTTTAAACAAAATTTATCAAATAATTAACTTTTAAAAATACTTGATAATGTTATTAAATAGTGG
Download Genomic Sequence

CDS sequence (LotjaGi3g1v0298500.1) extracted from Lotus japonicus Gifu v1.2 CDS.

ATGTCATACATGGGGAAAGTCATTCTTTTAAACTCACTGAAACATTTTATGAATAGTTTTGGTTTGGTAGGTGTTGCAAA GGTTGTTCTGAAAAAGGGGAAGACACAACTCTTCAAGGATGGAAACCCAATGGTGTACAGCGGAGCCGTTGATAGAATTA TTGGGAGGCCGCCTCCGAAGACTGGAGATATTGTTGTGGTAGCAGATGGGACTGAGAAGCCAATAGGATGGGGCTTGTAC AACTCAGTTTCTATGTTCTGTGTTCGGCTTATGCAGTTTGAGGATGAAGCTATCAGCGATTCATCATTTCCATTGAACAT GGAAAAACTGCTTGAAACTAGAATTCATGCTGCCGTTGAATTGCGTAGAAGGCTGGGTCTTCCTTCAGTCCATACAAATG CATATCGTTTAATCAATAGTGAGGGTGACAGATTATCAGGATTAATAATTGATGTCTTTGGAGATGTAGCTGTGGTAGCA TCATCTGCTGCTTGGGTTGAGAAGTACAAGTCAGAGATAGAGGCATGCATCAGGAAAATTGATTATATCAATTATATAAA TTGGAGGCCATCTATTGATATATTAAAGGAAGATGGAGTTGATGTGTCTGATTTAGAGGATTTGAATTCATCTACTTGTC CTGAAAGAACAAAGATCATGGAAAATGGAATTGTGTACACAATTTCACTGAACGGCCAGAAGACTGGATTCTATGCAGAT CAGCGTGAGAATCGTCAATGTATATCAAGTATATCAGATGGTCAAAAGGTTCTTGATCTATGTTGCTATAGTGGTGGTTT TGCTTTAAACGCAGTGACTGGAGGTGCTCTTGATGTTACTGGTGTTGACACATCACTACCAGCTCTAGAGCTTGCTAAAG AAAATGTTGTACTTAACAACATTGATCCAGGAAGAATATCCTTTTTGAAACAAGATGCAACAAAGTTTATGAAGAATGCT CTCTTGAGAGATGAATCCTGGGATATTGTCATCATTGATCCTCCTAAAATGGCACCATCAAAAAAGGTTCTACATAGTGC ATCTGGTATGTACAGAAGTATGAATTCGCTTGCGATGCAACTTACAAAAAGAGGTGGTCTTCTGATGACCTGTTCTTGTT CTGGAGCTGTGACCCAGAGTGGGATATTCCTGCGTATCCTTCAGGGTGCAGCATCTATGGCAGGGAGGAAAATCACTGTT CTAAGACAGGCTGGAGCAGCTTGTGATCATCCTATTGATCCGTCATACCCAGAAGGCGCATACCTATCCAACGTTCTATT AAGAGTTTCATGA
Download CDS Sequence

Protein sequence (LotjaGi3g1v0298500.1) extracted from Lotus japonicus Gifu v1.2 Proteins.

MSYMGKVILLNSLKHFMNSFGLVGVAKVVLKKGKTQLFKDGNPMVYSGAVDRIIGRPPPKTGDIVVVADGTEKPIGWGLY NSVSMFCVRLMQFEDEAISDSSFPLNMEKLLETRIHAAVELRRRLGLPSVHTNAYRLINSEGDRLSGLIIDVFGDVAVVA SSAAWVEKYKSEIEACIRKIDYINYINWRPSIDILKEDGVDVSDLEDLNSSTCPERTKIMENGIVYTISLNGQKTGFYAD QRENRQCISSISDGQKVLDLCCYSGGFALNAVTGGALDVTGVDTSLPALELAKENVVLNNIDPGRISFLKQDATKFMKNA LLRDESWDIVIIDPPKMAPSKKVLHSASGMYRSMNSLAMQLTKRGGLLMTCSCSGAVTQSGIFLRILQGAASMAGRKITV LRQAGAACDHPIDPSYPEGAYLSNVLLRVS
Download Protein Sequence

Domain prediction

Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.

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Domains

Sorting

Prediction algorithm Identifier Start End Length E-value InterPro ID
Gene3D
G3DSA:2.30.130.10
25 96 72 2.1E-19
IPR036974
PANTHER
PTHR42873
26 429 404 2.0E-166 –
SMART
SM00359
26 112 87 1.6E-13
IPR002478
SUPERFAMILY
SSF88697
27 97 71 2.19E-10
IPR015947
Pfam
PF17785
28 92 65 5.4E-12
IPR041532
Gene3D
G3DSA:3.30.750.80
107 207 101 5.1E-18 –
CDD
cd11572
110 199 90 6.63713E-24 –
SUPERFAMILY
SSF53335
113 426 314 4.22E-59
IPR029063
Pfam
PF10672
213 386 174 2.8E-20
IPR019614
Gene3D
G3DSA:3.40.50.150
217 430 214 3.9E-68 –
CDD
cd02440
256 371 116 3.0034E-11 –

Gene function (GO predictions)

GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .

GO term Namespace Name Definition Relationships
GO:0003723
Molecular function RNA binding Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
Subterm of
GO:0008168
Molecular function Methyltransferase activity Catalysis of the transfer of a methyl group to an acceptor molecule.
Subterm of

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Expression data

Expression pattern

Expression pattern of LotjaGi3g1v0298500.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.

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