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| Field | Value |
|---|---|
| Gene ID | LotjaGi2g1v0305200 |
| Transcript ID | LotjaGi2g1v0305200.1 |
| Related isoforms 2 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | Uroporphyrinogen decarboxylase; TAIR: AT3G14930.1 Uroporphyrinogen decarboxylase; Swiss-Prot: sp|Q93ZB6|DCUP1_ARATH Uroporphyrinogen decarboxylase 1, chloroplastic; TrEMBL-Plants: tr|I3SP94|I3SP94_LOTJA Uroporphyrinogen decarboxylase; Found in the gene: LotjaGi2g1v0305200 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr2:77853737..77858298) extracted from Lotus japonicus Gifu genome v1.2.
CATGACAGGGATAATATAGTTCTTTCAATAATTTCGGTGAAGGTAGTCCCCACTGTGAGAATGGTCGAAGGGGGAAGAAG AAGACGAAGGCGAGGTTTGAATTGAGGGATAAGGCTAAAATCTGCAGAACCTTCGTTCCATCTCTGCACATGGCTACTTC CATTAACAGGTTCTAACTCTCTCTCTTTCTCCCTGATTTTCTCTCTTTCTCAGATGAATTTTGAGTTCAATGTTGTTATG ACCTGTTAATTTCTTTGTTTTCAGCTGTGGGTTGGGATGGAAATCTTCCACCTTGTTTGCACACTCTACTACTACTGGCT TCAATTCAATTTCTCCTTCTTTCAAACCAAAACCCAAGCTTTCTCTCACTTGCTCCGCTGCCTCCTCTTCTTCTGGTACC CTCCTTCGCTCAACATTTTCAACACCACTTGTTTCTTATAAGTTATATGGGATTGGGTGCTTATAATTTGTGGGTTTCAA TAAAGTTTTAAACTTGCTGCTGTATCAATGAGTTATTGACTTTGAACAAACATTGTTCTTATAGCCCACTCATTCTCATG ACAGATTTTGATCATTGCTTTATTGGTTAGAAAACCTATAATAGTCACTCTTTTGGTTTATTAATTTTAACTTCACAGAC TTTGCATTTCATGATGTGCCCACCTCCATGCCCATGGTAATAATTATGCTTAATTTGAATTGGGGTTTTTGTTTGGGTTT ATTTTGGAATCAAAATGTAGGTTCTGTATCTATGACATTATATCAATTGTGGGATCTTGGGGTGTATTGTGATTCATACT TCTTGTTAGCACTGATCATTGTCATTGTATGATTGAAGGAAAGAATTATTCAGATGTCAAATTAATTTTCTTGGGTTGAT TGCTGAATATGATTGAAGGAATGAAGGCGGGAGAGGGGGGGGGGGTGTTGTTGTTAGAAGAGTAAATTATCATTTGTGCC TAGAAGCTGTTTAACTTAGTTTCAGTATTTGCAATTGTCTATTGGTCCATTTGGCAAGGAATTTGGTTCTCCTATATTAA GGTCGTAGCTTTTCATTTGAGTTGATTAGGATTCGTATCGGTTCAAAATTGACTTTTAGATAACAAGGATCTTAAAAAAA CTATCCAAGGTCTTAGAAAATAAGTTATATCATTTAAAACTTCAAAAAATCCTATTGATCCTCTTATTCTCTCCCTTCAT TATCCTCCTATTCTCTCCCTCGTTCATTCTCTTCAGTCTCTTATTCATACATCAACGTCGAGGCATACATGCAAGAGAAA TTGACTTGGATGTTGTGTTTCATTTTATTCAGATCCGCTCTTGGTTAAGGCTGCTAGGGGAGATCCTGTTAGTCGTCCTC CAGCATGGATGATGCGCCAGGCGGGAAGGTACATGGCTGTTTACAGAAAGCTTGCTGAGAAGCATCCCTCATTTCGAGAG