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| Field | Value |
|---|---|
| Gene ID | LotjaGi4g1v0087400 |
| Transcript ID | LotjaGi4g1v0087400.1 |
| Related isoforms 1 | |
| Lotus japonicus genome version | Gifu v1.2 |
| Description | RNA binding protein, putative; TAIR: AT3G25150.2 Nuclear transport factor 2 (NTF2) family protein with RNA binding (RRM-RBD-RNP motifs) domain-containing protein; Swiss-Prot: sp|O94260|G3BP_SCHPO Putative G3BP-like protein; TrEMBL-Plants: tr|A0A0S3R2J6|A0A0S3R2J6_PHAAN Uncharacterized protein; Found in the gene: LotjaGi4g1v0087400 |
| Working Lj name | n.a. |
Genomic sequence (LjG1.1_chr4:11621194..11626717) extracted from Lotus japonicus Gifu genome v1.2.
CTTAAATTAAAAAAACTCGTGCGACCTGATTTGATTAACAAAGATTTCTTCAAGCTGGTCCCACTCCCACCTGTTGTCAA AACAAGACACAGATAAAGAACACAAAGTAAGCCGATTGAGATCTGCAAGCAAACTCGAAAACGCTGGGCCTGGTCTCAAC TCAACCTAAAAAACCAAACCAAACCGAAAAACCCTTTTTCCCACAACCAAATATAAATATTGAAATCTTTTCATTTTCTC AGGTCTCTCTCTCAAGTGTACTCAACCGCCTCACTCTTCTCTCTCTCAGCCTCAGCCACCGCCACCTCCTTCCTCTTCCT CTTCCTCTTCCTCTTCGACTTTGATCACTCCACCGGAGGTGAGGTACCACCATTTCTCTCTCGTGATTTCGATTTTCATT TGATCCGTGTTTTCTCTCTCGCCGATTCATCATTTTTGTTCTCTGTCTTATTATAATTATTATTAAACTGTTTTTCTGCA TGTCATGGTTGATTAGGGTTTGCTTGTTAGGATTTAGGGTTTTGAAATGATTTTTTTTTAGCTTTGTCTAGTTTTAGGTT TATTCTAATTATTATTCTGGTTTCATATTTGAATCGTTTTGCAATGCATGGCAGGGTTATGTATAATGTTTATACGTTAT TTGTTTAAATTAAAGGAAATTATTTTGTTAGTTGATTGAATTTATGTTGTGAATTTATTGTGTTTGATTTGCGTTTTTTG TGAATTAATTATTTGATTTTTTGTGGTGCCACAGAGATGGCTGCGACTGATGGAGCTCCCACCCCTCAGATGGTTGGCAA TGCTTTTGTGGAGCAGTACTACTCAATTCTCCATCATGATCCGGAGCAGGTTCACAGGTTTTACCATGAGACGAGTATCC TCAGTCGACCTGAAGAAGATGGTACTATGACCACGGTCACTACTACTGTCGTAAGTACCCGCCATACACTTAAATGAATT ATCCTATATATATACCGAGCTGTATAATTGCAGGTGTTGCTCATGTTAAACTGTATTTATCCTATGATTTTTCATGTCTT GATCTGTTATTGCAAAACTTCCAAATTGATGTTTTTTAATATTAAAAAATATTAGTTATTTAACGGACTCGAATTAAATT TTACCGGGAGCACCTAAGTGTGGTTTATGTGCTTTACTTGAGTGGGGGAGGGGACAGGGTTTTTGACCAATAAAGAATAA AAAACTATTTATCAGAATAATATTTTTTTTTACTAATGTAGGCAATTTATGCCACGTGGGTAGTTGATGTTGAAAGCCGA AAGTGGCGGACTGGCGGTTAGAAAACGCCAACTTGTTCAGCAGTTTTGGCGATCCCTGCGCCTCAACTAAAAGCTGGCAG ACAAATACATTCTGGAGCTAAATTTATCACTCTACCCTATATTGATCATTTTGAACAAAAAGAATCAAGCCTACCTCTTC TCTCCCTATATAGATCTTTCAGGCGATTGCGCCTGCGACAACAATTTACCTTGTTGCGGCAATAGGGAAAATACAGCAAT TTTTTTATCAATTAGGAACCAGCCTCACATGATTGTCACATGTGCTTTTGTCCCTTTAAAACTGCCTCCATAAAAAATCG GGGAGCAACCGATACAGTACGTAATTACGTTGAAACCCTGTAAACACATAATCTCTCTTCTTCCTCCATTGACCTCGATT CCTTTTTTCTCTATCATCTCTTGCGACTTAGAGTAGGTTTTTGGCGAGCTTCCTGGGCCACCAACAATAGTTACATCATG CTCTGTTTTTTTAATAAATTCTTCCTTTACCTTCTGTTTTTTGCTATTTTGTTTTCCATCTTTCATTGTTATTTGTTTTC TTGCTCTTTTAATAACTTGTTTTTTTTATCTTGTGACAAGCTTAAATGAATTTCTTACTTATTTCAACCTCTATGTGACT TCCTCTTTTTGCCCGTGATGCTATCCGCTATATGACAAGCAGATTTTCCTTGTTCTACGATTAACAAACTGGTCTGGAGA GGATGACCTTCATTTAAACCTTCCCTCTTTTAATTGTTGTATATTTGGCCTTTTTGCACACCTTGTCCCACATCATTAAG AAATCACTTTCATCATGCTTTGAATATTTTTAGTAGATGTCTTTATATTAATTGTGTGTGCATCTTTTGTTTTTATCAAC ATTTTTTGTACTCCTTACTTAAAGTATTAGAGATAATCTTGTTTGCCCTGTACAGATTTCATGATAAATGTAGTACTAGC AATCCCCCTTTTACTGCTCCAGCTCATGTGTAACTCAGTTCATTTGAACTCTCATCTAAGTATTGTGTTTTTCATAATTT GAGTTTGATATGGTGTATTGCAATAAATGATTTTACATCTGCTGACTTCAATGATTTTTGTTTTGGTACAGGAAATAAAT AAAAAGATACTCTCTCAGGATTACAAGAGCTTTAGGGTGGAGATTCTGAGTGCTGATTCTCAGCCTTCATATAAGGAAGG TGTAATAGTTGCAGTGACTGGCTGCTTAACTGGAACTGACAATATGAAGCGGAAGTTTGCTCAGTCATTTTTCCTAGCTC CACAGGACAAGGGCTACTTTGTTTTGAATGATGTTTTTAGATATGTTGATGAGTACAAGTCTGTTGATATTGAGTCTGTG CCATCACGTGATGCTGATGAAATTACTCTATCTGATGCTTTTGCCCCCGAGCCTGGTAAATATTCTATGTAGTTAGTAGC TTGAGAGGGGTTTACATTTTTTGAAAAGAAATTTTCTGAACTGTTCGATTTAATGGATACAGATATACAATTATATTTAC TGGATAATTGATAAGGATGCTAGAATATATATATATATATATATATATATATATATATATACACATACATACATACACAC ATGAATCTATCGACAAATGAATTTGAAACTAACTTCTGATGCTATTTCGTTCAAAATATATGGTCTGTCATCCTGTGCCT CCCAACATTTTATATAATTGTTAAATGTTTTGGTTTTTATGATTTTGTTTATGGTTGTGAATATAGAGCCCAATCATGTT CCTGAAGACATTCCTCCTAGTCAAACTGCTATTGCTGAAACTGATGCTAGCATCAGGAAAGAAGTGTCTCAACCACTGGA GAATGGAAAATTATCAGTTACTGAAAAGGTGATTCCTGTTAATCATGTTGAAGAGCCAAATCATCAGGAACATCACTCAA GCTCTGAGAAAGCTGATTCTAATACACAGGAGGATGCTCCTAAGAAGTCTTTTGCATCCATTGTAAGTTTTATTTTTTTG TTTATTATTTCTTCATTTTGTTTTGTAGTGTCTGACAATAACTTTTCTGTAATGATTTCTTCCAGGTCAATGCATTGAAT GAAAATGCTGCTCCCTTCCATGTGAGGACTTCCCCTATGAAACCTGTAGAACAGCCTCGTGTCTCTAGCAAGCCTGCATC TGAAGCTCAAGCTCCTATCGCTGATGTCCTACTGGAAAAGAATAATGAGAATGCAGGTTAATTTACCATTTTAGTGACTA