AGATCAGAGACAACTGATCTCATTGTGGAAATTTCTTTGCAGCCTTGGAAAGCTTTCAGGCCTGATGGAGTGATTATTTT CTCTGACATCCTTACACCTCTACCTGCATTTGGAATTGAATTTGACATAGAAGATGTAAAGGGACCTGTTATACAGTCAC CTATTCGCTCTGAGGAGGGATTAAAGGCTTTGCACTCAATCGACTTGGACAGACTTAGATTTGTTGGAGATTCACTTAAG CTCCTGCGCCAGGAGGTACAATATAGTTACATCAGCTCATCTGCGGTGTGTTTGGATTTCTGTTCTGAAAACTTAAATGT ACTTTCAATGAAAATCCATGTCTCTGTAATGGATTGGGATGAAAGTTCTTTTAGATCAATGTAATGTAAATCCAAACACG CTTAGCCTGTTCCCATTTCTAATTCATTTTTTCTGTAGGTTGGTGGTCATGCTGCCGTTTTGGGTTTTGTGGGAGCACCT TGGACATTGGCAACATATATAGTGGAAGGGGGTACAACACGCACTTACACAACCATTAAGAGCATGTGCCATACAGCACC AGACATATTGAGGACTCTGCTTTCTCATTTGTCACAGGCGATAGCAGATTACATTGTTTTCCAAGTTGAATCTGGGGCTC ACTGCATACAAATATTTGATTCTTGGGGTGGACAATTACCACCTAGTATGTGGGAAAGCTGGTCAAAGCCTTATATCACC GAGGTAACTAAGGAAAATTCTTTCTTCCCTGATAATTTTGTGTTTTAATGTTTTAAACTTTTCAATGTTAAGCCTAACAT TGGAAATTTTCTTCAGTTGAAGAAAGTAAAAATACATAGCTTGATGAGCTTTGCAAAAATTATTAGGTTTTATGTCAAGT TAATTTTGTATTGTTCCAAGCATCCATCATTATTCTTGGTTAGTTGACCTGGTAAAGAATATAATAAAAGCTTGTAATAT GTAATTTCTCATGGGTAAAAAACCTTGCTATTTGTGAGCCTTGATTAATAAATGAGCTCATTGGAAGTTAATCATGCTTT TGACTTCAGGAGAGAGAAATCCAAATCAGAGGCGGTATCTTCACATTTTTATAAATATAGTTGAGATAAATACTACTGTT AGTATCTTTTCTTATTTTACAATTGAATAAAATTAGCAAATTGAAGGTTGCATACTATCATGCCAATCTCCTCTTTTTAT CCTTTTCATCACGCACTGCTTTTTGAACTTCCAGATTGTAAAAGTGGTCAAGAAAAAATGCCCCGAGACACCAATCGTTC TTTATATAAATGGAAATGGCGGCCTTCTCGAGCGTATGGTAGACACTGGAGTTGATGTTATTGGACTAGACTGGACAGTG GATATGGCAGATGGAAGAAGAAGATTGGGTAGTGGGATAGGTGTGCAGGGAAATGTGGACCCTGCCTCCCTATTCTCCCC TCTTTCTTCCCTTACTGAAGAAATTCAGAGGTTGGTAACAACATATCTATGACCTTTGGTATTTTTTTATGTCATTCTGA TAGGTACCAACAGTAAATGAGAAGAAAAATTGTTATTATTCACCAATATCAATGAACTACAATTACTGGTTGTTTGAGAG AACCAGCACACTCCCTAGAATTCCCTTACTACAAACAAGACACCCTAACTATTCTCATATCCCTCTTATTTATAGTCTTG CTTCACTCTCTCTAATCTCTAACCAACTCTCTAACTAACAACATGATTTCCCTAACTAACTAACTAAATAACTAAAGGGT GGTTATCTATCACAATCTATATGGTTGTTTGCATATTTGGTCTAAGGGAGCTACACCACTGAGTGGTGTCTAAGCTTAAG TGATGGGAGGAAGGGGAATCGGAAAGAGATTTTCCATCAGGGGGTGCTGAACCTGATACTGGGATGTTCCAGACAAATGT CCAGGCTGTATTGTTTCTGTCCATGATCCATTATCTAAGCTGTGTCGGTTGATACCTCCCCCAACATTTGCCTATTAACG