GTATGGTCAATTTTATACAATTCAGTTAAAAGTTGCCTCATTTGTTCAGGATGTTATCTCATAACTAATAACCTTCACAG GTAAGGCTCATGCCATATTTGTTGCGAATTTACCTATGAATGCTACCGTAGAGCAACTGGAACGGGCTTTTGTGGAATTT GGGCCCATTAAAACCAATGGTATTCAAGTTAGAAGTAATAAGGTTAGTCTGTCATAATCATTTCTACTATCAAGTTTAGT AAATGCAGTTTAAAGTTAAACAACTACAGGATATAATTTTTTCTTTTTTCTTTTTCAGCAACAAGGATCTTGTTTTGGTT TTGTGGAATTTGAATCTGCTGCGTCAATGCAAAGTGCACTTGAGGTAGAGTTTGGAATTTTTATTGGTAGTTAAAAATCT ATTGTCAAGGTCCTTTGTTGAATGTTGATTGGGTTTCAGAAATCTTTATCGTTGAATGTTTTATTGTCAATGCAAATTGC AGGATATTTTTTTATCTATCGTGAGGAGTGATGTTTCCCTTTCTTTTGAATTTTCAATGCATAATAACTATATTTTCCAA TCAGCGCTGCTATATGTTCTGAAAAGCAGGCTCTTTGAAACCCATGATCAGAATTTTGTTCACTGCGTACAGCACACACT TTTTGAAACAAAACTAAACTAGTTGCCTGTTTTTACAGATCTGAAAACCAATCAAATTAAATTTTTCCTACTCGTACCAT TTAGTATTTCACTTTTCCAATGCATTAGAAGCGCATGGTTCCAATTGCAAGCTATTCCATATGACAAGCATGTGTACTTT TTCAGGCCGCTGTTATATTGGACAACCGCAGACTATCCATTGAAGAAAGGCGAGGCAAGTGTGACATTATTTTTGTTAAA TTTGAACATCCTCATTTTTCAGTTTTCATGTTTTGTTTATTATTTCCCATGAGTTCTGTCTTCGACTAATGTTTGCTCTA AAAAGTGGTGTATAATCGTGATTTGCTTCCTTTCTAGATTCTCTAAAACCAATGCAAATATTAATTTAAGTTAAAACTGC GAGGGTATAGATTCATGTACCTGGTGACATTGGGAACATTTAGAACATTGTCGCTAAATATTTTGTATTATTTGTTGCAG CTAATAATGACAGGGCCAGATATCCATCAGGACGCGGTGGATACCGAAATGACAGAAATGATAGCTTCAGGGGCCGTGGC AACTTCGGTGGTGGCAACTTTGGTGGTGGCCGTGGTGGTGGCTACAACGGCAGGAATGATTTTGAGAGGCGAAATGAGTT CTCTGGCCGACCACGAGGTGGCAATAATATGGGACGTAACAATGGAGAAACTGCGCCAAGGAGTTATCAGAATGGTCAGA CTGGTCAGAATGGAGGAAGAGTCGCTCGCCAACCGGTGAAAGCTCAGTAAAGCGCTTTTAGTTGGTAATTTAGTTACAAC GGAATTTTCTTATAGATAGCGGCATCTAAGGGATTTTGGTTTTCATTTGGATTAGAGTCTTTTTCTTTTAATAGCTGTCA TGATTCTTTCGGGCAGTTGTTTTTGGTTAAATTAAGTGATTCCATATTTAGTTCTCTCCCGATTTTTGTTACATTTTGTA TCTAAGTTTTGGTATGATTGTTTTGTGGAATTGGCTACATTTATATACCATTTTTTAAGAAACAAAATCAATGTTTCGTG CTAACATTTGTTTTATTGGTTGAAGTTCATGCTGATCCTATCAAATAGGTGGGAATTCATATATTGAAATCCATGTGGAT TTTAATTATTAGGAGGATTTCAATTAATAGGAGTGCGTTATATAGAGTTAACAGTTGTTATTTGCACCGGTGTTGGTTGT TGTGGTTAAAAGAGTTTGCATGCATCCAATGGTTTCAAAGAAACTAGTTTTCATTATATCCGGATTGAATAAGATTGCCT TAATAGAAGATACTTGTGTTTGAATTTTTGTGAGGAAAATACAAGTCTTCTTATATTTGTAAGGTTAAAAGAATAGGATT CATT
CDS sequence (LotjaGi4g1v0087400.1) extracted from Lotus japonicus Gifu v1.2 CDS.