GCAGAACTGAAAATAATGATACGAGTCAGGGAAACTGGCCAAGAATCAGGCAATATTCTTTATCTTGTTCACGAAGCTAC AATATGTAACTTTTACTCTCGACATGCATTGGATTCTGTGTCAAACTGGCAGCCATACGTGTAGTATGTGTGTTTGGATG CACTGCAGGCACAAAACCCAGTGTGTTAAATGTAAAAACTGTGTCATAACTTCATTTTATGTGATTCTAGCATATTATGA AGTGCATCCCAACATTCTATTTGTTTCAAAATTATGAATTGGTTCAATTGGACTATTGTGCATTTGTGCTTTTTGAGAGA AAGACCACTGTTTTGTCTGACTCGGTGGCAGAGGATGATACCAGTGTGTCCAATTGAACCCTCATAGAGTCATAGTCATA CATGAGAATGGATACATGACTTGTCTAATTAGTTTTCTTAACTTCTAATATGATAATTATTTTCAGGGTTGTGAAGTGTG CGGGGCCTAGAGGGCACATCCTTAATCTTGGGCACGGTGTTCTTGTTGGCACACCTGAAGAAGCTGTTGCACATTTCTTT GAAGTAGCAAGGAGCTTGAAATTCGACACACACTTTCAGAATACAACTGCAAATGATCCTGAACTTGTAATTTAATGACA AATGCTGCTAGTGGTGGAGTGCAAGCCCTTCTCTAGAAGAGTGCAAGCTTAGTTGTGATGATCAAAGTTATGAGGATTTG CACATTGTTGGTCCGGCGGCTAACCGATGAAACTAGACAAATATGTGATTTTCCAGTATGTATAAATTAAGTAGAGGATT CCTTCCTATTGTTTATTTTTGGATTCTTACAACTGGAAACTCATGTTGCAGTTTTCAATTAAGGTTAATAAGAAGCCATT CTAAGGACAATGACTATGCTAACATCCTATACAGTACATATCAGCCAAACTATATTGCTTACCATTAACAAGTTATATAA TATCAAAATCAAATTTCAAGATGAGACACTGTTTTTATGTTTTTGTATTGTCAAGCCAATAATTATATGCTGGCCCTGAG GCCAGTGATGGAGGTGAAACATGGATATCACGGTCACTTTACCATTAATGTGTTTTACAAAGAAGATTATGTTAATATAT AC
CDS sequence (LotjaGi2g1v0305200.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTACTTCCATTAACAGCTGTGGGTTGGGATGGAAATCTTCCACCTTGTTTGCACACTCTACTACTACTGGCTTCAA TTCAATTTCTCCTTCTTTCAAACCAAAACCCAAGCTTTCTCTCACTTGCTCCGCTGCCTCCTCTTCTTCTGATCCGCTCT TGGTTAAGGCTGCTAGGGGAGATCCTGTTAGTCGTCCTCCAGCATGGATGATGCGCCAGGCGGGAAGGTACATGGCTGTT TACAGAAAGCTTGCTGAGAAGCATCCCTCATTTCGAGAGAGATCAGAGACAACTGATCTCATTGTGGAAATTTCTTTGCA GCCTTGGAAAGCTTTCAGGCCTGATGGAGTGATTATTTTCTCTGACATCCTTACACCTCTACCTGCATTTGGAATTGAAT TTGACATAGAAGATGTAAAGGGACCTGTTATACAGTCACCTATTCGCTCTGAGGAGGGATTAAAGGCTTTGCACTCAATC GACTTGGACAGACTTAGATTTGTTGGAGATTCACTTAAGCTCCTGCGCCAGGAGGTTGGTGGTCATGCTGCCGTTTTGGG TTTTGTGGGAGCACCTTGGACATTGGCAACATATATAGTGGAAGGGGGTACAACACGCACTTACACAACCATTAAGAGCA TGTGCCATACAGCACCAGACATATTGAGGACTCTGCTTTCTCATTTGTCACAGGCGATAGCAGATTACATTGTTTTCCAA GTTGAATCTGGGGCTCACTGCATACAAATATTTGATTCTTGGGGTGGACAATTACCACCTAGTATGTGGGAAAGCTGGTC