ATGGCTGCGACTGATGGAGCTCCCACCCCTCAGATGGTTGGCAATGCTTTTGTGGAGCAGTACTACTCAATTCTCCATCA TGATCCGGAGCAGGTTCACAGGTTTTACCATGAGACGAGTATCCTCAGTCGACCTGAAGAAGATGGTACTATGACCACGG TCACTACTACTGTCGAAATAAATAAAAAGATACTCTCTCAGGATTACAAGAGCTTTAGGGTGGAGATTCTGAGTGCTGAT TCTCAGCCTTCATATAAGGAAGGTGTAATAGTTGCAGTGACTGGCTGCTTAACTGGAACTGACAATATGAAGCGGAAGTT TGCTCAGTCATTTTTCCTAGCTCCACAGGACAAGGGCTACTTTGTTTTGAATGATGTTTTTAGATATGTTGATGAGTACA AGTCTGTTGATATTGAGTCTGTGCCATCACGTGATGCTGATGAAATTACTCTATCTGATGCTTTTGCCCCCGAGCCTGAG CCCAATCATGTTCCTGAAGACATTCCTCCTAGTCAAACTGCTATTGCTGAAACTGATGCTAGCATCAGGAAAGAAGTGTC TCAACCACTGGAGAATGGAAAATTATCAGTTACTGAAAAGGTGATTCCTGTTAATCATGTTGAAGAGCCAAATCATCAGG AACATCACTCAAGCTCTGAGAAAGCTGATTCTAATACACAGGAGGATGCTCCTAAGAAGTCTTTTGCATCCATTGTCAAT GCATTGAATGAAAATGCTGCTCCCTTCCATGTGAGGACTTCCCCTATGAAACCTGTAGAACAGCCTCGTGTCTCTAGCAA GCCTGCATCTGAAGCTCAAGCTCCTATCGCTGATGTCCTACTGGAAAAGAATAATGAGAATGCAGGTAAGGCTCATGCCA TATTTGTTGCGAATTTACCTATGAATGCTACCGTAGAGCAACTGGAACGGGCTTTTGTGGAATTTGGGCCCATTAAAACC AATGGTATTCAAGTTAGAAGTAATAAGCAACAAGGATCTTGTTTTGGTTTTGTGGAATTTGAATCTGCTGCGTCAATGCA AAGTGCACTTGAGGCCGCTGTTATATTGGACAACCGCAGACTATCCATTGAAGAAAGGCGAGGCAAGTGTGACATTATTT TTGTTAAATTTGAACATCCTCATTTTTCAGTTTTCATGTTTTGTTTATTATTTCCCATGAGTTCTGTCTTCGACTAA
Protein sequence (LotjaGi4g1v0087400.1) extracted from Lotus japonicus Gifu v1.2 Proteins.
MAATDGAPTPQMVGNAFVEQYYSILHHDPEQVHRFYHETSILSRPEEDGTMTTVTTTVEINKKILSQDYKSFRVEILSAD SQPSYKEGVIVAVTGCLTGTDNMKRKFAQSFFLAPQDKGYFVLNDVFRYVDEYKSVDIESVPSRDADEITLSDAFAPEPE PNHVPEDIPPSQTAIAETDASIRKEVSQPLENGKLSVTEKVIPVNHVEEPNHQEHHSSSEKADSNTQEDAPKKSFASIVN ALNENAAPFHVRTSPMKPVEQPRVSSKPASEAQAPIADVLLEKNNENAGKAHAIFVANLPMNATVEQLERAFVEFGPIKT NGIQVRSNKQQGSCFGFVEFESAASMQSALEAAVILDNRRLSIEERRGKCDIIFVKFEHPHFSVFMFCLLFPMSSVFD
Data for domain prediction are obtained with InterProScan, and merged with InterPro data obtained from the EB-eye REST service.
| Prediction algorithm | Identifier | Start | End | Length | E-value | InterPro ID |
|---|---|---|---|---|---|---|
| Gene3D | 3 | 134 | 132 | 7.8E-38 | – | |
| PANTHER | 6 | 369 | 364 | 5.9E-144 | ||
| PANTHER | 6 | 369 | 364 | 5.9E-144 | – | |
| CDD | 9 | 131 | 123 | 1.30549E-43 | ||
| SUPERFAMILY | 9 | 130 | 122 | 5.07E-38 | ||
| Pfam | 13 | 129 | 117 | 4.5E-30 | ||
| ProSiteProfiles | 13 | 129 | 117 | 33.568 | ||
| MobiDBLite | 209 | 232 | 24 | - | – | |
| MobiDBLite | 209 | 228 | 20 | - | – | |
| MobiDBLite | 248 | 271 | 24 | - | – | |
| Gene3D | 280 | 371 | 92 | 7.7E-15 | ||
| SUPERFAMILY | 284 | 371 | 88 | 3.53E-14 | ||
| ProSiteProfiles | 292 | 368 | 77 | 12.901 | ||
| SMART | 293 | 364 | 72 | 1.5E-10 | ||
| Pfam | 294 | 352 | 59 | 1.8E-12 | ||
| CDD | 294 | 364 | 71 | 5.10024E-13 | – |
GO predictions are based solely on the InterPro-to-GO mappings published by EMBL-EBI, which are in turn based on the mapping of predicted domains to the InterPro dataset. The InterPro-to-GO mapping was last updated on , while the GO metadata was last updated on .
| GO term | Namespace | Name | Definition | Relationships |
|---|---|---|---|---|
| Molecular function | Nucleic acid binding | Interacting selectively and non-covalently with any nucleic acid. |
Expression pattern of LotjaGi4g1v0087400.1, powered by ExpAt. For advanced configuration, data transformation and export options, view expression data in the ExpAt application.
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