AAAGCCTTATATCACCGAGATTGTAAAAGTGGTCAAGAAAAAATGCCCCGAGACACCAATCGTTCTTTATATAAATGGAA ATGGCGGCCTTCTCGAGCGTATGGTAGACACTGGAGTTGATGTTATTGGACTAGACTGGACAGTGGATATGGCAGATGGA AGAAGAAGATTGGGTAGTGGGATAGGTGTGCAGGGAAATGTGGACCCTGCCTCCCTATTCTCCCCTCTTTCTTCCCTTAC TGAAGAAATTCAGAGGGTTGTGAAGTGTGCGGGGCCTAGAGGGCACATCCTTAATCTTGGGCACGGTGTTCTTGTTGGCA CACCTGAAGAAGCTGTTGCACATTTCTTTGAAGTAGCAAGGAGCTTGAAATTCGACACACACTTTCAGAATACAACTGCA AATGATCCTGAACTTGTAATTTAA
Protein sequence (LotjaGi2g1v0305200.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MATSINSCGLGWKSSTLFAHSTTTGFNSISPSFKPKPKLSLTCSAASSSSDPLLVKAARGDPVSRPPAWMMRQAGRYMAV YRKLAEKHPSFRERSETTDLIVEISLQPWKAFRPDGVIIFSDILTPLPAFGIEFDIEDVKGPVIQSPIRSEEGLKALHSI DLDRLRFVGDSLKLLRQEVGGHAAVLGFVGAPWTLATYIVEGGTTRTYTTIKSMCHTAPDILRTLLSHLSQAIADYIVFQ VESGAHCIQIFDSWGGQLPPSMWESWSKPYITEIVKVVKKKCPETPIVLYINGNGGLLERMVDTGVDVIGLDWTVDMADG RRRLGSGIGVQGNVDPASLFSPLSSLTEEIQRVVKCAGPRGHILNLGHGVLVGTPEEAVAHFFEVARSLKFDTHFQNTTA NDPELVI
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| PANTHER | 31 | 402 | 372 | 4.3E-231 | – | |
| PANTHER | 31 | 402 | 372 | 4.3E-231 | – | |
| Gene3D | 42 | 391 | 350 | 1.9E-130 | ||
| Hamap | 50 | 390 | 341 | 40.654 | ||
| Pfam | 52 | 388 | 337 | 5.6E-111 | ||
| SUPERFAMILY | 53 | 390 | 338 | 1.57E-100 | ||
| TIGRFAM | 54 | 387 | 334 | 6.1E-122 | ||
| CDD | 56 | 388 | 333 | 5.48242E-172 | ||
| ProSitePatterns | 67 | 76 | 10 | - | ||
| ProSitePatterns | 186 | 202 | 17 | - |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Uroporphyrinogen decarboxylase activity | Catalysis of the reaction: uroporphyrinogen-III = coproporphyrinogen + 4 CO2. | ||
| Biological process | Porphyrin-containing compound biosynthetic process | The chemical reactions and pathways resulting in the formation of any member of a large group of derivatives or analogs of porphyrin. Porphyrin consists of a ring of four pyrrole nuclei linked each to the next at their alpha positions through a methine group. |
Expression pattern of LotjaGi2g1v0305200.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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